Wall clock time and date at job start Tue Mar 31 2020 15:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86795 * 119.99906 * 2 1 4 4 H 1.48498 * 109.47262 * 269.99849 * 3 2 1 5 5 H 1.48496 * 109.47176 * 30.00396 * 3 2 1 6 6 H 1.48503 * 109.46816 * 149.99875 * 3 2 1 7 7 C 1.38801 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00142 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00000 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47057 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46925 * 180.02562 * 11 10 9 13 13 O 1.45199 * 109.46985 * 179.97438 * 12 11 10 14 14 C 1.34706 * 117.00217 * 179.97438 * 13 12 11 15 15 O 1.21477 * 119.99835 * 0.02562 * 14 13 12 16 16 C 1.47742 * 120.00581 * 180.02562 * 14 13 12 17 17 C 1.39585 * 120.11682 * 0.02562 * 16 14 13 18 18 C 1.38439 * 119.78334 * 179.97438 * 17 16 14 19 19 O 1.35909 * 119.98167 * 179.97438 * 18 17 16 20 20 C 1.38862 * 120.04195 * 359.97438 * 18 17 16 21 21 C 1.38258 * 120.24449 * 0.03791 * 20 18 17 22 22 N 1.48018 * 119.89270 * 179.97438 * 21 20 18 23 23 O 1.21799 * 119.99794 * 179.97438 * 22 21 20 24 24 O 1.21797 * 119.99787 * 359.97438 * 22 21 20 25 25 C 1.37995 * 120.21432 * 359.96496 * 21 20 18 26 26 H 0.96991 * 119.99991 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.46741 * 59.99639 * 10 9 7 28 28 H 1.09000 * 109.46908 * 300.00094 * 10 9 7 29 29 H 1.08993 * 109.47153 * 60.00033 * 11 10 9 30 30 H 1.09000 * 109.47318 * 299.99818 * 11 10 9 31 31 H 1.09001 * 109.47112 * 60.00279 * 12 11 10 32 32 H 1.09000 * 109.47342 * 299.99688 * 12 11 10 33 33 H 1.07991 * 120.10681 * 359.70001 * 17 16 14 34 34 H 0.96696 * 114.00594 * 90.00165 * 19 18 17 35 35 H 1.07993 * 119.87993 * 180.02562 * 20 18 17 36 36 H 1.07999 * 120.01905 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9793 -5.3243 -0.0001 12 6 3.1514 -6.3077 0.0005 13 8 2.6422 -7.6675 0.0005 14 6 3.5517 -8.6612 0.0005 15 8 4.7378 -8.3989 0.0010 16 6 3.1068 -10.0700 0.0000 17 6 1.7445 -10.3743 -0.0011 18 6 1.3353 -11.6968 -0.0022 19 8 0.0100 -11.9977 -0.0027 20 6 2.2782 -12.7163 -0.0027 21 6 3.6279 -12.4165 -0.0014 22 7 4.6263 -13.5093 -0.0014 23 8 5.8158 -13.2474 -0.0007 24 8 4.2583 -14.6704 -0.0021 25 6 4.0473 -11.1018 -0.0003 26 1 -0.4850 0.8400 0.0004 27 1 3.1245 -3.7313 0.8906 28 1 3.1244 -3.7314 -0.8894 29 1 1.3710 -5.4840 -0.8903 30 1 1.3704 -5.4847 0.8897 31 1 3.7593 -6.1479 0.8910 32 1 3.7606 -6.1476 -0.8890 33 1 1.0122 -9.5807 0.0034 34 1 -0.3734 -12.0842 -0.8862 35 1 1.9561 -13.7470 -0.0040 36 1 5.1024 -10.8713 0.0004 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805503263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:32 Heat of formation + Delta-G solvation = -133.827530 kcal Electronic energy + Delta-G solvation = -23362.288044 eV Core-core repulsion = 19326.595133 eV Total energy + Delta-G solvation = -4035.692912 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.43809 -41.98173 -40.76590 -38.33871 -37.80924 -37.68466 -35.00425 -34.59499 -33.51740 -31.62407 -28.45154 -27.88780 -27.56049 -25.71886 -23.75322 -22.83422 -22.48811 -20.85039 -19.91861 -19.56643 -18.87760 -18.75411 -18.56111 -18.01186 -17.88334 -17.48758 -16.93015 -16.90204 -16.25266 -16.12267 -15.91814 -15.07760 -14.41844 -14.39618 -13.99244 -13.87486 -13.82692 -13.54790 -13.15871 -12.96169 -12.86615 -12.66523 -12.64615 -12.45930 -12.45040 -12.40850 -12.32885 -11.84561 -11.58434 -11.49940 -11.15508 -11.00291 -10.40911 -10.36499 -8.67919 -8.38996 -6.14888 -1.49352 -0.90051 -0.02244 0.07122 1.02573 1.13816 1.34629 1.39056 1.49108 1.76389 1.99264 2.26251 2.62545 2.95815 3.04730 3.24938 3.29959 3.42422 3.49302 3.79936 3.84064 3.86866 3.93386 4.13265 4.30876 4.31763 4.46352 4.54625 4.67521 4.68718 4.79732 5.01377 5.02560 5.11578 5.27237 5.39680 6.17090 6.30723 6.36423 6.60299 7.04055 8.70117 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.029520 B = 0.001821 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.293891 B =15371.813775 C =16291.823068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.016 3.984 3 Si 0.992 3.008 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.541 4.541 8 H 0.074 0.926 9 S -0.182 6.182 10 C -0.094 4.094 11 C -0.086 4.086 12 C 0.081 3.919 13 O -0.342 6.342 14 C 0.514 3.486 15 O -0.522 6.522 16 C -0.105 4.105 17 C -0.025 4.025 18 C 0.126 3.874 19 O -0.483 6.483 20 C -0.043 4.043 21 C -0.045 4.045 22 N 0.030 4.970 23 O -0.187 6.187 24 O -0.145 6.145 25 C -0.007 4.007 26 H 0.272 0.728 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.183 0.817 34 H 0.427 0.573 35 H 0.185 0.815 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 -26.740 -1.856 26.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.814 3.186 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.689 4.689 8 H 0.092 0.908 9 S 0.046 5.954 10 C -0.243 4.243 11 C -0.124 4.124 12 C 0.006 3.994 13 O -0.258 6.258 14 C 0.359 3.641 15 O -0.412 6.412 16 C -0.108 4.108 17 C -0.043 4.043 18 C 0.080 3.920 19 O -0.298 6.298 20 C -0.062 4.062 21 C -0.128 4.128 22 N 0.548 4.452 23 O -0.397 6.397 24 O -0.366 6.366 25 C -0.027 4.027 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.201 0.799 34 H 0.289 0.711 35 H 0.202 0.798 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.212 -26.116 -1.268 26.147 hybrid contribution 2.180 1.148 -0.448 2.504 sum 2.392 -24.968 -1.717 25.141 Atomic orbital electron populations 1.70133 1.07575 1.28597 1.47878 1.26033 0.96035 1.03032 0.93785 0.85037 0.78185 0.76538 0.78801 1.19334 1.19980 1.18834 1.23059 0.94845 0.92027 1.58925 0.90807 1.84590 1.13006 1.00730 1.97061 1.23081 1.00841 0.96632 1.03727 1.21115 0.96941 0.89527 1.04849 1.23174 0.96906 0.75789 1.03561 1.86460 1.39212 1.16739 1.83367 1.20949 0.83943 0.86591 0.72665 1.90901 1.18887 1.85125 1.46255 1.18565 0.93909 0.88877 1.09412 1.22502 0.94916 0.98505 0.88406 1.17753 0.85025 0.89421 0.99829 1.84892 1.16513 1.91747 1.36686 1.21788 0.88711 1.04156 0.91562 1.20593 0.89010 0.86396 1.16817 1.43708 1.01994 1.02277 0.97258 1.94609 1.00153 1.89987 1.54913 1.94531 1.85410 1.04416 1.52271 1.20982 1.02692 0.88866 0.90128 0.91917 0.91378 0.91271 0.89766 0.89937 0.90403 0.90225 0.79945 0.71052 0.79751 0.82106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.16 13.22 21.65 0.29 -52.87 16 2 C 0.02 0.91 5.49 84.86 0.47 1.37 16 3 Si 0.99 42.89 29.55 68.60 2.03 44.91 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.54 -30.20 9.50 67.95 0.65 -29.55 16 8 H 0.07 3.97 7.80 -2.91 -0.02 3.95 16 9 S -0.18 -9.17 21.44 -56.49 -1.21 -10.39 16 10 C -0.09 -3.42 5.67 71.98 0.41 -3.01 16 11 C -0.09 -2.36 5.60 30.59 0.17 -2.19 16 12 C 0.08 1.87 5.48 71.98 0.39 2.27 16 13 O -0.34 -7.04 9.47 -56.16 -0.53 -7.57 16 14 C 0.51 10.62 7.90 70.33 0.56 11.18 16 15 O -0.52 -13.96 16.13 19.91 0.32 -13.64 16 16 C -0.11 -1.55 5.87 -20.11 -0.12 -1.67 16 17 C -0.02 -0.23 9.56 22.64 0.22 -0.01 16 18 C 0.13 0.88 6.70 22.47 0.15 1.03 16 19 O -0.48 -1.91 13.50 -92.52 -1.25 -3.16 16 20 C -0.04 -0.38 9.49 22.42 0.21 -0.16 16 21 C -0.05 -0.65 6.84 36.32 0.25 -0.41 16 22 N 0.03 0.59 4.45 -46.59 -0.21 0.38 16 23 O -0.19 -4.38 18.44 18.89 0.35 -4.03 16 24 O -0.15 -2.86 18.43 18.89 0.35 -2.51 16 25 C -0.01 -0.12 9.10 22.54 0.21 0.09 16 26 H 0.27 14.82 8.31 -92.72 -0.77 14.05 16 27 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.07 2.47 8.14 -2.40 -0.02 2.45 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 33 H 0.18 1.24 7.61 -2.92 -0.02 1.22 16 34 H 0.43 -2.60 9.06 -74.06 -0.67 -3.27 16 35 H 0.19 0.98 7.59 -2.91 -0.02 0.96 16 36 H 0.16 2.85 7.19 -2.91 -0.02 2.83 16 Total: -1.00 -72.93 349.56 4.16 -68.77 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: 0.47 Total: 1.18 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 3.56 Total: -21.07 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.08 Total: -52.50 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.76 Total: -30.91 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.21 Total: -10.39 kcal Total: -72.93 4.16 -68.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805503263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.060 kcal (2) G-P(sol) polarization free energy of solvation -72.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds