Wall clock time and date at job start Tue Mar 31 2020 14:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86803 * 119.99959 * 2 1 4 4 H 1.48496 * 109.46943 * 269.99756 * 3 2 1 5 5 H 1.48500 * 109.47157 * 29.99585 * 3 2 1 6 6 H 1.48499 * 109.46767 * 150.00142 * 3 2 1 7 7 C 1.38797 * 119.99583 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00582 * 0.02562 * 7 2 1 9 9 S 1.76200 * 119.99603 * 179.97438 * 7 2 1 10 10 C 1.80995 * 100.00044 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47338 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47474 * 179.97438 * 11 10 9 13 13 O 1.42893 * 109.47197 * 180.02562 * 12 11 10 14 14 C 1.34911 * 116.99823 * 180.02562 * 13 12 11 15 15 O 1.21619 * 120.00212 * 359.97438 * 14 13 12 16 16 C 1.46189 * 119.99803 * 180.02562 * 14 13 12 17 17 C 1.34961 * 120.00174 * 179.97438 * 16 14 13 18 18 C 1.47120 * 120.00105 * 179.97438 * 17 16 14 19 19 C 1.40345 * 120.57022 * 180.02562 * 18 17 16 20 20 C 1.38189 * 118.28212 * 179.97438 * 19 18 17 21 21 C 1.38595 * 119.32776 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 119.44442 * 179.97438 * 21 20 19 23 23 N 1.32051 * 121.10583 * 0.27627 * 21 20 19 24 24 C 1.31654 * 121.88895 * 359.43021 * 23 21 20 25 25 H 0.97002 * 119.99581 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47119 * 60.00378 * 10 9 7 27 27 H 1.08993 * 109.47671 * 300.00020 * 10 9 7 28 28 H 1.09011 * 109.46925 * 60.00486 * 11 10 9 29 29 H 1.08997 * 109.47381 * 300.00661 * 11 10 9 30 30 H 1.08998 * 109.46318 * 60.00226 * 12 11 10 31 31 H 1.08992 * 109.46967 * 300.00544 * 12 11 10 32 32 H 1.08000 * 120.00265 * 359.97438 * 16 14 13 33 33 H 1.08000 * 119.99560 * 0.02562 * 17 16 14 34 34 H 1.07999 * 120.86003 * 0.02562 * 19 18 17 35 35 H 1.08002 * 120.33665 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.73434 * 180.26586 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9845 0.0017 11 6 5.5957 -3.2363 0.0008 12 6 5.8615 -4.7431 0.0030 13 8 7.2709 -4.9782 0.0027 14 6 7.6772 -6.2647 0.0040 15 8 6.8561 -7.1618 0.0058 16 6 9.1046 -6.5804 0.0044 17 6 9.5112 -7.8673 0.0062 18 6 10.9477 -8.1850 0.0060 19 6 11.3837 -9.5190 0.0073 20 6 12.7438 -9.7632 0.0065 21 6 13.6256 -8.6939 0.0050 22 17 15.3348 -8.9973 0.0046 23 7 13.1873 -7.4483 0.0097 24 6 11.9020 -7.1632 0.0050 25 1 -0.4849 0.8401 -0.0004 26 1 3.6433 -3.4325 -0.8876 27 1 3.6440 -3.4306 0.8923 28 1 6.0394 -2.7883 0.8900 29 1 6.0380 -2.7903 -0.8900 30 1 5.4177 -5.1915 -0.8859 31 1 5.4193 -5.1887 0.8940 32 1 9.8339 -5.7838 0.0032 33 1 8.7819 -8.6639 0.0069 34 1 10.6746 -10.3336 0.0081 35 1 13.1160 -10.7771 0.0079 36 1 11.5821 -6.1316 0.0048 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805519249.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:37 Heat of formation + Delta-G solvation = -75.134984 kcal Electronic energy + Delta-G solvation = -20321.962048 eV Core-core repulsion = 16729.523401 eV Total energy + Delta-G solvation = -3592.438647 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63902 -41.23945 -38.14943 -37.74837 -35.63965 -34.89305 -34.68002 -33.58330 -31.10003 -28.34946 -27.77894 -25.96442 -24.91668 -23.33808 -22.68705 -20.80763 -19.65271 -19.16668 -18.47589 -18.08864 -17.80073 -17.11232 -17.00212 -16.36685 -16.05635 -15.98319 -15.62654 -15.35953 -14.96167 -14.62138 -14.37576 -14.21353 -14.01389 -13.42909 -13.22276 -13.15447 -13.07901 -13.03947 -12.60569 -12.40317 -12.38849 -12.25558 -11.84533 -11.76633 -11.61706 -11.47231 -11.16413 -10.84693 -10.73514 -10.60186 -9.57415 -9.00452 -8.52007 -6.24210 -0.95288 0.06486 0.51656 0.71859 1.07330 1.33333 1.46145 1.54070 1.85860 1.88157 2.25029 2.60188 2.66279 2.86222 3.28722 3.40097 3.63221 3.76104 3.84318 3.85546 3.96404 3.98592 4.11685 4.13403 4.29750 4.49670 4.58714 4.65871 4.72606 4.76301 4.99937 5.04688 5.15685 5.16910 5.36909 5.42788 5.69331 6.10170 6.54732 6.66128 6.91690 8.61015 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.037388 B = 0.001465 C = 0.001412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.728695 B =19108.216705 C =19831.196813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.039 3.961 3 Si 0.926 3.074 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.227 1.227 7 C -0.527 4.527 8 H 0.051 0.949 9 S -0.207 6.207 10 C -0.074 4.074 11 C -0.088 4.088 12 C 0.077 3.923 13 O -0.347 6.347 14 C 0.493 3.507 15 O -0.542 6.542 16 C -0.188 4.188 17 C 0.012 3.988 18 C -0.129 4.129 19 C -0.028 4.028 20 C -0.152 4.152 21 C 0.165 3.835 22 Cl -0.032 7.032 23 N -0.509 5.509 24 C 0.135 3.865 25 H 0.277 0.723 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.167 0.833 33 H 0.150 0.850 34 H 0.185 0.815 35 H 0.176 0.824 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.567 -21.793 0.111 37.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.166 4.166 3 Si 0.747 3.253 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.150 1.150 7 C -0.674 4.674 8 H 0.069 0.931 9 S 0.021 5.979 10 C -0.223 4.223 11 C -0.126 4.126 12 C 0.001 3.999 13 O -0.263 6.263 14 C 0.342 3.658 15 O -0.434 6.434 16 C -0.206 4.206 17 C -0.007 4.007 18 C -0.131 4.131 19 C -0.053 4.053 20 C -0.172 4.172 21 C 0.002 3.998 22 Cl -0.003 7.003 23 N -0.220 5.220 24 C -0.023 4.023 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.184 0.816 33 H 0.167 0.833 34 H 0.202 0.798 35 H 0.194 0.806 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 31.620 -20.397 0.122 37.628 hybrid contribution -1.990 -0.944 -0.048 2.202 sum 29.630 -21.341 0.074 36.516 Atomic orbital electron populations 1.70045 1.07713 1.29150 1.49070 1.25785 0.95406 1.02805 0.92627 0.85710 0.80816 0.78528 0.80279 1.18547 1.18782 1.15006 1.22361 0.90150 0.96337 1.58593 0.93097 1.83808 1.07431 1.09037 1.97595 1.22982 0.99023 0.96067 1.04224 1.21161 0.92796 0.93575 1.05091 1.22618 0.77660 0.96722 1.02882 1.86140 1.27714 1.28746 1.83685 1.21746 0.91477 0.80312 0.72306 1.90884 1.56776 1.48177 1.47562 1.22289 0.90647 0.99167 1.08538 1.22306 0.93273 0.96730 0.88408 1.20027 0.93475 0.95127 1.04492 1.22268 0.95675 0.96586 0.90737 1.22125 0.92798 1.00689 1.01616 1.22204 0.87965 0.90827 0.98799 1.98426 1.10944 1.94747 1.96225 1.66986 1.18760 1.21885 1.14320 1.23456 0.85629 1.01230 0.91986 0.91382 0.91088 0.91044 0.89575 0.89553 0.91122 0.91126 0.81572 0.83265 0.79787 0.80625 0.79497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.56 13.97 21.65 0.30 -56.25 16 2 C 0.04 2.25 5.50 84.86 0.47 2.72 16 3 Si 0.93 43.54 27.74 68.60 1.90 45.44 16 4 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.23 -10.19 6.74 99.48 0.67 -9.52 16 7 C -0.53 -30.85 10.04 67.95 0.68 -30.17 16 8 H 0.05 3.25 8.03 -2.91 -0.02 3.23 16 9 S -0.21 -9.72 19.41 -56.49 -1.10 -10.82 16 10 C -0.07 -2.74 5.67 71.98 0.41 -2.33 16 11 C -0.09 -2.46 5.59 30.60 0.17 -2.29 16 12 C 0.08 1.95 5.38 71.98 0.39 2.34 16 13 O -0.35 -8.05 10.12 -58.26 -0.59 -8.64 16 14 C 0.49 10.49 7.87 69.89 0.55 11.04 16 15 O -0.54 -14.54 16.00 19.45 0.31 -14.23 16 16 C -0.19 -2.37 9.54 23.58 0.23 -2.14 16 17 C 0.01 0.11 9.48 23.85 0.23 0.34 16 18 C -0.13 -1.09 5.88 -20.05 -0.12 -1.20 16 19 C -0.03 -0.14 9.94 22.77 0.23 0.08 16 20 C -0.15 -1.03 9.86 22.34 0.22 -0.81 16 21 C 0.16 2.09 7.27 84.75 0.62 2.71 16 22 Cl -0.03 -0.40 29.10 -2.72 -0.08 -0.48 16 23 N -0.51 -7.80 10.32 -185.32 -1.91 -9.71 16 24 C 0.13 1.47 10.59 85.10 0.90 2.37 16 25 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 26 H 0.07 2.63 8.14 -2.40 -0.02 2.61 16 27 H 0.07 2.65 8.14 -2.40 -0.02 2.63 16 28 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.07 1.79 8.13 -2.39 -0.02 1.77 16 31 H 0.07 1.79 8.13 -2.39 -0.02 1.77 16 32 H 0.17 1.27 6.10 -2.91 -0.02 1.25 16 33 H 0.15 1.34 7.52 -2.91 -0.02 1.32 16 34 H 0.18 -0.23 8.06 -2.91 -0.02 -0.25 16 35 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 36 H 0.19 1.25 6.19 -2.91 -0.02 1.23 16 Total: -1.00 -73.40 351.31 4.87 -68.53 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 1.07 Total: 3.52 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 4.96 Total: -17.36 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -1.61 Total: -65.96 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.28 Total: -22.87 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.90 Total: 45.44 kcal Atomic # 16 Polarization: -9.72 SS G_CDS: -1.10 Total: -10.82 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -73.40 4.87 -68.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805519249.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.610 kcal (2) G-P(sol) polarization free energy of solvation -73.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds