Wall clock time and date at job start Tue Mar 31 2020 15:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99856 * 2 1 4 4 H 1.48494 * 109.47358 * 239.99584 * 3 2 1 5 5 H 1.48504 * 109.46916 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47209 * 119.99484 * 3 2 1 7 7 C 1.37874 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00286 * 171.98772 * 7 2 1 9 9 C 1.50697 * 119.99679 * 351.99440 * 7 2 1 10 10 C 1.53000 * 115.55251 * 84.76178 * 9 7 2 11 11 S 1.81397 * 109.47273 * 65.27707 * 10 9 7 12 12 O 1.42105 * 110.54112 * 63.02333 * 11 10 9 13 13 O 1.42098 * 110.54456 * 286.26889 * 11 10 9 14 14 O 1.52204 * 104.44828 * 174.64325 * 11 10 9 15 15 C 1.35898 * 113.99753 * 74.99897 * 14 11 10 16 16 C 1.38732 * 120.05331 * 89.99906 * 15 14 11 17 17 C 1.38149 * 119.94791 * 180.02562 * 16 15 14 18 18 C 1.38272 * 120.05035 * 0.02936 * 17 16 15 19 19 N 1.48003 * 119.94220 * 179.97438 * 18 17 16 20 20 O 1.21800 * 120.00199 * 359.97438 * 19 18 17 21 21 O 1.21804 * 119.99782 * 179.72186 * 19 18 17 22 22 C 1.38262 * 120.11407 * 0.24351 * 18 17 16 23 23 C 1.38151 * 120.05569 * 359.45681 * 22 18 17 24 24 C 1.53004 * 117.49547 * 230.42734 * 9 7 2 25 25 C 1.53000 * 117.49752 * 299.08596 * 9 7 2 26 26 H 0.96999 * 119.99915 * 5.03621 * 1 2 3 27 27 H 1.09002 * 109.47073 * 305.27565 * 10 9 7 28 28 H 1.09006 * 109.46880 * 185.28247 * 10 9 7 29 29 H 1.07996 * 120.03238 * 0.02562 * 16 15 14 30 30 H 1.07993 * 119.97946 * 179.97438 * 17 16 15 31 31 H 1.07998 * 119.97507 * 179.72817 * 22 18 17 32 32 H 1.07997 * 120.03079 * 180.24809 * 23 22 18 33 33 H 1.09008 * 117.49507 * 215.00078 * 24 9 7 34 34 H 1.08993 * 117.49843 * 0.02562 * 24 9 7 35 35 H 1.08998 * 117.50166 * 359.97438 * 25 9 7 36 36 H 1.09001 * 117.49757 * 144.97950 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0767 -1.1986 -0.1298 9 6 1.2622 -2.4926 0.1829 10 6 0.6626 -3.0944 -1.0897 11 16 1.9984 -3.5707 -2.2208 12 8 2.8073 -4.5836 -1.6385 13 8 2.5812 -2.4199 -2.8168 14 8 1.2899 -4.2714 -3.3713 15 6 0.6401 -3.4280 -4.2159 16 6 1.3006 -2.9020 -5.3167 17 6 0.6381 -2.0445 -6.1736 18 6 -0.6821 -1.7099 -5.9345 19 7 -1.3894 -0.7906 -6.8537 20 8 -0.8085 -0.3290 -7.8196 21 8 -2.5538 -0.4992 -6.6468 22 6 -1.3409 -2.2284 -4.8350 23 6 -0.6846 -3.0912 -3.9785 24 6 1.7855 -3.4625 1.2443 25 6 0.4886 -2.6868 1.4886 26 1 -0.4850 0.8368 -0.0737 27 1 0.0224 -2.3568 -1.5736 28 1 0.0730 -3.9744 -0.8326 29 1 2.3318 -3.1626 -5.5037 30 1 1.1518 -1.6344 -7.0304 31 1 -2.3707 -1.9621 -4.6479 32 1 -1.2008 -3.4991 -3.1221 33 1 1.7025 -4.5292 1.0359 34 1 2.6664 -3.1610 1.8109 35 1 0.5170 -1.8754 2.2158 36 1 -0.4477 -3.2429 1.4409 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809385037.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:36 Heat of formation + Delta-G solvation = -50.760303 kcal Electronic energy + Delta-G solvation = -26192.090304 eV Core-core repulsion = 22159.999457 eV Total energy + Delta-G solvation = -4032.090846 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.34051 -41.23467 -38.43320 -36.95733 -36.72223 -36.68082 -35.61088 -32.19501 -31.89576 -31.60368 -28.55778 -26.65053 -25.64844 -23.70242 -23.19874 -21.38034 -20.95123 -19.65104 -19.55539 -18.83803 -18.30744 -17.66131 -17.39086 -17.25250 -16.25557 -15.45229 -15.22265 -15.08750 -14.78590 -14.27071 -14.09634 -13.80121 -13.52459 -13.30994 -13.23561 -12.31937 -12.20394 -12.01175 -11.76417 -11.68759 -11.62690 -11.55697 -11.34242 -11.23760 -11.23109 -11.02387 -10.82749 -10.62369 -10.30067 -9.90758 -9.77545 -9.67584 -9.13501 -8.71248 -8.31161 -6.29039 -4.40566 -0.54792 0.51374 0.58668 1.15382 1.22651 2.36129 2.86506 3.22875 3.26364 3.31596 3.96059 4.04992 4.12478 4.19958 4.25124 4.37036 4.51713 4.80442 4.96342 4.99385 5.04066 5.29177 5.33290 5.36015 5.56161 5.61388 5.69173 6.00867 6.05375 6.17683 6.27106 6.38945 6.57220 6.80546 7.03180 7.24484 7.51529 7.65938 8.02683 8.65573 9.31947 10.78327 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.005227 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.504342 B = 5355.802289 C = 6560.540860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.084 3.916 3 Si 0.890 3.110 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.520 4.520 8 H 0.070 0.930 9 C 0.042 3.958 10 C -0.573 4.573 11 S 2.578 3.422 12 O -0.932 6.932 13 O -0.936 6.936 14 O -0.682 6.682 15 C 0.142 3.858 16 C -0.097 4.097 17 C -0.036 4.036 18 C -0.042 4.042 19 N 0.031 4.969 20 O -0.158 6.158 21 O -0.155 6.155 22 C -0.030 4.030 23 C -0.128 4.128 24 C -0.208 4.208 25 C -0.137 4.137 26 H 0.265 0.735 27 H 0.138 0.862 28 H 0.108 0.892 29 H 0.163 0.837 30 H 0.167 0.833 31 H 0.168 0.832 32 H 0.166 0.834 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 -6.761 -9.001 11.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.121 4.121 3 Si 0.717 3.283 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.557 4.557 8 H 0.088 0.912 9 C 0.040 3.960 10 C -0.705 4.705 11 S 2.679 3.321 12 O -0.930 6.930 13 O -0.935 6.935 14 O -0.639 6.639 15 C 0.099 3.901 16 C -0.117 4.117 17 C -0.055 4.055 18 C -0.126 4.126 19 N 0.551 4.449 20 O -0.374 6.374 21 O -0.372 6.372 22 C -0.050 4.050 23 C -0.148 4.148 24 C -0.245 4.245 25 C -0.176 4.176 26 H 0.075 0.925 27 H 0.157 0.843 28 H 0.126 0.874 29 H 0.181 0.819 30 H 0.184 0.816 31 H 0.186 0.814 32 H 0.184 0.816 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.308 -7.410 -8.827 11.754 hybrid contribution -0.315 1.177 0.333 1.263 sum -2.623 -6.233 -8.494 10.857 Atomic orbital electron populations 1.69941 1.06045 1.27544 1.47255 1.24945 0.94827 0.99265 0.93111 0.86659 0.79984 0.82331 0.79370 1.19469 1.21017 1.19726 1.20475 0.93779 0.88449 1.52966 0.91228 1.18237 0.99346 0.94519 0.83916 1.30265 1.16427 1.09140 1.14640 1.06043 0.77318 0.73867 0.74895 1.93567 1.64690 1.58180 1.76588 1.93613 1.75430 1.51691 1.72744 1.85851 1.73397 1.53512 1.51184 1.18338 0.91296 0.89510 0.90927 1.21325 1.01752 0.96002 0.92645 1.20916 0.90987 0.94025 0.99553 1.21229 0.94706 1.00884 0.95741 1.43498 1.00941 0.99761 1.00710 1.94542 1.68668 1.54774 1.19392 1.94554 1.00309 1.63311 1.79008 1.20879 1.01856 0.92365 0.89853 1.21439 0.92980 0.98688 1.01731 1.23246 0.98885 0.96055 1.06357 1.22572 0.92659 1.01015 1.01362 0.92500 0.84349 0.87398 0.81906 0.81593 0.81435 0.81643 0.90520 0.89247 0.89361 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.58 12.99 55.43 0.72 -21.86 16 2 C 0.08 2.17 5.38 -17.82 -0.10 2.08 16 3 Si 0.89 20.50 29.55 -169.99 -5.02 15.48 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.52 -13.32 8.15 -34.44 -0.28 -13.60 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 C 0.04 0.95 1.32 -155.66 -0.21 0.74 16 10 C -0.57 -10.86 5.15 37.16 0.19 -10.67 16 11 S 2.58 48.77 4.91 -107.50 -0.53 48.24 16 12 O -0.93 -19.60 18.09 -67.04 -1.21 -20.81 16 13 O -0.94 -19.83 15.89 -67.04 -1.07 -20.89 16 14 O -0.68 -10.48 10.05 -51.74 -0.52 -11.00 16 15 C 0.14 1.97 4.80 -39.21 -0.19 1.78 16 16 C -0.10 -1.20 9.05 -39.43 -0.36 -1.56 16 17 C -0.04 -0.41 9.55 -39.60 -0.38 -0.78 16 18 C -0.04 -0.53 6.85 -79.93 -0.55 -1.07 16 19 N 0.03 0.42 4.45 33.97 0.15 0.58 16 20 O -0.16 -2.24 18.44 -29.46 -0.54 -2.78 16 21 O -0.16 -2.23 18.44 -29.46 -0.54 -2.78 16 22 C -0.03 -0.35 9.55 -39.60 -0.38 -0.73 16 23 C -0.13 -1.52 8.54 -39.43 -0.34 -1.86 16 24 C -0.21 -4.25 9.96 -26.69 -0.27 -4.52 16 25 C -0.14 -2.89 9.50 -26.69 -0.25 -3.14 16 26 H 0.27 6.63 8.32 -40.82 -0.34 6.29 16 27 H 0.14 2.63 6.98 -51.92 -0.36 2.26 16 28 H 0.11 1.65 8.09 -51.92 -0.42 1.23 16 29 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.17 1.48 7.60 -52.49 -0.40 1.08 16 31 H 0.17 1.56 7.60 -52.49 -0.40 1.16 16 32 H 0.17 1.56 7.60 -52.49 -0.40 1.16 16 33 H 0.08 1.42 8.14 -51.92 -0.42 0.99 16 34 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 35 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 336.58 15.07 5.07 5.07 Total: -1.00 -30.89 336.58 -10.23 -41.12 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.64 Total: 2.95 kcal Atomic # 6 Polarization: -30.23 SS G_CDS: -3.10 Total: -33.33 kcal Atomic # 7 Polarization: -22.15 SS G_CDS: 0.87 Total: -21.28 kcal Atomic # 8 Polarization: -54.37 SS G_CDS: -3.88 Total: -58.26 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 48.77 SS G_CDS: -0.53 Total: 48.24 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.89 -10.23 -41.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809385037.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.642 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds