Wall clock time and date at job start Tue Mar 31 2020 15:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99856 * 2 1 4 4 H 1.48494 * 109.47358 * 239.99584 * 3 2 1 5 5 H 1.48504 * 109.46916 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47209 * 119.99484 * 3 2 1 7 7 C 1.37874 * 120.00412 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00286 * 171.98772 * 7 2 1 9 9 C 1.50697 * 119.99679 * 351.99440 * 7 2 1 10 10 C 1.53000 * 115.55251 * 84.76178 * 9 7 2 11 11 S 1.81397 * 109.47273 * 65.27707 * 10 9 7 12 12 O 1.42105 * 110.54112 * 63.02333 * 11 10 9 13 13 O 1.42098 * 110.54456 * 286.26889 * 11 10 9 14 14 O 1.52204 * 104.44828 * 174.64325 * 11 10 9 15 15 C 1.35898 * 113.99753 * 74.99897 * 14 11 10 16 16 C 1.38732 * 120.05331 * 89.99906 * 15 14 11 17 17 C 1.38149 * 119.94791 * 180.02562 * 16 15 14 18 18 C 1.38272 * 120.05035 * 0.02936 * 17 16 15 19 19 N 1.48003 * 119.94220 * 179.97438 * 18 17 16 20 20 O 1.21800 * 120.00199 * 359.97438 * 19 18 17 21 21 O 1.21804 * 119.99782 * 179.72186 * 19 18 17 22 22 C 1.38262 * 120.11407 * 0.24351 * 18 17 16 23 23 C 1.38151 * 120.05569 * 359.45681 * 22 18 17 24 24 C 1.53004 * 117.49547 * 230.42734 * 9 7 2 25 25 C 1.53000 * 117.49752 * 299.08596 * 9 7 2 26 26 H 0.96999 * 119.99915 * 5.03621 * 1 2 3 27 27 H 1.09002 * 109.47073 * 305.27565 * 10 9 7 28 28 H 1.09006 * 109.46880 * 185.28247 * 10 9 7 29 29 H 1.07996 * 120.03238 * 0.02562 * 16 15 14 30 30 H 1.07993 * 119.97946 * 179.97438 * 17 16 15 31 31 H 1.07998 * 119.97507 * 179.72817 * 22 18 17 32 32 H 1.07997 * 120.03079 * 180.24809 * 23 22 18 33 33 H 1.09008 * 117.49507 * 215.00078 * 24 9 7 34 34 H 1.08993 * 117.49843 * 0.02562 * 24 9 7 35 35 H 1.08998 * 117.50166 * 359.97438 * 25 9 7 36 36 H 1.09001 * 117.49757 * 144.97950 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0767 -1.1986 -0.1298 9 6 1.2622 -2.4926 0.1829 10 6 0.6626 -3.0944 -1.0897 11 16 1.9984 -3.5707 -2.2208 12 8 2.8073 -4.5836 -1.6385 13 8 2.5812 -2.4199 -2.8168 14 8 1.2899 -4.2714 -3.3713 15 6 0.6401 -3.4280 -4.2159 16 6 1.3006 -2.9020 -5.3167 17 6 0.6381 -2.0445 -6.1736 18 6 -0.6821 -1.7099 -5.9345 19 7 -1.3894 -0.7906 -6.8537 20 8 -0.8085 -0.3290 -7.8196 21 8 -2.5538 -0.4992 -6.6468 22 6 -1.3409 -2.2284 -4.8350 23 6 -0.6846 -3.0912 -3.9785 24 6 1.7855 -3.4625 1.2443 25 6 0.4886 -2.6868 1.4886 26 1 -0.4850 0.8368 -0.0737 27 1 0.0224 -2.3568 -1.5736 28 1 0.0730 -3.9744 -0.8326 29 1 2.3318 -3.1626 -5.5037 30 1 1.1518 -1.6344 -7.0304 31 1 -2.3707 -1.9621 -4.6479 32 1 -1.2008 -3.4991 -3.1221 33 1 1.7025 -4.5292 1.0359 34 1 2.6664 -3.1610 1.8109 35 1 0.5170 -1.8754 2.2158 36 1 -0.4477 -3.2429 1.4409 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809385037.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:35 Heat of formation + Delta-G solvation = -68.470565 kcal Electronic energy + Delta-G solvation = -26192.858278 eV Core-core repulsion = 22159.999457 eV Total energy + Delta-G solvation = -4032.858821 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.39522 -42.36711 -39.48523 -38.61158 -38.26913 -37.76417 -37.15796 -34.10477 -32.82492 -32.62160 -30.06675 -27.72604 -27.53150 -24.64612 -24.30847 -23.00555 -22.20964 -21.24609 -20.59570 -19.91973 -19.61782 -18.83814 -18.68947 -18.65319 -17.79867 -16.74823 -16.70253 -16.47493 -16.13826 -15.72637 -15.12024 -14.97452 -14.90765 -14.51926 -14.43203 -13.81696 -13.78926 -13.61248 -13.30865 -13.18875 -13.03820 -12.88171 -12.82742 -12.54860 -12.50746 -12.41814 -12.34434 -12.28911 -11.96452 -11.61279 -10.91014 -10.76811 -10.67120 -10.56617 -9.98037 -8.22357 -6.35983 -1.64213 -0.83216 -0.31930 0.07347 0.19179 1.07156 1.38088 1.40116 1.46037 1.90837 2.36942 2.57009 2.85763 3.05991 3.12970 3.22776 3.30954 3.36056 3.56833 3.70308 3.94413 4.10038 4.17643 4.42045 4.45063 4.47107 4.55878 4.61657 4.65769 4.76817 4.96495 4.98356 5.19321 5.24668 5.40418 5.59002 5.69482 6.19202 6.40973 6.69832 7.36688 8.83826 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.005227 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.504342 B = 5355.802289 C = 6560.540860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.050 3.950 3 Si 0.926 3.074 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.051 0.949 9 C 0.011 3.989 10 C -0.572 4.572 11 S 2.597 3.403 12 O -0.959 6.959 13 O -0.968 6.968 14 O -0.669 6.669 15 C 0.109 3.891 16 C -0.103 4.103 17 C -0.032 4.032 18 C -0.050 4.050 19 N 0.031 4.969 20 O -0.165 6.165 21 O -0.166 6.166 22 C -0.029 4.029 23 C -0.125 4.125 24 C -0.199 4.199 25 C -0.133 4.133 26 H 0.266 0.734 27 H 0.138 0.862 28 H 0.148 0.852 29 H 0.177 0.823 30 H 0.189 0.811 31 H 0.189 0.811 32 H 0.191 0.809 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.093 -7.452 -9.286 12.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.154 4.154 3 Si 0.752 3.248 4 H -0.203 1.203 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.069 0.931 9 C 0.009 3.991 10 C -0.703 4.703 11 S 2.698 3.302 12 O -0.958 6.958 13 O -0.966 6.966 14 O -0.627 6.627 15 C 0.067 3.933 16 C -0.124 4.124 17 C -0.050 4.050 18 C -0.134 4.134 19 N 0.549 4.451 20 O -0.381 6.381 21 O -0.381 6.381 22 C -0.048 4.048 23 C -0.145 4.145 24 C -0.237 4.237 25 C -0.173 4.173 26 H 0.075 0.925 27 H 0.157 0.843 28 H 0.166 0.834 29 H 0.194 0.806 30 H 0.206 0.794 31 H 0.207 0.793 32 H 0.209 0.791 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.224 -8.095 -9.101 12.600 hybrid contribution -0.038 1.372 0.360 1.419 sum -3.262 -6.724 -8.741 11.500 Atomic orbital electron populations 1.69971 1.06342 1.27823 1.47978 1.25398 0.95537 1.01073 0.93380 0.86094 0.79267 0.80467 0.78945 1.20268 1.20276 1.19463 1.20645 0.93290 0.90396 1.52815 0.93100 1.18344 1.00587 0.94345 0.85808 1.30143 1.16543 1.10648 1.12987 1.05357 0.77115 0.72911 0.74834 1.93527 1.65964 1.58750 1.77513 1.93565 1.76462 1.53056 1.73535 1.85786 1.73387 1.52917 1.50618 1.18777 0.92315 0.90702 0.91493 1.21589 1.02559 0.95806 0.92429 1.21155 0.90656 0.93320 0.99904 1.21453 0.95201 1.00823 0.95902 1.43676 1.00897 0.99777 1.00773 1.94534 1.68620 1.55101 1.19821 1.94547 1.00692 1.63734 1.79175 1.21166 1.02788 0.91670 0.89138 1.21744 0.92280 0.98113 1.02365 1.23303 0.98394 0.97022 1.04949 1.22539 0.93999 1.00748 0.99973 0.92517 0.84344 0.83435 0.80581 0.79401 0.79345 0.79150 0.88129 0.89847 0.91493 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.10 12.99 21.45 0.28 -44.82 16 2 C 0.05 2.55 5.38 84.65 0.46 3.01 16 3 Si 0.93 41.80 29.55 68.60 2.03 43.83 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.53 -27.33 8.15 25.60 0.21 -27.12 16 8 H 0.05 2.71 7.83 -2.91 -0.02 2.69 16 9 C 0.01 0.49 1.32 -52.93 -0.07 0.42 16 10 C -0.57 -20.41 5.15 71.98 0.37 -20.04 16 11 S 2.60 95.03 4.91 -56.49 -0.28 94.75 16 12 O -0.96 -39.34 18.09 -118.57 -2.15 -41.48 16 13 O -0.97 -40.67 15.89 -118.57 -1.88 -42.55 16 14 O -0.67 -19.40 10.05 -61.50 -0.62 -20.02 16 15 C 0.11 2.83 4.80 22.51 0.11 2.94 16 16 C -0.10 -2.41 9.05 22.37 0.20 -2.20 16 17 C -0.03 -0.66 9.55 22.26 0.21 -0.45 16 18 C -0.05 -1.16 6.85 36.39 0.25 -0.92 16 19 N 0.03 0.80 4.45 -46.44 -0.21 0.60 16 20 O -0.17 -4.49 18.44 18.89 0.35 -4.14 16 21 O -0.17 -4.57 18.44 18.88 0.35 -4.23 16 22 C -0.03 -0.59 9.55 22.25 0.21 -0.38 16 23 C -0.12 -2.66 8.54 22.37 0.19 -2.47 16 24 C -0.20 -7.82 9.96 30.62 0.30 -7.51 16 25 C -0.13 -5.41 9.50 30.62 0.29 -5.12 16 26 H 0.27 13.05 8.32 -92.71 -0.77 12.28 16 27 H 0.14 4.96 6.98 -2.39 -0.02 4.95 16 28 H 0.15 3.97 8.09 -2.39 -0.02 3.95 16 29 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16 30 H 0.19 2.98 7.60 -2.91 -0.02 2.96 16 31 H 0.19 3.00 7.60 -2.91 -0.02 2.98 16 32 H 0.19 2.95 7.60 -2.91 -0.02 2.93 16 33 H 0.10 3.43 8.14 -2.38 -0.02 3.41 16 34 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 35 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.09 3.25 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -65.20 336.58 1.73 -63.47 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 1.12 Total: 14.44 kcal Atomic # 6 Polarization: -62.57 SS G_CDS: 2.74 Total: -59.84 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.07 Total: -44.22 kcal Atomic # 8 Polarization: -108.47 SS G_CDS: -3.95 Total: -112.42 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 95.03 SS G_CDS: -0.28 Total: 94.75 kcal Total: -65.20 1.73 -63.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809385037.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.003 kcal (2) G-P(sol) polarization free energy of solvation -65.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds