Wall clock time and date at job start Tue Mar 31 2020 14:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33389 * 125.20623 * 2 1 4 4 C 1.38428 * 114.92059 * 179.97438 * 3 2 1 5 5 C 1.50698 * 122.53410 * 179.97438 * 4 3 2 6 6 C 1.33389 * 114.92218 * 0.24251 * 4 3 2 7 7 S 1.76191 * 125.20067 * 179.75832 * 6 4 3 8 8 O 1.42104 * 106.40288 * 197.24005 * 7 6 4 9 9 O 1.42102 * 106.40647 * 330.15649 * 7 6 4 10 10 N 1.65593 * 107.22015 * 83.70020 * 7 6 4 11 11 C 1.40572 * 120.00118 * 64.99967 * 10 7 6 12 12 C 1.40654 * 126.07483 * 45.02207 * 11 10 7 13 13 N 1.30933 * 108.40334 * 180.02562 * 12 11 10 14 14 N 1.40074 * 108.40059 * 0.02562 * 13 12 11 15 15 C 1.37308 * 126.07900 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99871 * 179.97438 * 15 14 13 17 17 C 1.38977 * 120.00094 * 359.96525 * 15 14 13 18 18 N 1.31305 * 120.00151 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00158 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46903 * 60.00015 * 19 17 15 21 21 H 1.48490 * 109.47376 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46932 * 300.00782 * 19 17 15 23 23 C 1.35640 * 126.07741 * 224.72006 * 11 10 7 24 24 S 1.75884 * 109.59180 * 359.63649 * 6 4 3 25 25 H 1.09005 * 109.46980 * 90.00326 * 1 2 3 26 26 H 1.09003 * 109.47403 * 209.99886 * 1 2 3 27 27 H 1.09005 * 109.47230 * 330.00556 * 1 2 3 28 28 H 1.07997 * 122.53524 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47360 * 96.21192 * 5 4 3 30 30 H 1.09000 * 109.47497 * 336.20786 * 5 4 3 31 31 H 1.09005 * 109.46817 * 216.20845 * 5 4 3 32 32 H 0.96999 * 120.00235 * 244.99782 * 10 7 6 33 33 H 1.08000 * 125.80056 * 359.97297 * 12 11 10 34 34 H 0.96993 * 119.99927 * 179.97438 * 18 17 15 35 35 H 1.08001 * 126.24352 * 359.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8427 0.0006 5 6 4.6623 1.9481 0.0001 6 6 3.9751 -0.4479 -0.0041 7 16 5.6247 -1.0667 -0.0107 8 8 5.5419 -2.4255 -0.4184 9 8 6.4138 -0.0987 -0.6887 10 7 6.1493 -1.0809 1.5598 11 6 5.5334 -1.9262 2.4990 12 6 5.1975 -3.2777 2.3020 13 7 4.6409 -3.7294 3.3977 14 7 4.5989 -2.6882 4.3338 15 6 4.0890 -2.7651 5.6064 16 1 4.1072 -1.8972 6.2488 17 6 3.5492 -3.9599 6.0677 18 7 3.5274 -5.0152 5.2868 19 14 2.8549 -4.0643 7.7988 20 1 1.7453 -3.0886 7.9467 21 1 2.3441 -5.4366 8.0453 22 1 3.9239 -3.7506 8.7807 23 6 5.1625 -1.5850 3.7584 24 16 2.5209 -1.4372 0.0009 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8901 0.5138 28 1 1.8669 2.0894 -0.0004 29 1 4.9906 2.1398 1.0217 30 1 4.2197 2.8535 -0.4152 31 1 5.5176 1.6505 -0.6066 32 1 6.8817 -0.5059 1.8318 33 1 5.3688 -3.8462 1.3998 34 1 3.1510 -5.8491 5.6089 35 1 5.2869 -0.6168 4.2205 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814210921.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:53 Heat of formation + Delta-G solvation = 35.688965 kcal Electronic energy + Delta-G solvation = -23380.443328 eV Core-core repulsion = 19827.146826 eV Total energy + Delta-G solvation = -3553.296503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.57750 -38.41002 -36.78852 -35.49957 -34.54159 -33.06416 -32.80477 -30.30720 -28.32382 -27.43519 -27.00509 -24.83202 -21.75466 -20.79606 -20.19895 -19.97738 -18.70359 -17.62026 -17.34656 -16.89490 -15.79157 -15.53908 -15.41701 -14.61446 -14.36967 -14.23155 -13.90425 -13.42037 -13.32699 -13.11802 -13.06041 -13.03451 -12.20687 -12.13143 -11.94351 -11.77132 -11.76160 -11.68102 -11.58761 -11.34362 -11.24700 -10.93974 -10.73268 -10.61523 -10.53905 -10.13349 -9.38531 -8.89793 -8.83280 -8.21735 -8.15718 -7.06078 -6.63920 -4.34345 0.58641 0.88849 1.68265 2.01578 2.53969 2.91591 3.00351 3.04309 3.43911 3.47260 3.79091 4.05012 4.09822 4.63668 4.66235 4.91950 4.96102 5.10483 5.26150 5.34293 5.35930 5.47054 5.68047 5.71970 6.00187 6.08422 6.09013 6.27648 6.33564 6.40930 6.52049 6.82794 7.08891 7.27791 7.56485 7.76964 8.13157 8.58961 9.26227 9.52186 10.31588 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.004674 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.305847 B = 5988.762793 C = 6938.653468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.154 4.154 3 C -0.171 4.171 4 C 0.037 3.963 5 C -0.145 4.145 6 C -0.788 4.788 7 S 2.712 3.288 8 O -0.951 6.951 9 O -0.971 6.971 10 N -1.008 6.008 11 C -0.065 4.065 12 C -0.039 4.039 13 N -0.250 5.250 14 N -0.140 5.140 15 C -0.323 4.323 16 H 0.117 0.883 17 C 0.048 3.952 18 N -0.768 5.768 19 Si 0.934 3.066 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.266 1.266 23 C -0.058 4.058 24 S 0.238 5.762 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.141 0.859 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.411 0.589 33 H 0.169 0.831 34 H 0.277 0.723 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 11.061 -6.882 13.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.274 4.274 3 C -0.201 4.201 4 C 0.020 3.980 5 C -0.204 4.204 6 C -0.989 4.989 7 S 2.800 3.200 8 O -0.941 6.941 9 O -0.961 6.961 10 N -0.761 5.761 11 C -0.174 4.174 12 C -0.217 4.217 13 N -0.080 5.080 14 N 0.093 4.907 15 C -0.455 4.455 16 H 0.135 0.865 17 C -0.170 4.170 18 N -0.394 5.394 19 Si 0.758 3.242 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.191 1.191 23 C -0.212 4.212 24 S 0.507 5.493 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.159 0.841 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.129 0.871 32 H 0.247 0.753 33 H 0.186 0.814 34 H 0.087 0.913 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.161 7.805 -7.138 11.366 hybrid contribution -0.047 2.830 0.934 2.981 sum -4.208 10.635 -6.204 13.012 Atomic orbital electron populations 1.20440 0.87558 1.03737 1.02977 1.25132 1.00621 0.97893 1.03774 1.20083 0.92352 0.99412 1.08294 1.18522 0.95040 0.92558 0.91853 1.21279 0.98866 0.96055 1.04205 1.35582 1.27460 1.06430 1.29455 1.01753 0.72201 0.73530 0.72548 1.93559 1.86374 1.33529 1.80647 1.93458 1.67799 1.62355 1.72498 1.52075 1.44042 1.52771 1.27244 1.16746 1.17490 0.90723 0.92407 1.24072 1.05743 0.92414 0.99477 1.78279 1.23494 1.09563 0.96671 1.44631 1.31460 1.05241 1.09337 1.19864 1.39459 0.99585 0.86636 0.86532 1.25639 0.96281 0.94756 1.00302 1.70190 1.33318 1.00830 1.35062 0.85900 0.79529 0.78350 0.80437 1.19149 1.20063 1.19090 1.21653 1.09928 0.93966 0.95633 1.84416 0.91853 1.04943 1.68061 0.90277 0.90724 0.90263 0.84129 0.90094 0.90772 0.87115 0.75350 0.81371 0.91254 0.83518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 10.38 36.00 0.37 -0.51 16 2 C -0.15 -2.11 6.51 -36.00 -0.23 -2.35 16 3 C -0.17 -2.28 9.83 -41.21 -0.41 -2.68 16 4 C 0.04 0.55 5.80 -106.25 -0.62 -0.06 16 5 C -0.15 -1.80 9.67 36.00 0.35 -1.45 16 6 C -0.79 -13.44 6.51 29.04 0.19 -13.25 16 7 S 2.71 48.41 5.64 -107.50 -0.61 47.81 16 8 O -0.95 -19.58 15.66 -57.17 -0.90 -20.47 16 9 O -0.97 -17.10 15.03 -57.17 -0.86 -17.96 16 10 N -1.01 -17.80 5.93 32.32 0.19 -17.61 16 11 C -0.06 -1.40 6.57 -83.86 -0.55 -1.95 16 12 C -0.04 -0.95 11.16 -17.02 -0.19 -1.14 16 13 N -0.25 -6.86 10.40 30.81 0.32 -6.54 16 14 N -0.14 -3.65 3.74 -11.40 -0.04 -3.69 16 15 C -0.32 -8.17 10.25 -14.82 -0.15 -8.32 16 16 H 0.12 2.63 7.83 -52.49 -0.41 2.22 16 17 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -20.55 11.81 55.49 0.66 -19.89 16 19 Si 0.93 18.22 29.55 -169.99 -5.02 13.20 16 20 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 21 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 23 C -0.06 -1.32 11.50 -16.36 -0.19 -1.51 16 24 S 0.24 4.00 23.14 -107.50 -2.49 1.52 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.11 1.50 5.29 -51.93 -0.27 1.22 16 32 H 0.41 5.95 8.96 -34.47 -0.31 5.64 16 33 H 0.17 4.00 6.79 -52.49 -0.36 3.64 16 34 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.15 2.82 8.06 -52.49 -0.42 2.39 16 LS Contribution 329.87 15.07 4.97 4.97 Total: -1.00 -32.12 329.87 -8.74 -40.86 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -3.44 Total: 9.94 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: -1.52 Total: -32.13 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 1.13 Total: -47.73 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -1.76 Total: -38.43 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.20 kcal Atomic # 16 Polarization: 52.42 SS G_CDS: -3.09 Total: 49.33 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.12 -8.74 -40.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814210921.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.545 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds