Wall clock time and date at job start Tue Mar 31 2020 14:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33389 * 125.20623 * 2 1 4 4 C 1.38428 * 114.92059 * 179.97438 * 3 2 1 5 5 C 1.50698 * 122.53410 * 179.97438 * 4 3 2 6 6 C 1.33389 * 114.92218 * 0.24251 * 4 3 2 7 7 S 1.76191 * 125.20067 * 179.75832 * 6 4 3 8 8 O 1.42104 * 106.40288 * 197.24005 * 7 6 4 9 9 O 1.42102 * 106.40647 * 330.15649 * 7 6 4 10 10 N 1.65593 * 107.22015 * 83.70020 * 7 6 4 11 11 C 1.40572 * 120.00118 * 64.99967 * 10 7 6 12 12 C 1.40654 * 126.07483 * 45.02207 * 11 10 7 13 13 N 1.30933 * 108.40334 * 180.02562 * 12 11 10 14 14 N 1.40074 * 108.40059 * 0.02562 * 13 12 11 15 15 C 1.37308 * 126.07900 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99871 * 179.97438 * 15 14 13 17 17 C 1.38977 * 120.00094 * 359.96525 * 15 14 13 18 18 N 1.31305 * 120.00151 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00158 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46903 * 60.00015 * 19 17 15 21 21 H 1.48490 * 109.47376 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46932 * 300.00782 * 19 17 15 23 23 C 1.35640 * 126.07741 * 224.72006 * 11 10 7 24 24 S 1.75884 * 109.59180 * 359.63649 * 6 4 3 25 25 H 1.09005 * 109.46980 * 90.00326 * 1 2 3 26 26 H 1.09003 * 109.47403 * 209.99886 * 1 2 3 27 27 H 1.09005 * 109.47230 * 330.00556 * 1 2 3 28 28 H 1.07997 * 122.53524 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47360 * 96.21192 * 5 4 3 30 30 H 1.09000 * 109.47497 * 336.20786 * 5 4 3 31 31 H 1.09005 * 109.46817 * 216.20845 * 5 4 3 32 32 H 0.96999 * 120.00235 * 244.99782 * 10 7 6 33 33 H 1.08000 * 125.80056 * 359.97297 * 12 11 10 34 34 H 0.96993 * 119.99927 * 179.97438 * 18 17 15 35 35 H 1.08001 * 126.24352 * 359.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8427 0.0006 5 6 4.6623 1.9481 0.0001 6 6 3.9751 -0.4479 -0.0041 7 16 5.6247 -1.0667 -0.0107 8 8 5.5419 -2.4255 -0.4184 9 8 6.4138 -0.0987 -0.6887 10 7 6.1493 -1.0809 1.5598 11 6 5.5334 -1.9262 2.4990 12 6 5.1975 -3.2777 2.3020 13 7 4.6409 -3.7294 3.3977 14 7 4.5989 -2.6882 4.3338 15 6 4.0890 -2.7651 5.6064 16 1 4.1072 -1.8972 6.2488 17 6 3.5492 -3.9599 6.0677 18 7 3.5274 -5.0152 5.2868 19 14 2.8549 -4.0643 7.7988 20 1 1.7453 -3.0886 7.9467 21 1 2.3441 -5.4366 8.0453 22 1 3.9239 -3.7506 8.7807 23 6 5.1625 -1.5850 3.7584 24 16 2.5209 -1.4372 0.0009 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8901 0.5138 28 1 1.8669 2.0894 -0.0004 29 1 4.9906 2.1398 1.0217 30 1 4.2197 2.8535 -0.4152 31 1 5.5176 1.6505 -0.6066 32 1 6.8817 -0.5059 1.8318 33 1 5.3688 -3.8462 1.3998 34 1 3.1510 -5.8491 5.6089 35 1 5.2869 -0.6168 4.2205 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814210921.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:52 Heat of formation + Delta-G solvation = 13.572827 kcal Electronic energy + Delta-G solvation = -23381.402356 eV Core-core repulsion = 19827.146826 eV Total energy + Delta-G solvation = -3554.255530 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.43127 -39.53602 -38.25191 -37.00529 -36.22674 -34.82244 -33.80735 -32.20397 -29.30052 -29.22157 -28.08467 -26.68965 -22.79038 -22.65347 -21.75125 -21.43467 -20.27862 -19.17497 -18.64170 -18.40704 -17.46814 -17.16610 -16.79685 -16.10071 -15.62578 -15.36645 -15.30937 -15.21862 -14.90091 -14.33161 -14.05633 -13.95511 -13.78716 -13.52171 -13.37582 -13.31901 -13.19920 -12.96411 -12.85006 -12.76517 -12.68918 -12.56050 -12.13996 -11.95272 -11.76732 -11.69498 -11.16371 -10.69979 -10.12084 -10.00525 -9.42026 -8.84954 -8.46085 -6.26399 -0.70438 -0.40141 0.46883 0.86331 1.31759 1.41307 1.45210 1.57074 1.76828 1.97504 2.19433 2.21989 2.64311 2.88993 3.09877 3.55022 3.66951 4.11100 4.25409 4.32753 4.43431 4.51969 4.56356 4.64937 4.72417 4.76293 4.95269 4.98855 4.99619 5.15759 5.26725 5.27412 5.44474 5.51543 5.92631 6.09580 6.35513 6.75890 7.43731 7.63186 8.52399 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.004674 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.305847 B = 5988.762793 C = 6938.653468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.132 4.132 3 C -0.176 4.176 4 C 0.050 3.950 5 C -0.151 4.151 6 C -0.815 4.815 7 S 2.730 3.270 8 O -0.986 6.986 9 O -0.967 6.967 10 N -1.003 6.003 11 C -0.044 4.044 12 C -0.057 4.057 13 N -0.296 5.296 14 N -0.163 5.163 15 C -0.353 4.353 16 H 0.140 0.860 17 C -0.001 4.001 18 N -0.820 5.820 19 Si 1.014 2.986 20 H -0.254 1.254 21 H -0.278 1.278 22 H -0.255 1.255 23 C -0.056 4.056 24 S 0.154 5.846 25 H 0.101 0.899 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.182 0.818 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.427 0.573 33 H 0.164 0.836 34 H 0.277 0.723 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.603 14.649 -6.116 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.252 4.252 3 C -0.206 4.206 4 C 0.032 3.968 5 C -0.209 4.209 6 C -1.018 5.018 7 S 2.820 3.180 8 O -0.976 6.976 9 O -0.958 6.958 10 N -0.758 5.758 11 C -0.153 4.153 12 C -0.235 4.235 13 N -0.126 5.126 14 N 0.069 4.931 15 C -0.485 4.485 16 H 0.157 0.843 17 C -0.214 4.214 18 N -0.448 5.448 19 Si 0.833 3.167 20 H -0.178 1.178 21 H -0.203 1.203 22 H -0.179 1.179 23 C -0.209 4.209 24 S 0.421 5.579 25 H 0.119 0.881 26 H 0.089 0.911 27 H 0.123 0.877 28 H 0.199 0.801 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.265 0.735 33 H 0.181 0.819 34 H 0.087 0.913 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.141 11.416 -6.372 14.048 hybrid contribution 0.275 1.918 0.503 2.002 sum -4.865 13.334 -5.869 15.359 Atomic orbital electron populations 1.20643 0.84816 1.04780 1.04714 1.25581 1.02092 0.95771 1.01731 1.20508 0.91516 1.01024 1.07527 1.19063 0.96609 0.92239 0.88848 1.21429 0.97910 0.96360 1.05193 1.35220 1.25980 1.07293 1.33292 1.00787 0.72459 0.72741 0.72015 1.93520 1.87094 1.35812 1.81161 1.93470 1.68235 1.61932 1.72123 1.51951 1.44930 1.52526 1.26420 1.16647 1.15923 0.89986 0.92715 1.24131 1.06426 0.93967 0.98949 1.78186 1.25066 1.11491 0.97902 1.44870 1.32817 1.05717 1.09720 1.20559 1.40091 1.00895 0.86928 0.84280 1.26787 0.95951 0.93922 1.04692 1.70363 1.35207 1.01649 1.37581 0.84717 0.79056 0.78260 0.74622 1.17838 1.20302 1.17854 1.22287 1.08358 0.94528 0.95684 1.84722 0.94158 1.08448 1.70548 0.88062 0.91118 0.87652 0.80127 0.88486 0.87452 0.88386 0.73489 0.81858 0.91283 0.79971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 10.38 71.23 0.74 -0.81 16 2 C -0.13 -3.32 6.51 24.59 0.16 -3.16 16 3 C -0.18 -4.06 9.83 21.22 0.21 -3.85 16 4 C 0.05 1.35 5.80 -20.92 -0.12 1.23 16 5 C -0.15 -3.17 9.67 71.24 0.69 -2.48 16 6 C -0.81 -27.28 6.51 66.72 0.43 -26.85 16 7 S 2.73 97.35 5.64 -56.49 -0.32 97.03 16 8 O -0.99 -42.14 15.66 -128.00 -2.00 -44.15 16 9 O -0.97 -33.09 15.03 -128.00 -1.92 -35.01 16 10 N -1.00 -34.82 5.93 -51.65 -0.31 -35.13 16 11 C -0.04 -1.91 6.57 37.73 0.25 -1.66 16 12 C -0.06 -2.91 11.16 85.42 0.95 -1.96 16 13 N -0.30 -16.92 10.40 -56.45 -0.59 -17.51 16 14 N -0.16 -8.65 3.74 -189.98 -0.71 -9.36 16 15 C -0.35 -17.97 10.25 84.01 0.86 -17.11 16 16 H 0.14 6.13 7.83 -2.91 -0.02 6.11 16 17 C 0.00 -0.06 5.50 84.95 0.47 0.41 16 18 N -0.82 -45.60 11.81 21.66 0.26 -45.35 16 19 Si 1.01 37.20 29.55 68.60 2.03 39.22 16 20 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 21 H -0.28 -10.15 7.11 99.48 0.71 -9.44 16 22 H -0.25 -8.76 7.11 99.48 0.71 -8.06 16 23 C -0.06 -2.49 11.50 83.35 0.96 -1.53 16 24 S 0.15 5.26 23.14 -56.49 -1.31 3.95 16 25 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.11 1.55 8.10 -2.39 -0.02 1.54 16 31 H 0.10 2.38 5.29 -2.38 -0.01 2.37 16 32 H 0.43 11.72 8.96 -96.75 -0.87 10.85 16 33 H 0.16 8.30 6.79 -2.91 -0.02 8.28 16 34 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.18 6.55 8.06 -2.91 -0.02 6.53 16 Total: -1.00 -73.14 329.87 1.01 -72.13 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.29 Total: 31.94 kcal Atomic # 6 Polarization: -63.36 SS G_CDS: 5.60 Total: -57.77 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -1.35 Total: -107.35 kcal Atomic # 8 Polarization: -75.23 SS G_CDS: -3.93 Total: -79.16 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.22 kcal Atomic # 16 Polarization: 102.61 SS G_CDS: -1.63 Total: 100.99 kcal Total: -73.14 1.01 -72.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814210921.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.702 kcal (2) G-P(sol) polarization free energy of solvation -73.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds