Wall clock time and date at job start Tue Mar 31 2020 15:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00199 * 2 1 4 4 H 1.48500 * 109.47598 * 270.00501 * 3 2 1 5 5 H 1.48499 * 109.46896 * 30.00739 * 3 2 1 6 6 H 1.48508 * 109.47096 * 150.00303 * 3 2 1 7 7 C 1.37886 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99508 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46812 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47134 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47406 * 179.97438 * 11 10 9 13 13 C 1.46899 * 111.00606 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47465 * 179.97438 * 13 12 11 15 15 H 1.08993 * 109.47329 * 305.00722 * 14 13 12 16 16 O 1.42903 * 109.46738 * 65.00236 * 14 13 12 17 17 C 1.50695 * 109.47000 * 184.99847 * 14 13 12 18 18 C 1.38236 * 120.01198 * 265.02534 * 17 14 13 19 19 C 1.38213 * 120.01533 * 179.97438 * 18 17 14 20 20 C 1.38272 * 120.01798 * 359.97438 * 19 18 17 21 21 C 1.38195 * 120.00791 * 0.02562 * 20 19 18 22 22 C 1.38311 * 120.00213 * 85.00610 * 17 14 13 23 23 Br 1.89101 * 120.00951 * 359.97438 * 22 17 14 24 24 H 0.97002 * 119.99838 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47441 * 60.00394 * 9 7 2 26 26 H 1.08995 * 109.47351 * 300.00117 * 9 7 2 27 27 H 1.09000 * 109.46989 * 59.99880 * 10 9 7 28 28 H 1.09003 * 109.46775 * 300.00068 * 10 9 7 29 29 H 1.09000 * 109.47528 * 59.99907 * 11 10 9 30 30 H 1.09008 * 109.47012 * 300.00032 * 11 10 9 31 31 H 1.00899 * 111.00026 * 303.95514 * 12 11 10 32 32 H 1.09002 * 109.46621 * 59.99841 * 13 12 11 33 33 H 1.09003 * 109.47005 * 300.00370 * 13 12 11 34 34 H 0.96707 * 114.00123 * 60.00285 * 16 14 13 35 35 H 1.08010 * 119.99178 * 359.97438 * 18 17 14 36 36 H 1.08002 * 119.99555 * 180.02562 * 19 18 17 37 37 H 1.07995 * 119.98979 * 180.27903 * 20 19 18 38 38 H 1.07996 * 120.00037 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6525 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4346 -6.1037 -0.0018 13 6 1.7343 -7.3951 -0.0018 14 6 2.7592 -8.5311 -0.0031 15 1 3.4396 -8.4056 -0.8453 16 8 3.5019 -8.5038 1.2174 17 6 2.0446 -9.8520 -0.1269 18 6 1.7317 -10.5778 1.0072 19 6 1.0758 -11.7892 0.8937 20 6 0.7319 -12.2754 -0.3541 21 6 1.0443 -11.5505 -1.4885 22 6 1.7014 -10.3383 -1.3754 23 35 2.1280 -9.3454 -2.9272 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8718 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8906 29 1 0.8537 -5.0446 -0.8914 30 1 0.8531 -5.0451 0.8886 31 1 3.0694 -6.0363 -0.7831 32 1 1.1091 -7.4692 -0.8916 33 1 1.1097 -7.4697 0.8884 34 1 2.9590 -8.6102 2.0107 35 1 1.9998 -10.1982 1.9822 36 1 0.8311 -12.3558 1.7801 37 1 0.2155 -13.2197 -0.4420 38 1 0.7753 -11.9302 -2.4631 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819016504.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:27 Heat of formation + Delta-G solvation = -37.610046 kcal Electronic energy + Delta-G solvation = -18985.726329 eV Core-core repulsion = 15873.567423 eV Total energy + Delta-G solvation = -3112.158906 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16519 -37.59085 -35.76595 -33.48663 -32.92647 -31.82980 -31.09026 -29.69184 -27.97984 -25.68323 -23.44614 -22.76754 -22.06394 -21.41624 -20.03337 -17.95060 -16.64123 -16.23548 -16.15894 -15.50679 -15.29626 -14.61153 -14.58538 -14.31783 -14.04151 -13.80179 -13.42025 -13.21815 -12.57013 -12.21100 -12.00534 -11.72005 -11.64051 -11.44683 -11.35451 -11.15926 -10.82471 -10.55134 -10.54389 -10.46986 -10.24295 -9.65576 -9.36323 -9.25609 -9.07546 -8.97778 -8.31198 -8.12954 -5.96460 -3.98250 0.66263 0.83198 1.27667 3.15904 3.34744 3.40648 3.44881 3.99257 4.20383 4.37114 4.48703 4.51915 4.70209 4.84723 4.88619 4.96167 5.09095 5.22359 5.39382 5.44567 5.55612 5.65161 5.77117 5.82738 5.93486 5.97119 6.03991 6.35040 6.35362 6.75412 6.78414 7.17536 7.32069 7.45619 7.65029 7.72447 7.87485 8.04321 8.47836 9.09055 9.65549 11.15076 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.002528 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.521501 B =11072.299226 C =11699.398651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.680 5.680 13 C 0.034 3.966 14 C 0.143 3.857 15 H 0.115 0.885 16 O -0.537 6.537 17 C -0.086 4.086 18 C -0.106 4.106 19 C -0.101 4.101 20 C -0.118 4.118 21 C -0.089 4.089 22 C -0.087 4.087 23 Br -0.043 7.043 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.339 0.661 32 H 0.040 0.960 33 H 0.074 0.926 34 H 0.371 0.629 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.553 -29.522 -2.596 29.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.069 4.069 12 N -0.310 5.310 13 C -0.096 4.096 14 C 0.083 3.917 15 H 0.132 0.868 16 O -0.342 6.342 17 C -0.089 4.089 18 C -0.125 4.125 19 C -0.119 4.119 20 C -0.137 4.137 21 C -0.109 4.109 22 C -0.166 4.166 23 Br 0.043 6.957 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.156 0.844 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.219 0.781 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.142 -28.922 -2.906 29.147 hybrid contribution -0.654 0.538 -0.308 0.901 sum 1.489 -28.385 -3.214 28.605 Atomic orbital electron populations 1.69970 1.06068 1.26520 1.51137 1.25035 0.94850 0.99266 0.95419 0.86594 0.79892 0.83466 0.78062 1.20715 1.21251 1.19828 1.21271 0.93086 0.91056 1.50202 0.92641 1.19065 0.94015 0.91398 0.97067 1.21618 0.99163 0.92844 1.00820 1.22141 0.94087 0.90823 0.99834 1.60473 1.20005 1.00582 1.49990 1.22568 0.95471 0.90037 1.01551 1.21002 0.93059 0.88421 0.89214 0.86760 1.86681 1.37007 1.95674 1.14851 1.20561 0.98202 0.97959 0.92132 1.20948 0.98493 0.95030 0.98015 1.21290 0.97020 0.95647 0.97934 1.21200 1.00222 1.00146 0.92093 1.21132 0.97048 0.92868 0.99827 1.21696 1.05563 0.97408 0.91944 1.96775 1.92942 1.72520 1.33479 0.93069 0.96851 0.96609 0.92451 0.93638 0.95808 0.91562 0.84371 0.94183 0.90742 0.78096 0.84905 0.85140 0.85056 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.27 5.41 -26.73 -0.14 -2.41 16 11 C 0.06 1.06 5.68 -3.83 -0.02 1.03 16 12 N -0.68 -10.23 6.45 -113.78 -0.73 -10.97 16 13 C 0.03 0.42 5.29 -3.83 -0.02 0.40 16 14 C 0.14 1.59 2.82 -27.89 -0.08 1.51 16 15 H 0.11 1.36 6.89 -51.93 -0.36 1.00 16 16 O -0.54 -6.21 12.94 -35.23 -0.46 -6.67 16 17 C -0.09 -0.84 5.07 -104.60 -0.53 -1.37 16 18 C -0.11 -0.85 9.30 -39.59 -0.37 -1.22 16 19 C -0.10 -0.68 10.05 -39.58 -0.40 -1.08 16 20 C -0.12 -0.80 10.05 -39.58 -0.40 -1.19 16 21 C -0.09 -0.72 9.79 -39.56 -0.39 -1.11 16 22 C -0.09 -0.85 6.22 -39.52 -0.25 -1.09 16 23 Br -0.04 -0.43 31.42 -68.01 -2.14 -2.57 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 31 H 0.34 4.93 8.73 -39.29 -0.34 4.59 16 32 H 0.04 0.51 7.68 -51.93 -0.40 0.11 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.37 3.06 7.33 45.56 0.33 3.40 16 35 H 0.13 0.81 6.41 -52.48 -0.34 0.47 16 36 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -32.29 338.44 -10.52 -42.81 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -4.87 Total: 1.89 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -3.14 Total: -19.93 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.00 Total: -37.69 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.46 Total: -6.67 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.14 Total: -2.57 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.29 -10.52 -42.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819016504.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.205 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds