Wall clock time and date at job start Tue Mar 31 2020 15:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00199 * 2 1 4 4 H 1.48500 * 109.47598 * 270.00501 * 3 2 1 5 5 H 1.48499 * 109.46896 * 30.00739 * 3 2 1 6 6 H 1.48508 * 109.47096 * 150.00303 * 3 2 1 7 7 C 1.37886 * 119.99664 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99508 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.53008 * 109.46812 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47134 * 180.02562 * 10 9 7 12 12 N 1.46897 * 109.47406 * 179.97438 * 11 10 9 13 13 C 1.46899 * 111.00606 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47465 * 179.97438 * 13 12 11 15 15 H 1.08993 * 109.47329 * 305.00722 * 14 13 12 16 16 O 1.42903 * 109.46738 * 65.00236 * 14 13 12 17 17 C 1.50695 * 109.47000 * 184.99847 * 14 13 12 18 18 C 1.38236 * 120.01198 * 265.02534 * 17 14 13 19 19 C 1.38213 * 120.01533 * 179.97438 * 18 17 14 20 20 C 1.38272 * 120.01798 * 359.97438 * 19 18 17 21 21 C 1.38195 * 120.00791 * 0.02562 * 20 19 18 22 22 C 1.38311 * 120.00213 * 85.00610 * 17 14 13 23 23 Br 1.89101 * 120.00951 * 359.97438 * 22 17 14 24 24 H 0.97002 * 119.99838 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47441 * 60.00394 * 9 7 2 26 26 H 1.08995 * 109.47351 * 300.00117 * 9 7 2 27 27 H 1.09000 * 109.46989 * 59.99880 * 10 9 7 28 28 H 1.09003 * 109.46775 * 300.00068 * 10 9 7 29 29 H 1.09000 * 109.47528 * 59.99907 * 11 10 9 30 30 H 1.09008 * 109.47012 * 300.00032 * 11 10 9 31 31 H 1.00899 * 111.00026 * 303.95514 * 12 11 10 32 32 H 1.09002 * 109.46621 * 59.99841 * 13 12 11 33 33 H 1.09003 * 109.47005 * 300.00370 * 13 12 11 34 34 H 0.96707 * 114.00123 * 60.00285 * 16 14 13 35 35 H 1.08010 * 119.99178 * 359.97438 * 18 17 14 36 36 H 1.08002 * 119.99555 * 180.02562 * 19 18 17 37 37 H 1.07995 * 119.98979 * 180.27903 * 20 19 18 38 38 H 1.07996 * 120.00037 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6525 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 7 2.4346 -6.1037 -0.0018 13 6 1.7343 -7.3951 -0.0018 14 6 2.7592 -8.5311 -0.0031 15 1 3.4396 -8.4056 -0.8453 16 8 3.5019 -8.5038 1.2174 17 6 2.0446 -9.8520 -0.1269 18 6 1.7317 -10.5778 1.0072 19 6 1.0758 -11.7892 0.8937 20 6 0.7319 -12.2754 -0.3541 21 6 1.0443 -11.5505 -1.4885 22 6 1.7014 -10.3383 -1.3754 23 35 2.1280 -9.3454 -2.9272 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8718 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8906 29 1 0.8537 -5.0446 -0.8914 30 1 0.8531 -5.0451 0.8886 31 1 3.0694 -6.0363 -0.7831 32 1 1.1091 -7.4692 -0.8916 33 1 1.1097 -7.4697 0.8884 34 1 2.9590 -8.6102 2.0107 35 1 1.9998 -10.1982 1.9822 36 1 0.8311 -12.3558 1.7801 37 1 0.2155 -13.2197 -0.4420 38 1 0.7753 -11.9302 -2.4631 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819016504.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:27 Heat of formation + Delta-G solvation = -59.211431 kcal Electronic energy + Delta-G solvation = -18986.663036 eV Core-core repulsion = 15873.567423 eV Total energy + Delta-G solvation = -3113.095612 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.83787 -38.50638 -37.10758 -35.34721 -33.76139 -33.06015 -32.27267 -30.39968 -29.29158 -27.26263 -24.72739 -23.61512 -23.27943 -22.31514 -21.70577 -18.66449 -18.50045 -17.46170 -16.91934 -16.55481 -16.48041 -16.23496 -15.44985 -15.37149 -15.30971 -14.58333 -14.42503 -14.24854 -14.21267 -13.65711 -13.41802 -13.07227 -12.75271 -12.65871 -12.47305 -12.40230 -12.26864 -12.09038 -11.87606 -11.55774 -11.46297 -11.30603 -11.19197 -10.93432 -10.55755 -9.90518 -9.70083 -9.37502 -8.20653 -6.31612 0.05390 0.24649 0.59424 1.39687 1.41266 1.52750 2.40773 2.56711 3.03678 3.12397 3.42489 3.74234 3.77828 3.95689 3.99371 4.16721 4.25142 4.32638 4.36592 4.43599 4.62738 4.63241 4.71377 4.79975 4.91018 4.97325 5.08368 5.21245 5.23473 5.35885 5.42790 5.51476 5.74314 5.82374 5.85332 5.98845 6.26484 6.38612 6.77350 6.85183 7.37550 8.91398 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.022403 B = 0.002528 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.521501 B =11072.299226 C =11699.398651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.026 3.974 10 C -0.092 4.092 11 C 0.073 3.927 12 N -0.680 5.680 13 C 0.038 3.962 14 C 0.154 3.846 15 H 0.103 0.897 16 O -0.552 6.552 17 C -0.104 4.104 18 C -0.113 4.113 19 C -0.100 4.100 20 C -0.114 4.114 21 C -0.099 4.099 22 C -0.102 4.102 23 Br -0.058 7.058 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.008 1.008 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.021 0.979 30 H 0.064 0.936 31 H 0.342 0.658 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.385 0.615 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.013 -30.769 -1.940 30.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.130 4.130 11 C -0.056 4.056 12 N -0.311 5.311 13 C -0.091 4.091 14 C 0.094 3.906 15 H 0.121 0.879 16 O -0.359 6.359 17 C -0.106 4.106 18 C -0.131 4.131 19 C -0.118 4.118 20 C -0.133 4.133 21 C -0.118 4.118 22 C -0.182 4.182 23 Br 0.027 6.973 24 H 0.073 0.927 25 H 0.008 0.992 26 H 0.011 0.989 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.160 0.840 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.235 0.765 35 H 0.167 0.833 36 H 0.177 0.823 37 H 0.177 0.823 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.608 -30.193 -2.245 30.388 hybrid contribution -0.843 0.826 -0.476 1.273 sum 1.765 -29.367 -2.721 29.545 Atomic orbital electron populations 1.70098 1.07801 1.27792 1.51752 1.26001 0.95806 1.03416 0.94701 0.85434 0.78673 0.78342 0.78531 1.19720 1.20578 1.18776 1.21707 0.93543 0.92438 1.50476 0.92292 1.18963 0.94386 0.93071 0.94744 1.21369 0.98017 0.92887 1.00730 1.21837 0.93904 0.90199 0.99635 1.60406 1.19552 1.00923 1.50233 1.22592 0.95823 0.89095 1.01636 1.20758 0.92328 0.88735 0.88800 0.87931 1.86644 1.37889 1.95749 1.15596 1.20473 0.99467 0.97761 0.92936 1.21243 0.98294 0.95446 0.98135 1.21672 0.95838 0.95165 0.99079 1.21592 0.99288 1.00816 0.91564 1.21382 0.96899 0.92457 1.01111 1.21826 1.06711 0.98195 0.91447 1.96749 1.93133 1.73049 1.34332 0.92739 0.99156 0.98930 0.92816 0.93265 0.96096 0.91774 0.84028 0.94409 0.90234 0.76539 0.83250 0.82330 0.82275 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.95 13.29 21.45 0.28 -57.67 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.54 -31.94 9.11 25.60 0.23 -31.71 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.42 4.97 29.85 0.15 1.56 16 10 C -0.09 -3.96 5.41 30.59 0.17 -3.79 16 11 C 0.07 2.61 5.68 86.30 0.49 3.10 16 12 N -0.68 -20.18 6.45 -513.90 -3.31 -23.50 16 13 C 0.04 0.93 5.29 86.30 0.46 1.38 16 14 C 0.15 3.33 2.82 29.85 0.08 3.41 16 15 H 0.10 2.44 6.89 -2.39 -0.02 2.42 16 16 O -0.55 -12.16 12.94 -148.98 -1.93 -14.09 16 17 C -0.10 -1.93 5.07 -19.85 -0.10 -2.03 16 18 C -0.11 -1.57 9.30 22.26 0.21 -1.37 16 19 C -0.10 -1.05 10.05 22.27 0.22 -0.83 16 20 C -0.11 -1.22 10.05 22.27 0.22 -1.00 16 21 C -0.10 -1.44 9.79 22.28 0.22 -1.22 16 22 C -0.10 -1.92 6.22 22.31 0.14 -1.78 16 23 Br -0.06 -1.18 31.42 -20.37 -0.64 -1.82 16 24 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 25 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.34 9.85 8.73 -89.69 -0.78 9.06 16 32 H 0.04 0.95 7.68 -2.39 -0.02 0.93 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.38 5.77 7.33 -74.05 -0.54 5.23 16 35 H 0.15 1.46 6.41 -2.91 -0.02 1.44 16 36 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 37 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 38 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -69.40 338.44 -0.88 -70.27 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -0.26 Total: 13.49 kcal Atomic # 6 Polarization: -36.86 SS G_CDS: 2.95 Total: -33.91 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -3.03 Total: -81.17 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -1.93 Total: -14.09 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 35 Polarization: -1.18 SS G_CDS: -0.64 Total: -1.82 kcal Total: -69.40 -0.88 -70.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819016504.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.062 kcal (2) G-P(sol) polarization free energy of solvation -69.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds