Wall clock time and date at job start Tue Mar 31 2020 15:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99646 * 2 1 4 4 H 1.48499 * 109.46917 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46978 * 299.99784 * 3 2 1 6 6 H 1.48496 * 109.47253 * 59.99901 * 3 2 1 7 7 C 1.37876 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99501 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47380 * 180.02562 * 10 9 7 12 12 N 1.46895 * 109.47035 * 180.02562 * 11 10 9 13 13 C 1.46906 * 110.99789 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47053 * 179.97438 * 13 12 11 15 15 H 1.09004 * 109.47006 * 60.00213 * 14 13 12 16 16 O 1.42896 * 109.47217 * 300.00068 * 14 13 12 17 17 C 1.50696 * 109.46999 * 179.97438 * 14 13 12 18 18 C 1.38242 * 120.00592 * 94.72456 * 17 14 13 19 19 C 1.38222 * 120.01260 * 179.74400 * 18 17 14 20 20 C 1.38261 * 120.01773 * 0.55527 * 19 18 17 21 21 C 1.38194 * 120.01117 * 359.70014 * 20 19 18 22 22 C 1.38303 * 120.00616 * 275.00541 * 17 14 13 23 23 Br 1.89094 * 120.01215 * 359.97438 * 22 17 14 24 24 H 0.97000 * 120.00251 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47219 * 60.00292 * 9 7 2 26 26 H 1.08996 * 109.47673 * 300.00339 * 9 7 2 27 27 H 1.09007 * 109.47281 * 59.99921 * 10 9 7 28 28 H 1.09005 * 109.47003 * 300.00423 * 10 9 7 29 29 H 1.08996 * 109.46863 * 59.99866 * 11 10 9 30 30 H 1.09002 * 109.46661 * 300.00043 * 11 10 9 31 31 H 1.00899 * 111.00672 * 56.04786 * 12 11 10 32 32 H 1.08992 * 109.47459 * 299.99826 * 13 12 11 33 33 H 1.09004 * 109.47040 * 59.99976 * 13 12 11 34 34 H 0.96699 * 114.00604 * 300.00154 * 16 14 13 35 35 H 1.08010 * 119.99024 * 0.02562 * 18 17 14 36 36 H 1.08001 * 119.98624 * 180.27405 * 19 18 17 37 37 H 1.08002 * 119.99349 * 179.71748 * 20 19 18 38 38 H 1.07998 * 120.00769 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4350 -6.1036 -0.0006 13 6 1.7347 -7.3950 -0.0005 14 6 2.7597 -8.5309 -0.0005 15 1 3.3846 -8.4564 0.8895 16 8 3.5790 -8.4333 -1.1673 17 6 2.0414 -9.8556 0.0001 18 6 1.7981 -10.5107 -1.1927 19 6 1.1439 -11.7283 -1.1918 20 6 0.7223 -12.2862 0.0010 21 6 0.9604 -11.6296 1.1934 22 6 1.6202 -10.4135 1.1935 23 35 1.9462 -9.5145 2.8249 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.8720 -3.6043 0.8895 28 1 2.8720 -3.6042 -0.8905 29 1 0.8540 -5.0446 -0.8914 30 1 0.8534 -5.0451 0.8886 31 1 3.0693 -6.0366 0.7812 32 1 1.1096 -7.4693 0.8891 33 1 1.1102 -7.4696 -0.8908 34 1 3.0883 -8.4918 -1.9985 35 1 2.1233 -10.0732 -2.1251 36 1 0.9580 -12.2419 -2.1235 37 1 0.2072 -13.2354 0.0008 38 1 0.6315 -12.0655 2.1251 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819016505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:31 Heat of formation + Delta-G solvation = -37.561290 kcal Electronic energy + Delta-G solvation = -18983.190178 eV Core-core repulsion = 15871.033386 eV Total energy + Delta-G solvation = -3112.156792 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16011 -37.58879 -35.74955 -33.47934 -32.93028 -31.82704 -31.08955 -29.69255 -27.98303 -25.69003 -23.43823 -22.76455 -22.05664 -21.40972 -20.03365 -17.93793 -16.64252 -16.24694 -16.15323 -15.51342 -15.29057 -14.60566 -14.58125 -14.30020 -14.04763 -13.80428 -13.40979 -13.21620 -12.58489 -12.21526 -12.01386 -11.70739 -11.63917 -11.42733 -11.35609 -11.15470 -10.83497 -10.55193 -10.53267 -10.46658 -10.23232 -9.65932 -9.36595 -9.25490 -9.07060 -8.97030 -8.31662 -8.12931 -5.96676 -3.98441 0.66458 0.83419 1.27463 3.16110 3.33652 3.40883 3.45877 3.99509 4.21167 4.37474 4.48758 4.52170 4.70927 4.84318 4.88965 4.96831 5.09112 5.22763 5.39243 5.45116 5.56495 5.64955 5.77242 5.82752 5.93307 5.97290 6.04526 6.34987 6.35565 6.75283 6.78390 7.17502 7.31928 7.47125 7.65429 7.72572 7.87320 8.04192 8.47750 9.09146 9.65491 11.14882 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.022437 B = 0.002507 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.616139 B =11167.523632 C =11792.292652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.106 4.106 11 C 0.059 3.941 12 N -0.679 5.679 13 C 0.033 3.967 14 C 0.143 3.857 15 H 0.114 0.886 16 O -0.536 6.536 17 C -0.085 4.085 18 C -0.106 4.106 19 C -0.100 4.100 20 C -0.118 4.118 21 C -0.089 4.089 22 C -0.086 4.086 23 Br -0.043 7.043 24 H 0.259 0.741 25 H 0.016 0.984 26 H 0.013 0.987 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.339 0.661 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.372 0.628 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.487 -29.620 2.032 29.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.144 4.144 11 C -0.069 4.069 12 N -0.310 5.310 13 C -0.097 4.097 14 C 0.083 3.917 15 H 0.132 0.868 16 O -0.341 6.341 17 C -0.088 4.088 18 C -0.125 4.125 19 C -0.119 4.119 20 C -0.137 4.137 21 C -0.109 4.109 22 C -0.166 4.166 23 Br 0.042 6.958 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.031 0.969 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.042 0.958 31 H 0.157 0.843 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.220 0.780 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.016 -29.084 2.413 29.253 hybrid contribution -0.629 0.579 0.236 0.887 sum 1.387 -28.505 2.648 28.661 Atomic orbital electron populations 1.69979 1.06064 1.26412 1.51237 1.25036 0.94850 0.99280 0.95431 0.86540 0.80177 0.83803 0.77523 1.19698 1.21026 1.21074 1.21304 0.93125 0.91042 1.50056 0.92586 1.19069 0.94024 0.91423 0.97073 1.21618 0.99154 0.92834 1.00824 1.22144 0.94086 0.90838 0.99833 1.60478 1.19972 1.00540 1.49990 1.22569 0.95508 0.90063 1.01606 1.20994 0.91835 0.88316 0.90579 0.86846 1.86670 1.36381 1.95833 1.15239 1.20559 0.98060 0.97885 0.92317 1.20955 0.98727 0.95461 0.97320 1.21290 0.96814 0.95248 0.98531 1.21197 1.00200 1.00278 0.91988 1.21134 0.97254 0.93175 0.99322 1.21692 1.05547 0.97691 0.91673 1.96770 1.94980 1.77312 1.26701 0.93126 0.96605 0.96850 0.93625 0.92465 0.91570 0.95816 0.84349 0.94109 0.90801 0.78045 0.84894 0.85139 0.85058 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.26 5.41 -26.73 -0.14 -2.41 16 11 C 0.06 1.05 5.69 -3.82 -0.02 1.03 16 12 N -0.68 -10.19 6.37 -113.78 -0.72 -10.92 16 13 C 0.03 0.41 5.32 -3.82 -0.02 0.39 16 14 C 0.14 1.58 2.85 -27.88 -0.08 1.51 16 15 H 0.11 1.34 6.89 -51.93 -0.36 0.98 16 16 O -0.54 -6.22 12.86 -35.23 -0.45 -6.67 16 17 C -0.09 -0.84 5.07 -104.60 -0.53 -1.37 16 18 C -0.11 -0.86 9.31 -39.59 -0.37 -1.22 16 19 C -0.10 -0.68 10.05 -39.58 -0.40 -1.08 16 20 C -0.12 -0.80 10.05 -39.59 -0.40 -1.19 16 21 C -0.09 -0.72 9.79 -39.55 -0.39 -1.11 16 22 C -0.09 -0.84 6.22 -39.51 -0.25 -1.09 16 23 Br -0.04 -0.44 31.37 -68.01 -2.13 -2.57 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.04 0.95 8.14 -51.92 -0.42 0.53 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.34 4.94 8.73 -39.29 -0.34 4.60 16 32 H 0.04 0.52 7.62 -51.93 -0.40 0.12 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.37 3.14 7.33 45.56 0.33 3.47 16 35 H 0.13 0.82 6.41 -52.48 -0.34 0.48 16 36 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 37 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -32.22 338.23 -10.51 -42.73 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -4.87 Total: 1.94 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -3.14 Total: -19.93 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.01 Total: -37.63 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.45 Total: -6.67 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.13 Total: -2.57 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.22 -10.51 -42.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819016505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.165 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds