Wall clock time and date at job start Tue Mar 31 2020 15:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00118 * 2 1 4 4 H 1.48500 * 109.46921 * 270.00027 * 3 2 1 5 5 H 1.48500 * 109.47163 * 29.99695 * 3 2 1 6 6 H 1.48494 * 109.47628 * 149.99891 * 3 2 1 7 7 C 1.37882 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00242 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47239 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47473 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.47378 * 179.97438 * 11 10 9 13 13 C 1.46898 * 110.99888 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.47138 * 180.02562 * 13 12 11 15 15 H 1.08993 * 109.46750 * 305.00146 * 14 13 12 16 16 O 1.42895 * 109.46833 * 64.99958 * 14 13 12 17 17 C 1.50691 * 109.47180 * 184.99974 * 14 13 12 18 18 C 1.38266 * 119.99825 * 279.72794 * 17 14 13 19 19 C 1.38219 * 120.02239 * 179.72807 * 18 17 14 20 20 C 1.38240 * 120.01128 * 0.54894 * 19 18 17 21 21 C 1.38315 * 119.98642 * 359.72362 * 20 19 18 22 22 Br 1.89095 * 120.00818 * 180.02562 * 21 20 19 23 23 C 1.38202 * 119.99516 * 100.00323 * 17 14 13 24 24 H 0.97001 * 120.00663 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47585 * 59.99116 * 9 7 2 26 26 H 1.09000 * 109.46916 * 299.99278 * 9 7 2 27 27 H 1.09004 * 109.47108 * 59.99559 * 10 9 7 28 28 H 1.09004 * 109.47368 * 299.99660 * 10 9 7 29 29 H 1.09004 * 109.46862 * 59.99962 * 11 10 9 30 30 H 1.09000 * 109.47250 * 299.99985 * 11 10 9 31 31 H 1.00904 * 110.99860 * 56.05050 * 12 11 10 32 32 H 1.08997 * 109.47334 * 299.99788 * 13 12 11 33 33 H 1.08995 * 109.47296 * 60.00089 * 13 12 11 34 34 H 0.96701 * 114.00463 * 60.00293 * 16 14 13 35 35 H 1.08003 * 119.98850 * 359.97438 * 18 17 14 36 36 H 1.07998 * 119.99491 * 180.26619 * 19 18 17 37 37 H 1.07999 * 120.01125 * 179.70695 * 20 19 18 38 38 H 1.08000 * 120.00222 * 0.02562 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1037 0.0006 13 6 1.7347 -7.3950 0.0005 14 6 2.7596 -8.5310 0.0005 15 1 3.4406 -8.4059 -0.8412 16 8 3.5014 -8.5032 1.2216 17 6 2.0453 -9.8520 -0.1233 18 6 1.4635 -10.4303 0.9897 19 6 0.8033 -11.6393 0.8756 20 6 0.7341 -12.2764 -0.3493 21 6 1.3208 -11.7010 -1.4619 22 35 1.2259 -12.5716 -3.1378 23 6 1.9766 -10.4882 -1.3483 24 1 -0.4851 0.8400 -0.0004 25 1 0.6246 -2.5571 -0.8895 26 1 0.6242 -2.5567 0.8904 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6044 -0.8895 29 1 0.8534 -5.0450 -0.8886 30 1 0.8540 -5.0446 0.8914 31 1 3.0704 -6.0366 0.7815 32 1 1.1102 -7.4696 0.8907 33 1 1.1095 -7.4692 -0.8892 34 1 2.9581 -8.6092 2.0144 35 1 1.5216 -9.9353 1.9479 36 1 0.3453 -12.0885 1.7444 37 1 0.2223 -13.2233 -0.4375 38 1 2.4352 -10.0388 -2.2167 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819016651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:08 Heat of formation + Delta-G solvation = -42.737788 kcal Electronic energy + Delta-G solvation = -18673.739632 eV Core-core repulsion = 15561.358370 eV Total energy + Delta-G solvation = -3112.381262 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.17611 -37.75227 -35.78778 -33.45029 -32.75148 -32.20178 -31.11879 -29.60497 -28.08228 -25.75090 -23.40945 -23.00154 -22.08170 -21.27188 -20.07356 -17.94987 -16.58933 -16.41021 -16.28701 -15.65302 -15.29398 -14.60658 -14.47869 -14.32523 -14.10621 -13.86216 -13.51788 -13.25826 -12.62773 -12.33947 -12.10226 -11.73612 -11.60130 -11.53895 -11.35579 -11.10368 -10.82780 -10.73816 -10.58692 -10.56356 -10.31487 -9.69273 -9.39600 -9.27823 -9.10542 -9.01667 -8.33330 -8.23344 -5.98397 -4.00392 0.64439 0.81415 1.22417 3.12260 3.33577 3.39481 3.43303 3.97027 4.14858 4.36664 4.46757 4.55394 4.57989 4.79599 4.85938 4.99061 5.00029 5.20006 5.37444 5.41862 5.55575 5.61978 5.74206 5.78684 5.85189 5.90363 6.07339 6.30634 6.33315 6.71040 6.74407 7.14213 7.25944 7.31325 7.61147 7.69777 7.84379 8.01990 8.45391 9.06855 9.63568 11.13102 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.001912 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.923257 B =14640.279417 C =15220.983110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.687 5.687 13 C 0.033 3.967 14 C 0.148 3.852 15 H 0.120 0.880 16 O -0.549 6.549 17 C -0.105 4.105 18 C -0.097 4.097 19 C -0.110 4.110 20 C -0.093 4.093 21 C -0.088 4.088 22 Br -0.051 7.051 23 C -0.078 4.078 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.013 0.987 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.344 0.656 32 H 0.031 0.969 33 H 0.081 0.919 34 H 0.371 0.629 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.077 -31.293 -1.083 31.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.319 5.319 13 C -0.097 4.097 14 C 0.089 3.911 15 H 0.137 0.863 16 O -0.354 6.354 17 C -0.107 4.107 18 C -0.115 4.115 19 C -0.129 4.129 20 C -0.113 4.113 21 C -0.167 4.167 22 Br 0.035 6.965 23 C -0.098 4.098 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.163 0.837 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.218 0.782 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.470 -31.405 -2.810 31.565 hybrid contribution -0.550 0.966 1.596 1.945 sum 0.921 -30.439 -1.215 30.477 Atomic orbital electron populations 1.69963 1.06073 1.26561 1.51075 1.25036 0.94856 0.99292 0.95393 0.86587 0.79836 0.83426 0.78118 1.20645 1.21272 1.19866 1.21263 0.93084 0.91037 1.50287 0.92631 1.19066 0.94013 0.91408 0.97088 1.21623 0.99183 0.92850 1.00834 1.22146 0.94083 0.90825 0.99865 1.60487 1.20157 1.00732 1.50509 1.22597 0.95427 0.90184 1.01477 1.20956 0.93010 0.88444 0.88687 0.86259 1.86686 1.37772 1.95683 1.15306 1.20621 0.98955 0.97671 0.93430 1.21053 0.96417 0.95639 0.98430 1.21142 0.99141 0.95300 0.97323 1.21149 0.98499 1.00084 0.91575 1.21801 1.04882 0.97753 0.92274 1.96750 1.97879 1.78338 1.23541 1.21004 0.97684 0.93111 0.98025 0.93044 0.96597 0.96838 0.93584 0.92482 0.91508 0.95806 0.83717 0.95117 0.90084 0.78184 0.85482 0.84898 0.84963 0.84565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 10 C -0.11 -2.23 5.41 -26.74 -0.14 -2.38 16 11 C 0.06 1.02 5.68 -3.82 -0.02 0.99 16 12 N -0.69 -9.82 6.50 -113.78 -0.74 -10.56 16 13 C 0.03 0.37 5.34 -3.82 -0.02 0.35 16 14 C 0.15 1.45 3.45 -27.88 -0.10 1.35 16 15 H 0.12 1.25 8.00 -51.93 -0.42 0.83 16 16 O -0.55 -5.43 12.71 -35.23 -0.45 -5.87 16 17 C -0.10 -0.93 4.97 -104.63 -0.52 -1.45 16 18 C -0.10 -0.72 9.32 -39.58 -0.37 -1.09 16 19 C -0.11 -0.76 10.05 -39.59 -0.40 -1.15 16 20 C -0.09 -0.71 9.79 -39.55 -0.39 -1.09 16 21 C -0.09 -0.77 6.22 -39.51 -0.25 -1.01 16 22 Br -0.05 -0.42 33.70 -68.01 -2.29 -2.72 16 23 C -0.08 -0.71 9.41 -39.56 -0.37 -1.08 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.34 4.79 8.29 -39.29 -0.33 4.47 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.37 2.42 7.50 45.56 0.34 2.76 16 35 H 0.13 0.68 6.78 -52.48 -0.36 0.33 16 36 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 37 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.14 1.14 8.04 -52.49 -0.42 0.71 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -31.60 342.15 -10.68 -42.28 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.95 Total: 1.21 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -3.12 Total: -19.84 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.00 Total: -37.08 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.45 Total: -5.87 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.29 Total: -2.72 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.60 -10.68 -42.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819016651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.460 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds