Wall clock time and date at job start Tue Mar 31 2020 15:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00082 * 2 1 4 4 H 1.48499 * 109.47114 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47061 * 299.99694 * 3 2 1 6 6 H 1.48500 * 109.47124 * 60.00129 * 3 2 1 7 7 C 1.37873 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00388 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46985 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46921 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46991 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00021 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47385 * 180.02562 * 13 12 11 15 15 H 1.08997 * 109.46869 * 304.99927 * 14 13 12 16 16 O 1.42899 * 109.46932 * 64.99910 * 14 13 12 17 17 C 1.50697 * 109.47156 * 184.99884 * 14 13 12 18 18 C 1.38244 * 119.98967 * 99.99939 * 17 14 13 19 19 C 1.38217 * 120.01084 * 180.02562 * 18 17 14 20 20 C 1.38324 * 119.98860 * 0.25885 * 19 18 17 21 21 Br 1.89097 * 120.00911 * 179.72004 * 20 19 18 22 22 C 1.38328 * 119.97976 * 359.46870 * 20 19 18 23 23 C 1.38219 * 119.99018 * 0.55003 * 22 20 19 24 24 H 0.96995 * 119.99669 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47368 * 60.00039 * 9 7 2 26 26 H 1.09007 * 109.47256 * 299.99624 * 9 7 2 27 27 H 1.08998 * 109.47273 * 60.00306 * 10 9 7 28 28 H 1.09000 * 109.46948 * 299.99516 * 10 9 7 29 29 H 1.08998 * 109.46715 * 60.00187 * 11 10 9 30 30 H 1.08993 * 109.47463 * 299.99801 * 11 10 9 31 31 H 1.00890 * 111.00389 * 303.95983 * 12 11 10 32 32 H 1.09004 * 109.47357 * 60.00070 * 13 12 11 33 33 H 1.09006 * 109.47013 * 300.00776 * 13 12 11 34 34 H 0.96700 * 114.00131 * 60.00080 * 16 14 13 35 35 H 1.07999 * 119.99331 * 0.02562 * 18 17 14 36 36 H 1.08002 * 120.00169 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.00499 * 180.25472 * 22 20 19 38 38 H 1.08001 * 119.99446 * 179.72612 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4349 -6.1036 0.0031 13 6 1.7346 -7.3950 0.0031 14 6 2.7594 -8.5310 0.0044 15 1 3.4411 -8.4063 -0.8369 16 8 3.5003 -8.5027 1.2260 17 6 2.0451 -9.8521 -0.1194 18 6 1.9773 -10.4889 -1.3446 19 6 1.3218 -11.7004 -1.4587 20 6 0.7289 -12.2730 -0.3479 21 35 -0.1749 -13.9266 -0.5050 22 6 0.8018 -11.6383 0.8790 23 6 1.4572 -10.4266 0.9921 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 2.8712 -3.6039 0.8923 28 1 2.8726 -3.6047 -0.8877 29 1 0.8540 -5.0454 -0.8878 30 1 0.8532 -5.0442 0.8922 31 1 3.0698 -6.0370 -0.7781 32 1 1.1100 -7.4697 -0.8871 33 1 1.1092 -7.4691 0.8928 34 1 2.9563 -8.6083 2.0185 35 1 2.4366 -10.0396 -2.2127 36 1 1.2686 -12.1975 -2.4160 37 1 0.3426 -12.0870 1.7474 38 1 1.5104 -9.9288 1.9491 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819016676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:36 Heat of formation + Delta-G solvation = -41.271276 kcal Electronic energy + Delta-G solvation = -18612.638804 eV Core-core repulsion = 15500.321136 eV Total energy + Delta-G solvation = -3112.317669 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.15749 -37.66301 -35.81439 -33.47931 -32.89873 -31.55006 -31.36562 -30.15032 -27.75956 -25.58683 -23.49650 -23.10307 -22.10475 -21.32435 -20.07609 -17.92630 -16.61617 -16.24771 -16.15481 -15.59421 -15.35691 -14.63430 -14.49982 -14.36614 -14.07977 -13.89089 -13.55320 -13.25707 -12.64435 -12.29323 -12.04177 -11.81850 -11.69092 -11.52129 -11.37066 -11.00833 -10.85909 -10.70036 -10.58839 -10.54798 -10.24032 -9.70161 -9.47927 -9.34919 -9.07264 -8.96187 -8.34291 -8.21112 -5.99174 -4.01118 0.59736 0.85554 1.20308 3.11690 3.31887 3.39224 3.43999 3.98812 4.23224 4.29715 4.43986 4.47003 4.71290 4.75890 4.83471 4.95586 5.03900 5.22572 5.36744 5.44018 5.50432 5.62566 5.73580 5.74367 5.77700 5.88446 6.10256 6.29581 6.32746 6.70236 6.73281 7.13184 7.25891 7.42323 7.58860 7.69256 7.83562 8.01343 8.44707 9.06392 9.62960 11.12335 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.037837 B = 0.001710 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.837933 B =16366.169347 C =16716.002361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.682 5.682 13 C 0.032 3.968 14 C 0.149 3.851 15 H 0.108 0.892 16 O -0.539 6.539 17 C -0.096 4.096 18 C -0.104 4.104 19 C -0.089 4.089 20 C -0.092 4.092 21 Br -0.054 7.054 22 C -0.087 4.087 23 C -0.105 4.105 24 H 0.259 0.741 25 H 0.013 0.987 26 H 0.016 0.984 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.338 0.662 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.372 0.628 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.363 -31.967 -1.255 31.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.069 4.069 12 N -0.313 5.313 13 C -0.099 4.099 14 C 0.089 3.911 15 H 0.126 0.874 16 O -0.344 6.344 17 C -0.097 4.097 18 C -0.123 4.123 19 C -0.108 4.108 20 C -0.172 4.172 21 Br 0.032 6.968 22 C -0.107 4.107 23 C -0.124 4.124 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.156 0.844 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.220 0.780 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.451 -32.376 -1.035 32.395 hybrid contribution -0.382 1.147 -0.594 1.347 sum 0.069 -31.228 -1.629 31.271 Atomic orbital electron populations 1.69978 1.06064 1.26445 1.51159 1.25043 0.94867 0.99315 0.95410 0.86531 0.80158 0.83758 0.77534 1.19699 1.21074 1.21015 1.21300 0.93126 0.91025 1.50150 0.92570 1.19075 0.94023 0.91433 0.97090 1.21623 0.99173 0.92841 1.00840 1.22150 0.94065 0.90842 0.99857 1.60482 1.20058 1.00717 1.50023 1.22633 0.95566 0.90147 1.01504 1.20855 0.92604 0.88492 0.89101 0.87407 1.86667 1.37120 1.95708 1.14911 1.20812 0.97539 0.97445 0.93930 1.21053 0.99135 0.94612 0.97462 1.21122 0.96461 0.95539 0.97713 1.21822 1.03797 0.94677 0.96878 1.96737 1.76176 1.25334 1.98592 1.21098 0.98405 0.95018 0.96161 1.20940 0.97344 0.95253 0.98821 0.93102 0.96837 0.96594 0.92442 0.93616 0.95817 0.91517 0.84395 0.94496 0.90626 0.77985 0.84821 0.84841 0.84814 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -2.21 5.41 -26.73 -0.14 -2.36 16 11 C 0.06 1.01 5.69 -3.82 -0.02 0.98 16 12 N -0.68 -9.56 6.45 -113.77 -0.73 -10.29 16 13 C 0.03 0.35 5.30 -3.82 -0.02 0.33 16 14 C 0.15 1.41 3.38 -27.88 -0.09 1.31 16 15 H 0.11 0.99 8.00 -51.93 -0.42 0.57 16 16 O -0.54 -5.76 13.14 -35.23 -0.46 -6.22 16 17 C -0.10 -0.81 4.97 -104.62 -0.52 -1.33 16 18 C -0.10 -0.82 9.67 -39.59 -0.38 -1.20 16 19 C -0.09 -0.70 9.79 -39.56 -0.39 -1.08 16 20 C -0.09 -0.77 6.22 -39.52 -0.25 -1.02 16 21 Br -0.05 -0.42 33.70 -68.01 -2.29 -2.71 16 22 C -0.09 -0.68 9.79 -39.56 -0.39 -1.07 16 23 C -0.10 -0.81 9.32 -39.59 -0.37 -1.18 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.34 4.47 8.73 -39.30 -0.34 4.12 16 32 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.37 2.86 7.50 45.56 0.34 3.20 16 35 H 0.13 0.82 8.04 -52.49 -0.42 0.40 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.13 0.77 6.79 -52.49 -0.36 0.41 16 LS Contribution 342.88 15.07 5.17 5.17 Total: -1.00 -31.84 342.88 -10.69 -42.53 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.96 Total: 1.03 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -3.12 Total: -19.88 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.00 Total: -36.74 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.46 Total: -6.22 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.29 Total: -2.71 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.84 -10.69 -42.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819016676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.258 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds