Wall clock time and date at job start Tue Mar 31 2020 15:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00082 * 2 1 4 4 H 1.48499 * 109.47114 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47061 * 299.99694 * 3 2 1 6 6 H 1.48500 * 109.47124 * 60.00129 * 3 2 1 7 7 C 1.37873 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00388 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46985 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46921 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.46991 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00021 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47385 * 180.02562 * 13 12 11 15 15 H 1.08997 * 109.46869 * 304.99927 * 14 13 12 16 16 O 1.42899 * 109.46932 * 64.99910 * 14 13 12 17 17 C 1.50697 * 109.47156 * 184.99884 * 14 13 12 18 18 C 1.38244 * 119.98967 * 99.99939 * 17 14 13 19 19 C 1.38217 * 120.01084 * 180.02562 * 18 17 14 20 20 C 1.38324 * 119.98860 * 0.25885 * 19 18 17 21 21 Br 1.89097 * 120.00911 * 179.72004 * 20 19 18 22 22 C 1.38328 * 119.97976 * 359.46870 * 20 19 18 23 23 C 1.38219 * 119.99018 * 0.55003 * 22 20 19 24 24 H 0.96995 * 119.99669 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47368 * 60.00039 * 9 7 2 26 26 H 1.09007 * 109.47256 * 299.99624 * 9 7 2 27 27 H 1.08998 * 109.47273 * 60.00306 * 10 9 7 28 28 H 1.09000 * 109.46948 * 299.99516 * 10 9 7 29 29 H 1.08998 * 109.46715 * 60.00187 * 11 10 9 30 30 H 1.08993 * 109.47463 * 299.99801 * 11 10 9 31 31 H 1.00890 * 111.00389 * 303.95983 * 12 11 10 32 32 H 1.09004 * 109.47357 * 60.00070 * 13 12 11 33 33 H 1.09006 * 109.47013 * 300.00776 * 13 12 11 34 34 H 0.96700 * 114.00131 * 60.00080 * 16 14 13 35 35 H 1.07999 * 119.99331 * 0.02562 * 18 17 14 36 36 H 1.08002 * 120.00169 * 179.97438 * 19 18 17 37 37 H 1.07997 * 120.00499 * 180.25472 * 22 20 19 38 38 H 1.08001 * 119.99446 * 179.72612 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4349 -6.1036 0.0031 13 6 1.7346 -7.3950 0.0031 14 6 2.7594 -8.5310 0.0044 15 1 3.4411 -8.4063 -0.8369 16 8 3.5003 -8.5027 1.2260 17 6 2.0451 -9.8521 -0.1194 18 6 1.9773 -10.4889 -1.3446 19 6 1.3218 -11.7004 -1.4587 20 6 0.7289 -12.2730 -0.3479 21 35 -0.1749 -13.9266 -0.5050 22 6 0.8018 -11.6383 0.8790 23 6 1.4572 -10.4266 0.9921 24 1 -0.4849 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 2.8712 -3.6039 0.8923 28 1 2.8726 -3.6047 -0.8877 29 1 0.8540 -5.0454 -0.8878 30 1 0.8532 -5.0442 0.8922 31 1 3.0698 -6.0370 -0.7781 32 1 1.1100 -7.4697 -0.8871 33 1 1.1092 -7.4691 0.8928 34 1 2.9563 -8.6083 2.0185 35 1 2.4366 -10.0396 -2.2127 36 1 1.2686 -12.1975 -2.4160 37 1 0.3426 -12.0870 1.7474 38 1 1.5104 -9.9288 1.9491 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819016676.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:35 Heat of formation + Delta-G solvation = -62.169665 kcal Electronic energy + Delta-G solvation = -18613.545027 eV Core-core repulsion = 15500.321136 eV Total energy + Delta-G solvation = -3113.223891 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.79165 -38.51488 -37.08124 -35.32321 -33.66034 -33.01858 -32.07901 -30.99149 -29.04299 -27.07562 -24.59114 -23.94225 -23.34025 -22.20806 -21.64129 -18.60715 -18.49445 -17.38155 -16.86542 -16.54571 -16.45819 -16.25213 -15.45757 -15.33641 -15.20643 -14.63067 -14.46117 -14.29429 -14.17377 -13.65010 -13.41857 -13.08161 -12.85016 -12.66197 -12.46134 -12.38269 -12.25130 -12.15415 -11.65584 -11.54024 -11.44366 -11.29733 -11.22836 -10.88003 -10.55971 -10.05074 -9.62689 -9.34968 -8.20459 -6.31281 -0.01598 0.28444 0.60371 1.40278 1.40578 1.54318 2.40983 2.50889 3.08495 3.12668 3.54513 3.72254 3.84062 3.90193 3.99928 4.14776 4.26958 4.31421 4.35499 4.44356 4.63906 4.67226 4.72794 4.84328 4.96222 4.99423 5.09177 5.15276 5.17097 5.24766 5.47860 5.52544 5.75127 5.75909 5.86179 6.01605 6.27117 6.45054 6.82535 6.86027 7.38019 8.91624 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.037837 B = 0.001710 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.837933 B =16366.169347 C =16716.002361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.024 3.976 10 C -0.093 4.093 11 C 0.073 3.927 12 N -0.685 5.685 13 C 0.034 3.966 14 C 0.160 3.840 15 H 0.112 0.888 16 O -0.556 6.556 17 C -0.105 4.105 18 C -0.108 4.108 19 C -0.096 4.096 20 C -0.103 4.103 21 Br -0.053 7.053 22 C -0.095 4.095 23 C -0.108 4.108 24 H 0.264 0.736 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.023 0.977 30 H 0.061 0.939 31 H 0.345 0.655 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.384 0.616 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.332 -32.395 -1.370 32.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.013 4.013 10 C -0.131 4.131 11 C -0.056 4.056 12 N -0.316 5.316 13 C -0.095 4.095 14 C 0.100 3.900 15 H 0.129 0.871 16 O -0.363 6.363 17 C -0.106 4.106 18 C -0.127 4.127 19 C -0.116 4.116 20 C -0.183 4.183 21 Br 0.032 6.968 22 C -0.114 4.114 23 C -0.127 4.127 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.163 0.837 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.233 0.767 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.427 -32.829 -1.147 32.880 hybrid contribution -0.717 1.220 -0.549 1.517 sum 0.710 -31.609 -1.696 31.662 Atomic orbital electron populations 1.70102 1.07777 1.27704 1.51852 1.26011 0.95825 1.03453 0.94785 0.85379 0.79072 0.78676 0.77801 1.18602 1.20309 1.20345 1.21740 0.93568 0.92429 1.50263 0.92240 1.18983 0.94446 0.93150 0.94756 1.21374 0.97998 0.92948 1.00760 1.21827 0.93912 0.90223 0.99636 1.60391 1.19641 1.01049 1.50508 1.22679 0.95983 0.89062 1.01811 1.20717 0.92074 0.88261 0.88899 0.87076 1.86636 1.38145 1.95749 1.15809 1.20763 0.98110 0.97187 0.94525 1.21279 0.98929 0.94605 0.97873 1.21321 0.96353 0.95671 0.98217 1.22011 1.04005 0.94888 0.97362 1.96733 1.76170 1.25290 1.98601 1.21301 0.98488 0.95140 0.96512 1.21177 0.96823 0.95257 0.99456 0.92773 0.99044 0.99037 0.92964 0.93064 0.95884 0.92021 0.83719 0.94034 0.90431 0.76658 0.83289 0.83629 0.83633 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.54 -31.33 9.11 25.60 0.23 -31.09 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.09 -3.84 5.41 30.60 0.17 -3.68 16 11 C 0.07 2.44 5.69 86.31 0.49 2.93 16 12 N -0.68 -18.22 6.45 -513.87 -3.31 -21.54 16 13 C 0.03 0.70 5.30 86.30 0.46 1.15 16 14 C 0.16 2.74 3.38 29.85 0.10 2.84 16 15 H 0.11 1.82 8.00 -2.39 -0.02 1.80 16 16 O -0.56 -10.93 13.14 -148.98 -1.96 -12.88 16 17 C -0.10 -1.60 4.97 -19.86 -0.10 -1.69 16 18 C -0.11 -1.52 9.67 22.27 0.22 -1.31 16 19 C -0.10 -1.37 9.79 22.29 0.22 -1.15 16 20 C -0.10 -1.59 6.22 22.31 0.14 -1.45 16 21 Br -0.05 -0.78 33.70 -20.37 -0.69 -1.47 16 22 C -0.09 -1.35 9.79 22.29 0.22 -1.13 16 23 C -0.11 -1.50 9.32 22.27 0.21 -1.30 16 24 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 25 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 26 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 27 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.34 8.52 8.73 -89.70 -0.78 7.74 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.38 5.23 7.50 -74.06 -0.56 4.67 16 35 H 0.15 1.54 8.04 -2.91 -0.02 1.52 16 36 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 37 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 38 H 0.15 1.44 6.79 -2.91 -0.02 1.42 16 Total: -1.00 -67.46 342.88 -0.97 -68.43 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -0.28 Total: 11.95 kcal Atomic # 6 Polarization: -37.13 SS G_CDS: 2.96 Total: -34.17 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -3.03 Total: -78.55 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -1.96 Total: -12.88 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -0.69 Total: -1.47 kcal Total: -67.46 -0.97 -68.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819016676.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.260 kcal (2) G-P(sol) polarization free energy of solvation -67.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds