Wall clock time and date at job start Tue Mar 31 2020 15:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 115.54710 * 2 1 4 4 C 1.50693 * 109.47332 * 280.22904 * 3 2 1 5 5 O 1.21287 * 120.00182 * 5.27638 * 4 3 2 6 6 N 1.34775 * 120.00347 * 185.27573 * 4 3 2 7 7 C 1.39237 * 120.00462 * 175.79749 * 6 4 3 8 8 C 1.39482 * 119.83547 * 215.05131 * 7 6 4 9 9 C 1.36378 * 120.17030 * 179.76155 * 8 7 6 10 10 C 1.40875 * 119.82499 * 0.50728 * 9 8 7 11 11 C 1.41150 * 120.15991 * 179.72162 * 10 9 8 12 12 H 1.08003 * 119.99775 * 214.21081 * 11 10 9 13 13 C 1.39904 * 120.00565 * 34.21246 * 11 10 9 14 14 N 1.30879 * 119.99571 * 5.59173 * 13 11 10 15 15 Si 1.86796 * 120.00351 * 185.59371 * 13 11 10 16 16 H 1.48500 * 109.47187 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46972 * 119.99988 * 15 13 11 18 18 H 1.48496 * 109.46824 * 239.99902 * 15 13 11 19 19 C 1.40868 * 119.67268 * 359.74339 * 10 9 8 20 20 C 1.36380 * 119.82852 * 0.02562 * 19 10 9 21 21 C 1.53074 * 117.51464 * 145.72511 * 2 1 3 22 22 C 1.52996 * 117.49708 * 214.33342 * 2 1 3 23 23 Cl 1.80298 * 117.50235 * 359.97438 * 22 2 1 24 24 Cl 1.80302 * 117.49837 * 144.99668 * 22 2 1 25 25 H 1.08997 * 109.47053 * 200.67769 * 1 2 3 26 26 H 1.08998 * 109.46803 * 320.67316 * 1 2 3 27 27 H 1.08997 * 109.46747 * 80.67311 * 1 2 3 28 28 H 1.08994 * 109.46982 * 40.23382 * 3 2 1 29 29 H 1.09003 * 109.46869 * 160.23071 * 3 2 1 30 30 H 0.97006 * 119.99979 * 355.80246 * 6 4 3 31 31 H 1.08002 * 119.91549 * 0.02562 * 8 7 6 32 32 H 1.07994 * 120.08506 * 180.25193 * 9 8 7 33 33 H 0.96996 * 119.99618 * 180.02562 * 14 13 11 34 34 H 1.07998 * 120.08607 * 179.97438 * 19 10 9 35 35 H 1.08006 * 119.91130 * 179.97438 * 20 19 10 36 36 H 1.08996 * 117.51260 * 359.97438 * 21 2 1 37 37 H 1.09001 * 117.49057 * 214.96251 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.1789 1.9425 -1.3981 5 8 1.6076 1.3467 -2.2868 6 7 2.8039 3.1072 -1.6612 7 6 2.8690 3.5828 -2.9683 8 6 4.0026 4.2709 -3.4006 9 6 4.0757 4.7354 -4.6808 10 6 2.9980 4.5279 -5.5640 11 6 3.0637 5.0108 -6.8887 12 1 2.1690 5.3644 -7.3796 13 6 4.2877 5.0313 -7.5660 14 7 5.3501 4.5029 -7.0136 15 14 4.4057 5.8127 -9.2586 16 1 3.0735 6.3337 -9.6572 17 1 5.3836 6.9296 -9.2210 18 1 4.8537 4.7954 -10.2432 19 6 1.8544 3.8366 -5.1184 20 6 1.7978 3.3739 -3.8368 21 6 2.2372 -1.1219 0.7646 22 6 2.2364 -1.1207 -0.7654 23 17 1.2023 -2.3407 -1.5978 24 17 3.7829 -0.7136 -1.5984 25 1 -0.3633 -0.9614 0.3629 26 1 -0.3633 0.7949 0.6513 27 1 -0.3633 0.1665 -1.0141 28 1 1.6388 2.0465 0.6637 29 1 3.2191 1.2911 0.3476 30 1 3.2084 3.6143 -0.9399 31 1 4.8264 4.4326 -2.7211 32 1 4.9557 5.2645 -5.0153 33 1 6.1988 4.5175 -7.4830 34 1 1.0241 3.6741 -5.7898 35 1 0.9215 2.8440 -3.4936 36 1 1.6125 -1.8596 1.2679 37 1 3.1725 -0.8760 1.2676 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822226691.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:02 Heat of formation + Delta-G solvation = -3.916898 kcal Electronic energy + Delta-G solvation = -22775.691465 eV Core-core repulsion = 19184.297360 eV Total energy + Delta-G solvation = -3591.394105 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.00685 -38.43066 -37.02314 -35.92421 -35.67224 -34.32970 -32.89129 -30.17240 -29.52512 -28.82568 -27.98016 -24.77525 -22.47561 -21.80761 -20.94050 -19.90666 -19.11686 -17.31855 -16.89456 -16.36858 -16.18869 -15.46148 -15.09788 -14.65110 -13.99513 -13.84773 -13.37591 -13.24637 -13.02632 -12.68008 -12.47191 -12.24387 -12.17121 -12.02688 -11.81496 -11.59036 -11.50581 -11.33702 -11.12196 -11.06388 -10.90592 -10.74423 -10.70830 -10.31813 -9.91799 -9.64015 -9.45771 -9.35464 -9.06074 -8.81128 -7.51432 -6.84040 -6.62530 -4.29152 1.28612 2.21345 2.60888 2.96542 3.05197 3.10878 3.12366 3.17180 3.39449 3.75829 3.98824 4.00359 4.21275 4.53084 4.70631 4.74212 5.17536 5.22996 5.30001 5.37300 5.54312 5.63620 5.68060 5.74100 6.12293 6.21160 6.48106 6.79177 6.95900 7.10107 7.23930 7.32542 7.64620 7.75570 7.91184 8.08869 8.30591 8.33766 8.64706 8.81408 8.95021 9.03620 10.32218 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.021445 B = 0.003065 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.340436 B = 9132.350122 C = 9401.096337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.068 4.068 3 C -0.113 4.113 4 C 0.501 3.499 5 O -0.512 6.512 6 N -0.654 5.654 7 C 0.008 3.992 8 C -0.120 4.120 9 C -0.140 4.140 10 C 0.105 3.895 11 C -0.465 4.465 12 H 0.076 0.924 13 C 0.072 3.928 14 N -0.809 5.809 15 Si 0.911 3.089 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.275 1.275 19 C -0.207 4.207 20 C -0.082 4.082 21 C -0.147 4.147 22 C 0.022 3.978 23 Cl -0.096 7.096 24 Cl -0.083 7.083 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.393 0.607 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.277 0.723 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 -7.798 17.363 19.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.070 4.070 3 C -0.153 4.153 4 C 0.286 3.714 5 O -0.387 6.387 6 N -0.297 5.297 7 C -0.084 4.084 8 C -0.141 4.141 9 C -0.160 4.160 10 C 0.103 3.897 11 C -0.495 4.495 12 H 0.094 0.906 13 C -0.144 4.144 14 N -0.436 5.436 15 Si 0.736 3.264 16 H -0.186 1.186 17 H -0.199 1.199 18 H -0.201 1.201 19 C -0.227 4.227 20 C -0.102 4.102 21 C -0.185 4.185 22 C -0.030 4.030 23 Cl -0.068 7.068 24 Cl -0.056 7.056 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.123 0.877 29 H 0.114 0.886 30 H 0.226 0.774 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.138 0.862 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.028 -8.369 16.530 18.961 hybrid contribution 0.682 0.347 -0.616 0.982 sum -3.347 -8.022 15.914 18.133 Atomic orbital electron populations 1.21442 0.89751 1.02229 1.04089 1.21929 0.96636 0.89914 0.98517 1.21367 1.02538 0.94509 0.96866 1.20193 0.80284 0.80914 0.89964 1.90720 1.42449 1.58907 1.46671 1.42948 1.56463 1.21687 1.08620 1.17191 0.96814 1.09785 0.84625 1.20258 0.94759 1.02276 0.96779 1.20910 1.00747 1.03244 0.91067 1.17679 0.90768 0.88438 0.92843 1.19528 0.94501 1.37595 0.97913 0.90564 1.25856 0.95164 0.93368 0.99979 1.69805 1.00822 1.34799 1.38225 0.86213 0.79260 0.79293 0.81611 1.18572 1.19946 1.20070 1.20786 1.00785 1.05394 0.95730 1.20380 0.96437 0.99359 0.93976 1.24268 1.03655 1.00569 0.89993 1.26639 0.88145 0.97711 0.90459 1.98729 1.68403 1.58078 1.81630 1.98774 1.32165 1.93352 1.81309 0.91849 0.91351 0.89986 0.87707 0.88641 0.77375 0.89265 0.86237 0.91198 0.88713 0.87455 0.86226 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 8.75 37.16 0.33 -0.84 16 2 C -0.07 -0.72 1.59 -154.47 -0.25 -0.96 16 3 C -0.11 -1.18 5.06 -27.88 -0.14 -1.33 16 4 C 0.50 7.96 6.44 -10.99 -0.07 7.89 16 5 O -0.51 -10.11 12.03 5.55 0.07 -10.05 16 6 N -0.65 -10.91 5.30 -9.74 -0.05 -10.96 16 7 C 0.01 0.18 6.30 -83.57 -0.53 -0.35 16 8 C -0.12 -2.74 9.90 -39.79 -0.39 -3.13 16 9 C -0.14 -3.61 8.57 -39.25 -0.34 -3.94 16 10 C 0.11 2.84 5.50 -106.80 -0.59 2.26 16 11 C -0.46 -12.56 9.03 -37.85 -0.34 -12.90 16 12 H 0.08 1.99 7.85 -52.48 -0.41 1.58 16 13 C 0.07 1.84 5.31 -17.33 -0.09 1.75 16 14 N -0.81 -21.49 10.95 55.55 0.61 -20.88 16 15 Si 0.91 19.22 29.56 -169.99 -5.03 14.19 16 16 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 17 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 18 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 19 C -0.21 -5.28 9.74 -39.26 -0.38 -5.67 16 20 C -0.08 -1.94 8.61 -39.79 -0.34 -2.28 16 21 C -0.15 -1.22 9.51 -26.69 -0.25 -1.47 16 22 C 0.02 0.27 3.03 -26.73 -0.08 0.19 16 23 Cl -0.10 -1.26 28.23 -51.86 -1.46 -2.73 16 24 Cl -0.08 -1.26 26.69 -51.86 -1.38 -2.65 16 25 H 0.06 0.54 7.82 -51.93 -0.41 0.13 16 26 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 27 H 0.08 1.04 7.81 -51.93 -0.41 0.63 16 28 H 0.10 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.10 0.86 7.80 -51.93 -0.40 0.46 16 30 H 0.39 5.06 8.82 -40.82 -0.36 4.70 16 31 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 32 H 0.12 3.18 6.45 -52.49 -0.34 2.84 16 33 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 34 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 35 H 0.11 2.50 6.23 -52.48 -0.33 2.17 16 36 H 0.12 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.12 0.79 8.09 -51.93 -0.42 0.37 16 LS Contribution 340.92 15.07 5.14 5.14 Total: -1.00 -31.07 340.92 -9.89 -40.97 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -4.31 Total: 7.75 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -3.47 Total: -20.79 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.56 Total: -31.84 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.05 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Atomic # 17 Polarization: -2.53 SS G_CDS: -2.85 Total: -5.37 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.07 -9.89 -40.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822226691.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.051 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds