Wall clock time and date at job start Tue Mar 31 2020 15:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 115.54710 * 2 1 4 4 C 1.50693 * 109.47332 * 280.22904 * 3 2 1 5 5 O 1.21287 * 120.00182 * 5.27638 * 4 3 2 6 6 N 1.34775 * 120.00347 * 185.27573 * 4 3 2 7 7 C 1.39237 * 120.00462 * 175.79749 * 6 4 3 8 8 C 1.39482 * 119.83547 * 215.05131 * 7 6 4 9 9 C 1.36378 * 120.17030 * 179.76155 * 8 7 6 10 10 C 1.40875 * 119.82499 * 0.50728 * 9 8 7 11 11 C 1.41150 * 120.15991 * 179.72162 * 10 9 8 12 12 H 1.08003 * 119.99775 * 214.21081 * 11 10 9 13 13 C 1.39904 * 120.00565 * 34.21246 * 11 10 9 14 14 N 1.30879 * 119.99571 * 5.59173 * 13 11 10 15 15 Si 1.86796 * 120.00351 * 185.59371 * 13 11 10 16 16 H 1.48500 * 109.47187 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46972 * 119.99988 * 15 13 11 18 18 H 1.48496 * 109.46824 * 239.99902 * 15 13 11 19 19 C 1.40868 * 119.67268 * 359.74339 * 10 9 8 20 20 C 1.36380 * 119.82852 * 0.02562 * 19 10 9 21 21 C 1.53074 * 117.51464 * 145.72511 * 2 1 3 22 22 C 1.52996 * 117.49708 * 214.33342 * 2 1 3 23 23 Cl 1.80298 * 117.50235 * 359.97438 * 22 2 1 24 24 Cl 1.80302 * 117.49837 * 144.99668 * 22 2 1 25 25 H 1.08997 * 109.47053 * 200.67769 * 1 2 3 26 26 H 1.08998 * 109.46803 * 320.67316 * 1 2 3 27 27 H 1.08997 * 109.46747 * 80.67311 * 1 2 3 28 28 H 1.08994 * 109.46982 * 40.23382 * 3 2 1 29 29 H 1.09003 * 109.46869 * 160.23071 * 3 2 1 30 30 H 0.97006 * 119.99979 * 355.80246 * 6 4 3 31 31 H 1.08002 * 119.91549 * 0.02562 * 8 7 6 32 32 H 1.07994 * 120.08506 * 180.25193 * 9 8 7 33 33 H 0.96996 * 119.99618 * 180.02562 * 14 13 11 34 34 H 1.07998 * 120.08607 * 179.97438 * 19 10 9 35 35 H 1.08006 * 119.91130 * 179.97438 * 20 19 10 36 36 H 1.08996 * 117.51260 * 359.97438 * 21 2 1 37 37 H 1.09001 * 117.49057 * 214.96251 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.1789 1.9425 -1.3981 5 8 1.6076 1.3467 -2.2868 6 7 2.8039 3.1072 -1.6612 7 6 2.8690 3.5828 -2.9683 8 6 4.0026 4.2709 -3.4006 9 6 4.0757 4.7354 -4.6808 10 6 2.9980 4.5279 -5.5640 11 6 3.0637 5.0108 -6.8887 12 1 2.1690 5.3644 -7.3796 13 6 4.2877 5.0313 -7.5660 14 7 5.3501 4.5029 -7.0136 15 14 4.4057 5.8127 -9.2586 16 1 3.0735 6.3337 -9.6572 17 1 5.3836 6.9296 -9.2210 18 1 4.8537 4.7954 -10.2432 19 6 1.8544 3.8366 -5.1184 20 6 1.7978 3.3739 -3.8368 21 6 2.2372 -1.1219 0.7646 22 6 2.2364 -1.1207 -0.7654 23 17 1.2023 -2.3407 -1.5978 24 17 3.7829 -0.7136 -1.5984 25 1 -0.3633 -0.9614 0.3629 26 1 -0.3633 0.7949 0.6513 27 1 -0.3633 0.1665 -1.0141 28 1 1.6388 2.0465 0.6637 29 1 3.2191 1.2911 0.3476 30 1 3.2084 3.6143 -0.9399 31 1 4.8264 4.4326 -2.7211 32 1 4.9557 5.2645 -5.0153 33 1 6.1988 4.5175 -7.4830 34 1 1.0241 3.6741 -5.7898 35 1 0.9215 2.8440 -3.4936 36 1 1.6125 -1.8596 1.2679 37 1 3.1725 -0.8760 1.2676 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822226691.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:01 Heat of formation + Delta-G solvation = -21.205927 kcal Electronic energy + Delta-G solvation = -22776.441174 eV Core-core repulsion = 19184.297360 eV Total energy + Delta-G solvation = -3592.143814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.28537 -39.67218 -38.57711 -36.90811 -36.65983 -36.00084 -34.64805 -31.55551 -31.34063 -30.14584 -29.03096 -26.58051 -23.50038 -23.25172 -22.72126 -21.38564 -20.13492 -19.24291 -18.26665 -17.68940 -17.24424 -17.02150 -16.44585 -15.88837 -15.59881 -15.15371 -14.85478 -14.53403 -14.18620 -14.10955 -13.95227 -13.62901 -13.38568 -13.25757 -13.02111 -12.99119 -12.82268 -12.71040 -12.51347 -12.46515 -12.37158 -12.06401 -11.75177 -11.72366 -11.37161 -11.22699 -11.16276 -10.67768 -10.52466 -10.38111 -9.44072 -8.70168 -8.52361 -6.30114 0.38292 0.84944 1.15482 1.27883 1.38308 1.44850 1.53269 1.92545 2.12726 2.24010 2.61391 2.82330 3.13753 3.40850 3.67672 3.71452 3.97846 4.15345 4.41087 4.56097 4.62533 4.63733 4.67251 4.82879 4.91018 4.93619 4.99525 5.16143 5.19028 5.34602 5.36314 5.48153 5.70245 5.92744 6.05983 6.15066 6.42305 6.68387 6.84582 6.97212 7.02433 7.55385 8.43162 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.021445 B = 0.003065 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.340436 B = 9132.350122 C = 9401.096337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.074 4.074 3 C -0.103 4.103 4 C 0.498 3.502 5 O -0.552 6.552 6 N -0.651 5.651 7 C 0.033 3.967 8 C -0.122 4.122 9 C -0.156 4.156 10 C 0.071 3.929 11 C -0.504 4.504 12 H 0.071 0.929 13 C 0.030 3.970 14 N -0.843 5.843 15 Si 0.985 3.015 16 H -0.260 1.260 17 H -0.262 1.262 18 H -0.270 1.270 19 C -0.224 4.224 20 C -0.093 4.093 21 C -0.105 4.105 22 C -0.009 4.009 23 Cl -0.115 7.115 24 Cl -0.118 7.118 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.047 0.953 28 H 0.144 0.856 29 H 0.119 0.881 30 H 0.416 0.584 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.284 0.716 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.143 0.857 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.645 -7.996 20.359 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.076 4.076 3 C -0.143 4.143 4 C 0.286 3.714 5 O -0.429 6.429 6 N -0.296 5.296 7 C -0.061 4.061 8 C -0.142 4.142 9 C -0.176 4.176 10 C 0.069 3.931 11 C -0.535 4.535 12 H 0.089 0.911 13 C -0.182 4.182 14 N -0.471 5.471 15 Si 0.806 3.194 16 H -0.184 1.184 17 H -0.186 1.186 18 H -0.195 1.195 19 C -0.244 4.244 20 C -0.113 4.113 21 C -0.142 4.142 22 C -0.061 4.061 23 Cl -0.088 7.088 24 Cl -0.091 7.091 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.162 0.838 29 H 0.137 0.863 30 H 0.253 0.747 31 H 0.140 0.860 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.161 0.839 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.767 -8.569 19.588 21.710 hybrid contribution 0.508 0.304 -1.340 1.465 sum -3.260 -8.265 18.248 20.296 Atomic orbital electron populations 1.21437 0.89492 1.03877 1.02530 1.22108 0.96959 0.90007 0.98514 1.21447 1.04764 0.94842 0.93226 1.21208 0.78340 0.79888 0.91932 1.90723 1.43796 1.59747 1.48652 1.42938 1.57028 1.22587 1.07086 1.17230 0.95204 1.07088 0.86549 1.20524 0.95936 1.01525 0.96197 1.20888 1.00117 1.04230 0.92396 1.17967 0.91803 0.89749 0.93570 1.19739 0.95302 1.39731 0.98684 0.91120 1.26692 0.94292 0.93334 1.03868 1.69866 1.01440 1.35788 1.40045 0.85112 0.79380 0.78511 0.76368 1.18368 1.18622 1.19522 1.20912 1.00634 1.06040 0.96809 1.20498 0.97418 0.99527 0.93827 1.24474 1.04301 0.98711 0.86749 1.27133 0.87295 0.99327 0.92295 1.98722 1.68825 1.58807 1.82396 1.98764 1.34379 1.93625 1.82363 0.90582 0.89088 0.93435 0.83797 0.86287 0.74721 0.85976 0.87698 0.90552 0.89111 0.87178 0.83890 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 8.75 71.98 0.63 -1.34 16 2 C -0.07 -1.30 1.59 -52.15 -0.08 -1.38 16 3 C -0.10 -1.72 5.06 29.85 0.15 -1.57 16 4 C 0.50 14.63 6.44 87.66 0.56 15.19 16 5 O -0.55 -21.39 12.03 -3.05 -0.04 -21.42 16 6 N -0.65 -20.04 5.30 -303.12 -1.61 -21.65 16 7 C 0.03 1.41 6.30 38.56 0.24 1.66 16 8 C -0.12 -5.47 9.90 22.14 0.22 -5.25 16 9 C -0.16 -8.29 8.57 22.48 0.19 -8.09 16 10 C 0.07 4.03 5.50 -21.28 -0.12 3.91 16 11 C -0.50 -28.51 9.03 23.39 0.21 -28.30 16 12 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 13 C 0.03 1.58 5.31 85.24 0.45 2.04 16 14 N -0.84 -46.07 10.95 21.82 0.24 -45.83 16 15 Si 0.99 40.23 29.56 68.60 2.03 42.26 16 16 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 17 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 18 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 19 C -0.22 -11.94 9.74 22.48 0.22 -11.72 16 20 C -0.09 -4.47 8.61 22.14 0.19 -4.27 16 21 C -0.11 -1.27 9.51 30.62 0.29 -0.97 16 22 C -0.01 -0.21 3.03 30.59 0.09 -0.12 16 23 Cl -0.11 -2.95 28.23 -2.72 -0.08 -3.03 16 24 Cl -0.12 -3.44 26.69 -2.72 -0.07 -3.51 16 25 H 0.08 1.06 7.82 -2.39 -0.02 1.04 16 26 H 0.09 1.10 8.06 -2.39 -0.02 1.08 16 27 H 0.05 1.16 7.81 -2.39 -0.02 1.14 16 28 H 0.14 1.37 8.07 -2.39 -0.02 1.35 16 29 H 0.12 1.51 7.80 -2.39 -0.02 1.49 16 30 H 0.42 9.12 8.82 -92.70 -0.82 8.31 16 31 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 32 H 0.11 5.80 6.45 -2.91 -0.02 5.78 16 33 H 0.28 14.07 8.30 -92.71 -0.77 13.30 16 34 H 0.09 4.72 8.06 -2.91 -0.02 4.70 16 35 H 0.11 5.21 6.23 -2.91 -0.02 5.19 16 36 H 0.14 1.13 8.08 -2.39 -0.02 1.11 16 37 H 0.14 1.10 8.09 -2.39 -0.02 1.08 16 Total: -1.00 -72.47 340.92 4.03 -68.45 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.29 Total: 24.94 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 3.26 Total: -40.22 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: -1.37 Total: -67.47 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.04 Total: -21.42 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Atomic # 17 Polarization: -6.39 SS G_CDS: -0.15 Total: -6.54 kcal Total: -72.47 4.03 -68.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822226691.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.241 kcal (2) G-P(sol) polarization free energy of solvation -72.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds