Wall clock time and date at job start Tue Mar 31 2020 14:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31596 * 122.23062 * 2 1 4 4 C 1.29939 * 117.13751 * 180.02562 * 3 2 1 5 5 N 1.38896 * 125.36226 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99610 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00648 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99551 * 180.02562 * 6 5 4 9 9 H 1.08999 * 110.89310 * 307.44668 * 8 6 5 10 10 C 1.54770 * 111.01119 * 71.39127 * 8 6 5 11 11 C 1.51679 * 102.47540 * 142.00940 * 10 8 6 12 12 C 1.50705 * 125.76599 * 164.73967 * 11 10 8 13 13 N 1.27639 * 108.46960 * 344.71969 * 11 10 8 14 14 O 1.41380 * 113.16709 * 359.67532 * 13 11 10 15 15 S 1.76142 * 109.27091 * 359.73047 * 4 3 2 16 16 C 1.34656 * 122.23235 * 180.02562 * 2 1 3 17 17 S 1.76199 * 125.92907 * 359.97438 * 16 2 1 18 18 C 1.76197 * 100.00148 * 179.97438 * 17 16 2 19 19 H 1.08005 * 120.00061 * 0.02562 * 18 17 16 20 20 C 1.38429 * 120.00384 * 179.97438 * 18 17 16 21 21 N 1.31810 * 120.00078 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99762 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47243 * 89.99617 * 22 20 18 24 24 H 1.48500 * 109.46885 * 209.99574 * 22 20 18 25 25 H 1.48503 * 109.46914 * 329.99523 * 22 20 18 26 26 H 1.08994 * 109.46891 * 269.97621 * 1 2 3 27 27 H 1.09000 * 109.46883 * 29.98114 * 1 2 3 28 28 H 1.09001 * 109.47104 * 149.98163 * 1 2 3 29 29 H 0.96990 * 120.00253 * 359.97438 * 5 4 3 30 30 H 1.08996 * 110.80310 * 260.25279 * 10 8 6 31 31 H 1.09002 * 110.80645 * 23.76437 * 10 8 6 32 32 H 1.08998 * 109.46907 * 179.97438 * 12 11 10 33 33 H 1.09001 * 109.47333 * 299.94962 * 12 11 10 34 34 H 1.08998 * 109.47320 * 59.95468 * 12 11 10 35 35 H 0.97006 * 119.99415 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1132 0.0000 4 6 3.5031 0.9978 -0.0005 5 7 4.4044 2.0547 -0.0011 6 6 5.7298 1.8100 -0.0011 7 8 6.1356 0.6671 -0.0010 8 6 6.7076 2.9568 -0.0012 9 1 6.4887 3.6543 -0.8097 10 6 6.7168 3.6783 1.3681 11 6 8.1848 4.0129 1.5522 12 6 8.7462 4.9948 2.5481 13 7 8.8643 3.3219 0.7215 14 8 8.0659 2.4782 -0.0844 15 16 3.9346 -0.7099 0.0067 16 6 2.2252 -1.1390 -0.0005 17 16 1.5698 -2.7746 -0.0006 18 6 3.0666 -3.7041 -0.0021 19 1 4.0188 -3.1944 -0.0023 20 6 3.0223 -5.0877 -0.0021 21 7 4.1421 -5.7830 -0.0027 22 14 1.3754 -5.9693 -0.0011 23 1 0.9381 -6.2029 -1.4009 24 1 1.5117 -7.2719 0.6988 25 1 0.3672 -5.1340 0.6996 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5141 29 1 4.0799 2.9687 -0.0015 30 1 6.1145 4.5859 1.3314 31 1 6.3692 3.0131 2.1586 32 1 9.8315 5.0283 2.4531 33 1 8.3341 5.9851 2.3538 34 1 8.4790 4.6816 3.5574 35 1 4.1109 -6.7526 -0.0023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000825138500.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:26 Heat of formation + Delta-G solvation = 3.420381 kcal Electronic energy + Delta-G solvation = -22095.972894 eV Core-core repulsion = 18541.277121 eV Total energy + Delta-G solvation = -3554.695773 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.14240 -40.78305 -40.02935 -36.38088 -34.97638 -34.84834 -32.82736 -31.60752 -29.33443 -28.83465 -27.93830 -26.67836 -24.44159 -22.64554 -21.51802 -20.87422 -19.92814 -19.32651 -18.60787 -17.72050 -17.42661 -17.29638 -17.08147 -16.58414 -16.34078 -15.74864 -15.53544 -15.02500 -14.77520 -14.53621 -14.47850 -13.86010 -13.62698 -13.53199 -13.50439 -13.40583 -13.25022 -13.18003 -13.12313 -12.74064 -12.37856 -12.22546 -11.95179 -11.74521 -11.54981 -11.33496 -10.99038 -10.66477 -10.63316 -10.56644 -9.68368 -8.63886 -8.57871 -6.37698 -0.37153 0.09253 0.69752 0.76259 0.92955 1.02108 1.10571 1.27848 1.38158 1.58555 1.88612 2.09989 2.12298 2.47286 2.75068 2.83090 3.20810 3.33159 3.48784 3.67150 3.76636 4.33829 4.35056 4.50247 4.58263 4.67867 4.75883 4.81391 4.85533 4.91342 4.96846 5.28955 5.41125 5.58161 5.77255 6.05490 6.28258 6.57911 6.73772 6.74113 8.49090 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.019308 B = 0.003184 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.806400 B = 8791.154857 C = 9931.317783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.053 3.947 3 N -0.474 5.474 4 C 0.231 3.769 5 N -0.588 5.588 6 C 0.510 3.490 7 O -0.528 6.528 8 C 0.037 3.963 9 H 0.159 0.841 10 C -0.141 4.141 11 C 0.110 3.890 12 C -0.088 4.088 13 N -0.335 5.335 14 O -0.223 6.223 15 S 0.152 5.848 16 C -0.273 4.273 17 S 0.068 5.932 18 C -0.570 4.570 19 H 0.065 0.935 20 C 0.047 3.953 21 N -0.908 5.908 22 Si 0.916 3.084 23 H -0.252 1.252 24 H -0.254 1.254 25 H -0.217 1.217 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.443 0.557 30 H 0.173 0.827 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.235 26.034 4.985 26.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 N -0.196 5.196 4 C -0.141 4.141 5 N -0.242 5.242 6 C 0.295 3.705 7 O -0.402 6.402 8 C -0.025 4.025 9 H 0.176 0.824 10 C -0.180 4.180 11 C -0.083 4.083 12 C -0.145 4.145 13 N -0.082 5.082 14 O -0.236 6.236 15 S 0.398 5.602 16 C -0.508 4.508 17 S 0.313 5.687 18 C -0.718 4.718 19 H 0.083 0.917 20 C -0.160 4.160 21 N -0.544 5.544 22 Si 0.735 3.265 23 H -0.176 1.176 24 H -0.178 1.178 25 H -0.140 1.140 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.286 0.714 30 H 0.191 0.809 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.145 0.855 34 H 0.129 0.871 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.136 24.041 4.467 24.453 hybrid contribution -0.231 -0.297 -0.099 0.389 sum -0.366 23.744 4.368 24.145 Atomic orbital electron populations 1.20337 0.84813 1.03664 1.03632 1.19871 0.98733 0.83770 1.06453 1.66081 1.02150 1.31109 1.20229 1.24108 0.90348 0.92768 1.06905 1.42220 1.03068 1.08374 1.70588 1.21221 0.82238 0.91262 0.75825 1.90805 1.77480 1.24542 1.47392 1.23624 0.83372 0.92497 1.02981 0.82371 1.23294 0.96043 1.04495 0.94174 1.27108 0.93841 0.94057 0.93276 1.20753 1.02182 0.96228 0.95362 1.78087 1.18611 1.04848 1.06618 1.91432 1.15634 1.51400 1.65144 1.86761 1.02532 0.98328 1.72614 1.28124 1.01183 1.04721 1.16727 1.81844 1.10531 0.89276 1.86999 1.22862 0.93309 0.95524 1.60107 0.91701 1.25784 1.01529 0.96878 0.91820 1.70133 1.29244 1.08294 1.46730 0.85869 0.79042 0.80494 0.81095 1.17617 1.17773 1.13969 0.89677 0.89066 0.90850 0.71441 0.80913 0.87524 0.90220 0.85539 0.87100 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.88 10.02 71.24 0.71 -1.16 16 2 C 0.05 2.01 6.73 41.77 0.28 2.29 16 3 N -0.47 -16.59 10.55 -184.86 -1.95 -18.54 16 4 C 0.23 8.17 8.40 179.15 1.50 9.68 16 5 N -0.59 -14.37 5.40 -309.57 -1.67 -16.04 16 6 C 0.51 14.22 7.10 87.66 0.62 14.85 16 7 O -0.53 -21.72 14.11 14.93 0.21 -21.51 16 8 C 0.04 0.70 4.25 30.45 0.13 0.83 16 9 H 0.16 1.68 8.14 -2.39 -0.02 1.66 16 10 C -0.14 -1.40 6.62 30.76 0.20 -1.19 16 11 C 0.11 1.43 7.45 46.90 0.35 1.77 16 12 C -0.09 -0.31 10.49 71.24 0.75 0.44 16 13 N -0.34 -8.05 12.45 -40.62 -0.51 -8.55 16 14 O -0.22 -6.66 11.84 -20.31 -0.24 -6.90 16 15 S 0.15 7.04 18.35 -56.49 -1.04 6.00 16 16 C -0.27 -12.31 6.67 67.00 0.45 -11.87 16 17 S 0.07 3.27 18.70 -56.49 -1.06 2.21 16 18 C -0.57 -33.52 9.80 67.87 0.67 -32.85 16 19 H 0.06 4.23 6.21 -2.91 -0.02 4.22 16 20 C 0.05 2.69 5.49 84.74 0.47 3.15 16 21 N -0.91 -55.67 13.98 21.59 0.30 -55.37 16 22 Si 0.92 41.06 27.73 68.60 1.90 42.96 16 23 H -0.25 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.25 -10.78 7.11 99.48 0.71 -10.08 16 25 H -0.22 -8.94 6.73 99.48 0.67 -8.27 16 26 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.07 2.13 7.37 -2.39 -0.02 2.11 16 29 H 0.44 6.07 8.82 -92.72 -0.82 5.25 16 30 H 0.17 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.11 1.26 7.90 -2.39 -0.02 1.24 16 32 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16 34 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.28 15.75 8.32 -92.70 -0.77 14.98 16 Total: -1.00 -87.01 332.69 2.39 -84.63 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 0.30 Total: 5.17 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 6.13 Total: -14.06 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -3.83 Total: -98.50 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.03 Total: -28.42 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.90 Total: 42.96 kcal Atomic # 16 Polarization: 10.31 SS G_CDS: -2.09 Total: 8.21 kcal Total: -87.01 2.39 -84.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000825138500.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.047 kcal (2) G-P(sol) polarization free energy of solvation -87.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds