Wall clock time and date at job start Tue Mar 31 2020 14:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28469 * 124.88431 * 2 1 4 4 C 1.31803 * 110.09866 * 179.97438 * 3 2 1 5 5 C 1.47716 * 126.51242 * 179.97438 * 4 3 2 6 6 O 1.21565 * 120.00402 * 185.67373 * 5 4 3 7 7 N 1.34778 * 119.99598 * 5.95251 * 5 4 3 8 8 C 1.46499 * 119.99768 * 174.53220 * 7 5 4 9 9 C 1.53005 * 109.47074 * 183.71362 * 8 7 5 10 10 C 1.50700 * 115.54768 * 65.39303 * 9 8 7 11 11 H 1.07994 * 120.00249 * 265.58756 * 10 9 8 12 12 C 1.37881 * 119.99923 * 85.58870 * 10 9 8 13 13 N 1.31514 * 119.99738 * 355.26110 * 12 10 9 14 14 Si 1.86792 * 120.00130 * 175.25325 * 12 10 9 15 15 H 1.48504 * 109.47148 * 89.99964 * 14 12 10 16 16 H 1.48499 * 109.47329 * 210.00222 * 14 12 10 17 17 H 1.48504 * 109.47581 * 330.00549 * 14 12 10 18 18 C 1.53002 * 117.49740 * 279.72742 * 9 8 7 19 19 C 1.53000 * 117.50206 * 211.06656 * 9 8 7 20 20 C 1.41498 * 106.97898 * 0.22092 * 4 3 2 21 21 C 1.35064 * 124.88490 * 179.97438 * 2 1 3 22 22 Br 1.89103 * 126.39912 * 0.02562 * 21 2 1 23 23 H 1.08994 * 109.47385 * 90.02858 * 1 2 3 24 24 H 1.09001 * 109.47037 * 210.03578 * 1 2 3 25 25 H 1.09001 * 109.47290 * 330.02614 * 1 2 3 26 26 H 0.97000 * 120.00339 * 354.53354 * 7 5 4 27 27 H 1.08994 * 109.47267 * 303.71308 * 8 7 5 28 28 H 1.08999 * 109.46983 * 63.72009 * 8 7 5 29 29 H 0.97001 * 120.00150 * 185.06684 * 13 12 10 30 30 H 1.08994 * 117.49816 * 359.97438 * 18 9 8 31 31 H 1.09006 * 117.49378 * 145.02349 * 18 9 8 32 32 H 1.08998 * 117.49834 * 214.98323 * 19 9 8 33 33 H 1.08999 * 117.49208 * 359.97294 * 19 9 8 34 34 H 1.08001 * 127.25790 * 179.73082 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4741 0.7175 0.0006 5 6 4.6269 1.6411 0.0002 6 8 5.7563 1.2036 -0.1033 7 7 4.4268 2.9685 0.1203 8 6 5.5722 3.8740 0.2405 9 6 5.0716 5.3038 0.4552 10 6 4.3372 5.5480 1.7483 11 1 3.2595 5.4850 1.7775 12 6 5.0413 5.8519 2.8942 13 7 6.3563 5.8372 2.8813 14 14 4.1274 6.2845 4.4648 15 1 3.8736 5.0477 5.2466 16 1 4.9484 7.2213 5.2732 17 1 2.8335 6.9284 4.1234 18 6 4.6096 6.0832 -0.7777 19 6 5.9314 6.4435 -0.0950 20 6 3.5282 -0.6965 -0.0043 21 6 2.2374 -1.1079 0.0005 22 35 1.6306 -2.8990 0.0006 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3633 -0.8897 0.5144 25 1 -0.3634 0.8902 0.5134 26 1 3.5244 3.3244 0.1271 27 1 6.1860 3.5727 1.0892 28 1 6.1670 3.8305 -0.6718 29 1 6.8510 5.9785 3.7037 30 1 4.6626 5.5774 -1.7417 31 1 3.7747 6.7729 -0.6533 32 1 5.9657 7.3700 0.4781 33 1 6.8539 6.1746 -0.6096 34 1 4.4122 -1.3169 -0.0093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831068632.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:29 Heat of formation + Delta-G solvation = 71.279662 kcal Electronic energy + Delta-G solvation = -19456.565343 eV Core-core repulsion = 16245.587906 eV Total energy + Delta-G solvation = -3210.977437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.76996 -38.80097 -36.63893 -33.72642 -33.26609 -32.55076 -31.93799 -29.54906 -28.01358 -26.16017 -25.16915 -22.68594 -21.39737 -21.12985 -19.53753 -19.21131 -17.67360 -16.58884 -16.50095 -15.94909 -14.91085 -14.72159 -14.38997 -14.22450 -13.89351 -13.55068 -13.17181 -12.98164 -12.86220 -12.56640 -11.82576 -11.59122 -11.50850 -11.36202 -10.97214 -10.90640 -10.64801 -10.51575 -10.25079 -9.77729 -9.47210 -9.23735 -9.11682 -8.96911 -8.46850 -8.27460 -8.06599 -6.05309 -4.13639 0.87493 1.48190 1.93483 2.30442 3.27726 3.35186 3.37101 3.71793 3.87180 4.19556 4.37966 4.76789 4.88718 5.03834 5.07066 5.22778 5.30431 5.44617 5.61322 6.04755 6.19425 6.34543 6.36245 6.49267 6.56809 6.71950 6.87849 7.11396 7.25665 7.44095 7.50472 7.67038 7.84396 8.31513 8.36484 8.81636 8.87733 9.53045 11.02689 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.019788 B = 0.003163 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.640087 B = 8849.269448 C = 9344.484294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.268 5.268 3 N -0.233 5.233 4 C 0.001 3.999 5 C 0.592 3.408 6 O -0.545 6.545 7 N -0.685 5.685 8 C 0.162 3.838 9 C 0.026 3.974 10 C -0.498 4.498 11 H 0.060 0.940 12 C 0.074 3.926 13 N -0.875 5.875 14 Si 0.889 3.111 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.211 4.211 19 C -0.145 4.145 20 C -0.133 4.133 21 C -0.011 4.011 22 Br 0.022 6.978 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.406 0.594 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.261 0.739 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.177 -16.718 -6.541 22.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.058 5.058 3 N -0.070 5.070 4 C -0.159 4.159 5 C 0.374 3.626 6 O -0.422 6.422 7 N -0.333 5.333 8 C 0.039 3.961 9 C 0.026 3.974 10 C -0.536 4.536 11 H 0.078 0.922 12 C -0.130 4.130 13 N -0.511 5.511 14 Si 0.717 3.283 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.248 4.248 19 C -0.183 4.183 20 C -0.164 4.164 21 C -0.213 4.213 22 Br 0.104 6.896 23 H 0.109 0.891 24 H 0.115 0.885 25 H 0.124 0.876 26 H 0.241 0.759 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -13.249 -16.608 -6.483 22.212 hybrid contribution -0.325 0.051 1.000 1.053 sum -13.574 -16.557 -5.483 22.100 Atomic orbital electron populations 1.22304 0.72772 1.06018 1.04984 1.45456 1.07904 1.01563 1.50913 1.73721 1.03338 1.12142 1.17840 1.22225 0.91024 0.93842 1.08803 1.16797 0.85946 0.81989 0.77829 1.90763 1.22523 1.77270 1.51615 1.45842 1.12023 1.05064 1.70398 1.21094 0.86239 0.89168 0.99565 1.19026 0.98934 0.87524 0.91955 1.20347 0.92567 1.48719 0.91931 0.92195 1.24973 0.94796 0.94531 0.98712 1.69972 1.05478 1.48356 1.27332 0.86640 0.79835 0.78410 0.83431 1.20707 1.21161 1.19830 1.23034 0.98993 1.06233 0.96562 1.22484 0.91855 1.01435 1.02567 1.21677 0.95444 0.94057 1.05199 1.23055 0.93051 0.88087 1.17125 1.96753 1.89096 1.05639 1.98120 0.89148 0.88544 0.87615 0.75911 0.90556 0.94211 0.92864 0.91596 0.90328 0.89742 0.91625 0.81059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 11.11 59.84 0.66 1.24 16 2 N -0.27 -3.30 3.70 -66.32 -0.25 -3.55 16 3 N -0.23 -3.64 11.68 33.42 0.39 -3.24 16 4 C 0.00 0.03 7.13 -82.77 -0.59 -0.56 16 5 C 0.59 12.08 7.82 -12.39 -0.10 11.98 16 6 O -0.54 -12.50 16.94 5.31 0.09 -12.41 16 7 N -0.69 -14.22 5.46 -61.29 -0.33 -14.55 16 8 C 0.16 3.74 5.51 -4.04 -0.02 3.72 16 9 C 0.03 0.63 1.38 -155.66 -0.21 0.41 16 10 C -0.50 -13.00 8.71 -34.44 -0.30 -13.30 16 11 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 12 C 0.07 1.98 5.39 -17.82 -0.10 1.88 16 13 N -0.88 -24.43 12.85 55.43 0.71 -23.72 16 14 Si 0.89 20.83 29.54 -169.99 -5.02 15.80 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 C -0.21 -4.43 9.96 -26.69 -0.27 -4.69 16 19 C -0.15 -3.33 9.36 -26.69 -0.25 -3.58 16 20 C -0.13 -1.97 10.78 -39.32 -0.42 -2.39 16 21 C -0.01 -0.14 7.33 -17.11 -0.13 -0.26 16 22 Br 0.02 0.20 33.27 -68.01 -2.26 -2.07 16 23 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.10 0.52 7.56 -51.93 -0.39 0.12 16 25 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.41 8.01 8.18 -40.82 -0.33 7.68 16 27 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 28 H 0.04 0.89 8.09 -51.93 -0.42 0.47 16 29 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 32 H 0.08 2.06 8.14 -51.93 -0.42 1.63 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.17 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -30.64 324.25 -7.58 -38.22 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.07 Total: 6.19 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -1.72 Total: -5.56 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.52 Total: -45.06 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 35 Polarization: 0.20 SS G_CDS: -2.26 Total: -2.07 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.64 -7.58 -38.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831068632.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.500 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds