Wall clock time and date at job start Tue Mar 31 2020 14:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28469 * 124.88431 * 2 1 4 4 C 1.31803 * 110.09866 * 179.97438 * 3 2 1 5 5 C 1.47716 * 126.51242 * 179.97438 * 4 3 2 6 6 O 1.21565 * 120.00402 * 185.67373 * 5 4 3 7 7 N 1.34778 * 119.99598 * 5.95251 * 5 4 3 8 8 C 1.46499 * 119.99768 * 174.53220 * 7 5 4 9 9 C 1.53005 * 109.47074 * 183.71362 * 8 7 5 10 10 C 1.50700 * 115.54768 * 65.39303 * 9 8 7 11 11 H 1.07994 * 120.00249 * 265.58756 * 10 9 8 12 12 C 1.37881 * 119.99923 * 85.58870 * 10 9 8 13 13 N 1.31514 * 119.99738 * 355.26110 * 12 10 9 14 14 Si 1.86792 * 120.00130 * 175.25325 * 12 10 9 15 15 H 1.48504 * 109.47148 * 89.99964 * 14 12 10 16 16 H 1.48499 * 109.47329 * 210.00222 * 14 12 10 17 17 H 1.48504 * 109.47581 * 330.00549 * 14 12 10 18 18 C 1.53002 * 117.49740 * 279.72742 * 9 8 7 19 19 C 1.53000 * 117.50206 * 211.06656 * 9 8 7 20 20 C 1.41498 * 106.97898 * 0.22092 * 4 3 2 21 21 C 1.35064 * 124.88490 * 179.97438 * 2 1 3 22 22 Br 1.89103 * 126.39912 * 0.02562 * 21 2 1 23 23 H 1.08994 * 109.47385 * 90.02858 * 1 2 3 24 24 H 1.09001 * 109.47037 * 210.03578 * 1 2 3 25 25 H 1.09001 * 109.47290 * 330.02614 * 1 2 3 26 26 H 0.97000 * 120.00339 * 354.53354 * 7 5 4 27 27 H 1.08994 * 109.47267 * 303.71308 * 8 7 5 28 28 H 1.08999 * 109.46983 * 63.72009 * 8 7 5 29 29 H 0.97001 * 120.00150 * 185.06684 * 13 12 10 30 30 H 1.08994 * 117.49816 * 359.97438 * 18 9 8 31 31 H 1.09006 * 117.49378 * 145.02349 * 18 9 8 32 32 H 1.08998 * 117.49834 * 214.98323 * 19 9 8 33 33 H 1.08999 * 117.49208 * 359.97294 * 19 9 8 34 34 H 1.08001 * 127.25790 * 179.73082 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0538 0.0000 4 6 3.4741 0.7175 0.0006 5 6 4.6269 1.6411 0.0002 6 8 5.7563 1.2036 -0.1033 7 7 4.4268 2.9685 0.1203 8 6 5.5722 3.8740 0.2405 9 6 5.0716 5.3038 0.4552 10 6 4.3372 5.5480 1.7483 11 1 3.2595 5.4850 1.7775 12 6 5.0413 5.8519 2.8942 13 7 6.3563 5.8372 2.8813 14 14 4.1274 6.2845 4.4648 15 1 3.8736 5.0477 5.2466 16 1 4.9484 7.2213 5.2732 17 1 2.8335 6.9284 4.1234 18 6 4.6096 6.0832 -0.7777 19 6 5.9314 6.4435 -0.0950 20 6 3.5282 -0.6965 -0.0043 21 6 2.2374 -1.1079 0.0005 22 35 1.6306 -2.8990 0.0006 23 1 -0.3634 -0.0005 -1.0276 24 1 -0.3633 -0.8897 0.5144 25 1 -0.3634 0.8902 0.5134 26 1 3.5244 3.3244 0.1271 27 1 6.1860 3.5727 1.0892 28 1 6.1670 3.8305 -0.6718 29 1 6.8510 5.9785 3.7037 30 1 4.6626 5.5774 -1.7417 31 1 3.7747 6.7729 -0.6533 32 1 5.9657 7.3700 0.4781 33 1 6.8539 6.1746 -0.6096 34 1 4.4122 -1.3169 -0.0093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831068632.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:28 Heat of formation + Delta-G solvation = 51.358404 kcal Electronic energy + Delta-G solvation = -19457.429194 eV Core-core repulsion = 16245.587906 eV Total energy + Delta-G solvation = -3211.841288 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.85382 -40.45751 -38.45136 -35.10583 -34.57174 -33.95315 -33.52668 -30.57013 -29.21869 -27.81351 -26.94772 -24.00675 -22.92816 -22.46440 -21.29762 -20.76487 -18.96503 -18.02475 -17.59191 -17.53702 -16.68734 -16.55217 -16.07787 -15.53666 -15.15300 -15.00466 -14.53096 -14.24258 -13.90395 -13.60361 -13.56074 -13.43689 -12.90241 -12.85025 -12.44671 -12.40234 -12.35149 -12.03071 -11.59072 -11.53774 -11.24343 -10.88118 -10.44614 -10.36692 -10.12973 -10.06755 -9.83585 -8.09173 -6.22068 -0.06080 0.35032 0.70927 1.41252 1.41932 1.43546 1.52109 2.20752 2.37189 2.43459 3.14129 3.18987 3.51473 3.85138 4.11028 4.24345 4.27565 4.30462 4.42369 4.55173 4.58507 4.66173 4.71539 4.97555 5.01896 5.07932 5.28521 5.39579 5.52523 5.59849 5.67415 5.78230 6.37568 6.45651 6.75789 6.84728 7.21029 7.47081 8.98473 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.019788 B = 0.003163 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.640087 B = 8849.269448 C = 9344.484294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.254 5.254 3 N -0.242 5.242 4 C -0.031 4.031 5 C 0.592 3.408 6 O -0.579 6.579 7 N -0.684 5.684 8 C 0.177 3.823 9 C 0.002 3.998 10 C -0.504 4.504 11 H 0.059 0.941 12 C 0.026 3.974 13 N -0.906 5.906 14 Si 0.948 3.052 15 H -0.282 1.282 16 H -0.287 1.287 17 H -0.264 1.264 18 C -0.178 4.178 19 C -0.153 4.153 20 C -0.149 4.149 21 C -0.004 4.004 22 Br 0.063 6.937 23 H 0.115 0.885 24 H 0.120 0.880 25 H 0.115 0.885 26 H 0.411 0.589 27 H 0.036 0.964 28 H 0.043 0.957 29 H 0.259 0.741 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.899 -17.848 -7.024 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.045 5.045 3 N -0.082 5.082 4 C -0.189 4.189 5 C 0.377 3.623 6 O -0.458 6.458 7 N -0.332 5.332 8 C 0.054 3.946 9 C 0.001 3.999 10 C -0.542 4.542 11 H 0.078 0.922 12 C -0.175 4.175 13 N -0.544 5.544 14 Si 0.774 3.226 15 H -0.209 1.209 16 H -0.212 1.212 17 H -0.188 1.188 18 C -0.215 4.215 19 C -0.191 4.191 20 C -0.180 4.180 21 C -0.207 4.207 22 Br 0.144 6.856 23 H 0.133 0.867 24 H 0.138 0.862 25 H 0.133 0.867 26 H 0.247 0.753 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -16.011 -17.730 -6.975 24.888 hybrid contribution 0.387 0.272 1.112 1.209 sum -15.625 -17.459 -5.863 24.152 Atomic orbital electron populations 1.22833 0.69709 1.07711 1.07147 1.45949 1.09462 1.00836 1.48284 1.73639 1.02852 1.13544 1.18130 1.21743 0.90801 0.94206 1.12134 1.17188 0.86605 0.81995 0.76526 1.90725 1.24267 1.77793 1.53043 1.45722 1.11512 1.05197 1.70749 1.20705 0.86622 0.89365 0.97943 1.19047 1.00201 0.87891 0.92719 1.20635 0.92689 1.47820 0.93025 0.92245 1.25671 0.95439 0.94747 1.01615 1.70091 1.06746 1.49743 1.27816 0.85717 0.79001 0.77903 0.80004 1.20856 1.21239 1.18794 1.23022 0.97709 1.04589 0.96218 1.22423 0.93310 1.00285 1.03098 1.21797 0.96952 0.93100 1.06103 1.23296 0.92385 0.89884 1.15110 1.96804 1.88469 1.02340 1.97956 0.86717 0.86189 0.86697 0.75278 0.94579 0.93853 0.93172 0.89253 0.89603 0.91669 0.90825 0.80724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 11.11 127.77 1.42 2.13 16 2 N -0.25 -5.69 3.70 -363.75 -1.35 -7.03 16 3 N -0.24 -7.28 11.68 -48.18 -0.56 -7.85 16 4 C -0.03 -1.07 7.13 42.46 0.30 -0.76 16 5 C 0.59 24.78 7.82 86.75 0.68 25.46 16 6 O -0.58 -27.57 16.94 -3.92 -0.07 -27.64 16 7 N -0.68 -28.85 5.46 -466.10 -2.54 -31.39 16 8 C 0.18 8.40 5.51 86.38 0.48 8.88 16 9 C 0.00 0.10 1.38 -52.93 -0.07 0.03 16 10 C -0.50 -26.41 8.71 25.60 0.22 -26.19 16 11 H 0.06 3.05 7.82 -2.91 -0.02 3.03 16 12 C 0.03 1.40 5.39 84.66 0.46 1.86 16 13 N -0.91 -51.79 12.85 21.45 0.28 -51.51 16 14 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 16 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 C -0.18 -7.22 9.96 30.62 0.30 -6.92 16 19 C -0.15 -7.02 9.36 30.62 0.29 -6.73 16 20 C -0.15 -4.32 10.78 22.44 0.24 -4.08 16 21 C 0.00 -0.08 7.33 83.56 0.61 0.53 16 22 Br 0.06 0.94 33.27 -20.37 -0.68 0.26 16 23 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.12 0.80 7.56 -2.39 -0.02 0.78 16 25 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.41 16.28 8.18 -92.71 -0.76 15.52 16 27 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.04 1.99 8.09 -2.39 -0.02 1.97 16 29 H 0.26 14.28 8.32 -92.71 -0.77 13.51 16 30 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 31 H 0.09 3.36 8.14 -2.38 -0.02 3.34 16 32 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.07 3.20 8.14 -2.39 -0.02 3.19 16 34 H 0.18 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -67.08 324.25 2.41 -64.68 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 0.37 Total: 21.27 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 4.93 Total: -5.79 kcal Atomic # 7 Polarization: -93.61 SS G_CDS: -4.18 Total: -97.78 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.07 Total: -27.64 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 35 Polarization: 0.94 SS G_CDS: -0.68 Total: 0.26 kcal Total: -67.08 2.41 -64.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831068632.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.035 kcal (2) G-P(sol) polarization free energy of solvation -67.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds