Wall clock time and date at job start Tue Mar 31 2020 14:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99955 * 2 1 4 4 N 1.46499 * 109.46900 * 125.00075 * 3 2 1 5 5 C 1.46504 * 120.00046 * 263.38920 * 4 3 2 6 6 C 1.50706 * 109.47231 * 269.99521 * 5 4 3 7 7 H 1.07997 * 119.99622 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00050 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00411 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00010 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47148 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47283 * 120.00147 * 10 8 6 13 13 H 1.48507 * 109.47488 * 240.00483 * 10 8 6 14 14 C 1.34774 * 120.00168 * 83.38585 * 4 3 2 15 15 O 1.21576 * 120.00419 * 183.93604 * 14 4 3 16 16 C 1.47714 * 119.99622 * 3.93945 * 14 4 3 17 17 C 1.41507 * 126.50988 * 173.64614 * 16 14 4 18 18 C 1.35475 * 105.48390 * 180.02562 * 17 16 14 19 19 Br 1.89108 * 126.39478 * 180.02562 * 18 17 16 20 20 N 1.35066 * 107.20696 * 359.97438 * 18 17 16 21 21 C 1.46505 * 124.88281 * 180.02562 * 20 18 17 22 22 N 1.28459 * 110.22812 * 359.97438 * 20 18 17 23 23 H 1.08001 * 120.00059 * 179.97438 * 1 2 3 24 24 H 1.08001 * 119.99808 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.00349 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47058 * 5.00661 * 3 2 1 27 27 H 1.08991 * 109.47681 * 245.00220 * 3 2 1 28 28 H 1.08997 * 109.47384 * 29.99693 * 5 4 3 29 29 H 1.09005 * 109.46940 * 149.99836 * 5 4 3 30 30 H 0.96998 * 120.00223 * 180.02562 * 9 8 6 31 31 H 1.07993 * 127.25633 * 0.07643 * 17 16 14 32 32 H 1.08998 * 109.47263 * 270.00010 * 21 20 18 33 33 H 1.09000 * 109.46855 * 30.00346 * 21 20 18 34 34 H 1.09000 * 109.46850 * 149.99781 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.6095 1.9946 2.3802 6 6 3.0255 3.4422 2.3293 7 1 3.5257 3.8298 1.4541 8 6 2.7666 4.2719 3.3995 9 7 2.1571 3.8001 4.4651 10 14 3.2817 6.0664 3.3361 11 1 3.9441 6.3456 2.0366 12 1 2.0824 6.9308 3.4757 13 1 4.2277 6.3494 4.4453 14 6 4.2030 0.7467 1.0236 15 8 4.9466 0.7061 1.9845 16 6 4.6249 0.1547 -0.2623 17 6 5.9004 -0.3777 -0.5658 18 6 5.8194 -0.8007 -1.8503 19 35 7.2011 -1.6142 -2.8530 20 7 4.5673 -0.5338 -2.2807 21 6 4.0602 -0.8351 -3.6218 22 7 3.8847 0.0211 -1.3446 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3585 2.1316 0.0897 27 1 2.6212 1.4027 -0.9313 28 1 1.5288 1.9314 2.5075 29 1 3.1034 1.5039 3.2189 30 1 1.9746 4.3839 5.2179 31 1 6.7574 -0.4355 0.0887 32 1 4.2431 0.0151 -4.2788 33 1 4.5711 -1.7143 -4.0143 34 1 2.9891 -1.0304 -3.5698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000832500596.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:37 Heat of formation + Delta-G solvation = 85.881198 kcal Electronic energy + Delta-G solvation = -19888.337144 eV Core-core repulsion = 16677.992877 eV Total energy + Delta-G solvation = -3210.344267 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.71503 -38.74941 -35.61808 -33.67059 -33.09180 -32.53821 -31.96009 -29.52824 -28.25747 -26.90330 -25.41512 -23.64200 -21.73134 -21.14150 -19.85111 -18.58685 -17.22621 -16.59290 -16.38046 -16.13034 -15.32320 -14.62844 -14.24765 -14.19034 -14.03409 -13.36728 -13.16137 -12.94269 -12.73884 -12.59696 -12.16169 -11.82031 -11.50176 -11.25579 -11.06278 -10.94026 -10.82645 -10.56779 -10.42805 -10.16202 -9.58840 -9.20461 -9.15830 -9.07202 -8.90817 -8.40396 -7.64959 -6.01260 -4.06041 0.94107 1.55203 2.06224 2.37160 2.60511 3.32516 3.39954 3.44371 3.89596 4.04427 4.25478 4.47896 4.78660 4.90433 5.06607 5.09392 5.31604 5.34657 5.45446 5.57028 5.64406 5.93837 6.15139 6.25694 6.30056 6.55691 6.94289 7.03151 7.15939 7.47570 7.57646 7.78150 7.95821 8.25539 8.40727 8.90279 9.06869 9.58891 11.06842 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.003657 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.733110 B = 7654.343165 C = 8540.357973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 C 0.131 3.869 4 N -0.576 5.576 5 C 0.246 3.754 6 C -0.527 4.527 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.282 1.282 14 C 0.588 3.412 15 O -0.530 6.530 16 C 0.006 3.994 17 C -0.134 4.134 18 C -0.010 4.010 19 Br 0.018 6.982 20 N -0.274 5.274 21 C 0.081 3.919 22 N -0.233 5.233 23 H 0.091 0.909 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.036 0.964 29 H 0.047 0.953 30 H 0.263 0.737 31 H 0.171 0.829 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 -12.998 -20.281 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.161 4.161 3 C 0.007 3.993 4 N -0.306 5.306 5 C 0.127 3.873 6 C -0.565 4.565 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.372 3.628 15 O -0.405 6.405 16 C -0.154 4.154 17 C -0.164 4.164 18 C -0.212 4.212 19 Br 0.100 6.900 20 N -0.064 5.064 21 C -0.060 4.060 22 N -0.070 5.070 23 H 0.109 0.891 24 H 0.115 0.885 25 H 0.117 0.883 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.188 0.812 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.610 -13.053 -20.468 24.710 hybrid contribution 0.666 0.945 0.366 1.213 sum 5.276 -12.107 -20.102 24.053 Atomic orbital electron populations 1.23736 0.95799 1.01421 1.02646 1.23292 0.95855 0.99024 0.97970 1.20862 0.92919 0.94875 0.90610 1.48100 1.13376 1.52804 1.16341 1.19385 0.96104 0.91868 0.79946 1.21477 1.38523 0.94262 1.02277 0.92308 1.24921 0.95076 0.98915 0.95102 1.69947 1.41659 1.35896 1.05766 0.86445 0.78250 0.84600 0.78146 1.19797 1.20986 1.20840 1.16834 0.82459 0.78818 0.84659 1.90777 1.53008 1.59270 1.37469 1.22451 0.92818 1.05617 0.94556 1.21683 0.99353 1.02069 0.93339 1.23042 0.88771 1.12536 0.96881 1.96741 1.42829 1.79307 1.71108 1.45641 1.06727 1.42056 1.11989 1.22256 1.02630 1.03138 0.77942 1.73998 1.22191 1.13766 0.96997 0.89113 0.88473 0.88267 0.89822 0.88543 0.94617 0.93517 0.92766 0.81172 0.89292 0.88715 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.79 14.32 29.01 0.42 -2.37 16 2 C -0.14 -2.26 8.96 -36.03 -0.32 -2.59 16 3 C 0.13 2.39 5.45 -5.19 -0.03 2.36 16 4 N -0.58 -13.01 2.46 -177.60 -0.44 -13.44 16 5 C 0.25 6.58 5.16 -5.19 -0.03 6.56 16 6 C -0.53 -15.13 9.39 -34.44 -0.32 -15.45 16 7 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 10 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.59 13.29 7.61 -12.39 -0.09 13.20 16 15 O -0.53 -13.84 16.49 5.30 0.09 -13.75 16 16 C 0.01 0.10 6.80 -82.77 -0.56 -0.46 16 17 C -0.13 -2.09 10.79 -39.32 -0.42 -2.52 16 18 C -0.01 -0.13 7.33 -17.12 -0.13 -0.25 16 19 Br 0.02 0.17 33.27 -68.01 -2.26 -2.09 16 20 N -0.27 -3.35 3.70 -66.32 -0.25 -3.59 16 21 C 0.08 0.57 11.11 59.85 0.66 1.23 16 22 N -0.23 -3.56 7.63 33.42 0.26 -3.30 16 23 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 24 H 0.10 1.33 7.84 -52.49 -0.41 0.92 16 25 H 0.10 1.60 7.82 -52.49 -0.41 1.19 16 26 H 0.08 1.54 7.67 -51.93 -0.40 1.14 16 27 H 0.10 1.66 5.38 -51.93 -0.28 1.38 16 28 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 29 H 0.05 1.40 7.37 -51.93 -0.38 1.01 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.49 7.56 -51.93 -0.39 0.10 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 320.29 15.07 4.83 4.83 Total: -1.00 -33.47 320.29 -6.91 -40.39 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -3.93 Total: -1.45 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -0.92 Total: 1.39 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.31 Total: -46.33 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.09 Total: -13.75 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 35 Polarization: 0.17 SS G_CDS: -2.26 Total: -2.09 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.47 -6.91 -40.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832500596.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.267 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds