Wall clock time and date at job start Tue Mar 31 2020 14:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99955 * 2 1 4 4 N 1.46499 * 109.46900 * 125.00075 * 3 2 1 5 5 C 1.46504 * 120.00046 * 263.38920 * 4 3 2 6 6 C 1.50706 * 109.47231 * 269.99521 * 5 4 3 7 7 H 1.07997 * 119.99622 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00050 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00411 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00010 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47148 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47283 * 120.00147 * 10 8 6 13 13 H 1.48507 * 109.47488 * 240.00483 * 10 8 6 14 14 C 1.34774 * 120.00168 * 83.38585 * 4 3 2 15 15 O 1.21576 * 120.00419 * 183.93604 * 14 4 3 16 16 C 1.47714 * 119.99622 * 3.93945 * 14 4 3 17 17 C 1.41507 * 126.50988 * 173.64614 * 16 14 4 18 18 C 1.35475 * 105.48390 * 180.02562 * 17 16 14 19 19 Br 1.89108 * 126.39478 * 180.02562 * 18 17 16 20 20 N 1.35066 * 107.20696 * 359.97438 * 18 17 16 21 21 C 1.46505 * 124.88281 * 180.02562 * 20 18 17 22 22 N 1.28459 * 110.22812 * 359.97438 * 20 18 17 23 23 H 1.08001 * 120.00059 * 179.97438 * 1 2 3 24 24 H 1.08001 * 119.99808 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.00349 * 180.02562 * 2 1 3 26 26 H 1.09003 * 109.47058 * 5.00661 * 3 2 1 27 27 H 1.08991 * 109.47681 * 245.00220 * 3 2 1 28 28 H 1.08997 * 109.47384 * 29.99693 * 5 4 3 29 29 H 1.09005 * 109.46940 * 149.99836 * 5 4 3 30 30 H 0.96998 * 120.00223 * 180.02562 * 9 8 6 31 31 H 1.07993 * 127.25633 * 0.07643 * 17 16 14 32 32 H 1.08998 * 109.47263 * 270.00010 * 21 20 18 33 33 H 1.09000 * 109.46855 * 30.00346 * 21 20 18 34 34 H 1.09000 * 109.46850 * 149.99781 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.6095 1.9946 2.3802 6 6 3.0255 3.4422 2.3293 7 1 3.5257 3.8298 1.4541 8 6 2.7666 4.2719 3.3995 9 7 2.1571 3.8001 4.4651 10 14 3.2817 6.0664 3.3361 11 1 3.9441 6.3456 2.0366 12 1 2.0824 6.9308 3.4757 13 1 4.2277 6.3494 4.4453 14 6 4.2030 0.7467 1.0236 15 8 4.9466 0.7061 1.9845 16 6 4.6249 0.1547 -0.2623 17 6 5.9004 -0.3777 -0.5658 18 6 5.8194 -0.8007 -1.8503 19 35 7.2011 -1.6142 -2.8530 20 7 4.5673 -0.5338 -2.2807 21 6 4.0602 -0.8351 -3.6218 22 7 3.8847 0.0211 -1.3446 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9353 0.0004 25 1 1.8500 -0.9353 -0.0004 26 1 1.3585 2.1316 0.0897 27 1 2.6212 1.4027 -0.9313 28 1 1.5288 1.9314 2.5075 29 1 3.1034 1.5039 3.2189 30 1 1.9746 4.3839 5.2179 31 1 6.7574 -0.4355 0.0887 32 1 4.2431 0.0151 -4.2788 33 1 4.5711 -1.7143 -4.0143 34 1 2.9891 -1.0304 -3.5698 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000832500596.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:37 Heat of formation + Delta-G solvation = 64.419513 kcal Electronic energy + Delta-G solvation = -19889.267793 eV Core-core repulsion = 16677.992877 eV Total energy + Delta-G solvation = -3211.274916 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 327.032 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.85654 -40.49264 -37.29776 -35.21518 -34.54332 -33.70550 -33.50216 -30.66550 -29.88954 -28.23220 -26.94609 -25.42199 -23.27222 -22.29384 -21.19246 -20.02962 -18.64023 -18.45914 -17.68212 -17.44356 -17.13310 -16.18003 -16.08078 -15.65438 -15.10270 -14.66389 -14.37399 -14.37149 -14.13235 -13.71188 -13.53360 -13.33167 -13.14783 -12.95093 -12.60725 -12.44897 -12.24483 -12.18873 -12.07298 -11.67078 -11.49603 -10.99918 -10.64562 -10.32838 -10.25062 -10.04726 -9.50181 -8.22087 -6.37222 -0.04103 0.38955 0.73881 1.33873 1.37918 1.40145 1.46300 1.52515 2.24289 2.42323 2.47484 3.07407 3.15486 3.73382 4.08019 4.13563 4.25334 4.29831 4.33329 4.39099 4.57333 4.61042 4.84427 4.94197 5.04839 5.13568 5.21549 5.45655 5.52369 5.71970 5.76464 5.96777 6.04499 6.52603 6.70109 6.71481 7.21365 7.37438 8.85685 Molecular weight = 327.03amu Principal moments of inertia in cm(-1) A = 0.018335 B = 0.003657 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.733110 B = 7654.343165 C = 8540.357973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.162 4.162 3 C 0.134 3.866 4 N -0.583 5.583 5 C 0.263 3.737 6 C -0.545 4.545 7 H 0.052 0.948 8 C 0.011 3.989 9 N -0.926 5.926 10 Si 0.969 3.031 11 H -0.269 1.269 12 H -0.267 1.267 13 H -0.279 1.279 14 C 0.582 3.418 15 O -0.582 6.582 16 C -0.028 4.028 17 C -0.153 4.153 18 C 0.000 4.000 19 Br 0.061 6.939 20 N -0.256 5.256 21 C 0.064 3.936 22 N -0.227 5.227 23 H 0.117 0.883 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.077 0.923 27 H 0.109 0.891 28 H 0.027 0.973 29 H 0.003 0.997 30 H 0.268 0.732 31 H 0.168 0.832 32 H 0.111 0.889 33 H 0.119 0.881 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.727 -13.235 -23.342 27.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.181 4.181 3 C 0.011 3.989 4 N -0.312 5.312 5 C 0.142 3.858 6 C -0.584 4.584 7 H 0.070 0.930 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.793 3.207 11 H -0.193 1.193 12 H -0.192 1.192 13 H -0.205 1.205 14 C 0.369 3.631 15 O -0.462 6.462 16 C -0.186 4.186 17 C -0.184 4.184 18 C -0.203 4.203 19 Br 0.142 6.858 20 N -0.047 5.047 21 C -0.073 4.073 22 N -0.066 5.066 23 H 0.135 0.865 24 H 0.120 0.880 25 H 0.115 0.885 26 H 0.095 0.905 27 H 0.126 0.874 28 H 0.045 0.955 29 H 0.021 0.979 30 H 0.077 0.923 31 H 0.186 0.814 32 H 0.129 0.871 33 H 0.137 0.863 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.398 -13.303 -23.578 27.427 hybrid contribution 0.712 0.890 1.155 1.623 sum 5.111 -12.413 -22.423 26.135 Atomic orbital electron populations 1.23985 0.95075 1.02862 0.99225 1.23048 0.96383 0.97610 1.01035 1.21009 0.92324 0.96158 0.89370 1.48081 1.14517 1.52473 1.16121 1.18845 0.94739 0.91261 0.80943 1.21689 1.38949 0.95275 1.02443 0.92972 1.25837 0.94756 1.03744 0.94481 1.70059 1.42287 1.37772 1.06435 0.85344 0.78336 0.78778 0.78198 1.19292 1.19242 1.20509 1.17386 0.81697 0.78101 0.85891 1.90718 1.54339 1.61360 1.39763 1.21710 0.94506 1.08589 0.93774 1.21737 0.98593 1.03089 0.94959 1.23215 0.89714 1.11130 0.96266 1.96794 1.41023 1.78390 1.69567 1.46144 1.06365 1.39415 1.12741 1.22828 1.03942 1.05186 0.75368 1.73858 1.22144 1.13831 0.96772 0.86529 0.88046 0.88451 0.90491 0.87382 0.95532 0.97863 0.92275 0.81449 0.87060 0.86253 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.57 14.32 67.78 0.97 -3.60 16 2 C -0.16 -5.06 8.96 25.65 0.23 -4.83 16 3 C 0.13 4.95 5.45 85.63 0.47 5.41 16 4 N -0.58 -27.67 2.46 -834.06 -2.05 -29.72 16 5 C 0.26 14.94 5.16 85.63 0.44 15.38 16 6 C -0.55 -32.51 9.39 25.60 0.24 -32.27 16 7 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 8 C 0.01 0.65 5.46 84.65 0.46 1.11 16 9 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 10 Si 0.97 45.69 29.54 68.60 2.03 47.72 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 14 C 0.58 27.88 7.61 86.75 0.66 28.54 16 15 O -0.58 -32.72 16.49 -3.96 -0.07 -32.78 16 16 C -0.03 -1.06 6.80 42.46 0.29 -0.77 16 17 C -0.15 -4.84 10.79 22.44 0.24 -4.59 16 18 C 0.00 0.00 7.33 83.56 0.61 0.61 16 19 Br 0.06 0.96 33.27 -20.37 -0.68 0.28 16 20 N -0.26 -5.65 3.70 -363.72 -1.35 -7.00 16 21 C 0.06 0.66 11.11 127.77 1.42 2.08 16 22 N -0.23 -6.74 7.63 -48.18 -0.37 -7.11 16 23 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 24 H 0.10 2.60 7.84 -2.91 -0.02 2.58 16 25 H 0.10 3.10 7.82 -2.91 -0.02 3.08 16 26 H 0.08 2.89 7.67 -2.39 -0.02 2.87 16 27 H 0.11 3.70 5.38 -2.39 -0.01 3.69 16 28 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 29 H 0.00 0.21 7.37 -2.38 -0.02 0.19 16 30 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 31 H 0.17 5.18 8.06 -2.91 -0.02 5.16 16 32 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.12 0.69 7.56 -2.39 -0.02 0.67 16 34 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -76.56 320.29 4.95 -71.61 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 1.11 Total: 6.44 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 6.03 Total: 7.06 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -3.48 Total: -100.32 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.07 Total: -32.78 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 35 Polarization: 0.96 SS G_CDS: -0.68 Total: 0.28 kcal Total: -76.56 4.95 -71.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000832500596.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.031 kcal (2) G-P(sol) polarization free energy of solvation -76.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds