Wall clock time and date at job start Tue Mar 31 2020 15:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 115.55005 * 2 1 4 4 C 1.50702 * 109.46769 * 295.92073 * 3 2 1 5 5 O 1.21286 * 120.00278 * 356.96110 * 4 3 2 6 6 N 1.34779 * 119.99674 * 176.95380 * 4 3 2 7 7 C 1.39930 * 119.99832 * 174.98573 * 6 4 3 8 8 C 1.39288 * 119.94564 * 144.55977 * 7 6 4 9 9 C 1.38493 * 120.43116 * 180.27333 * 8 7 6 10 10 C 1.37689 * 120.32069 * 0.02562 * 9 8 7 11 11 C 1.40741 * 119.88321 * 0.02562 * 10 9 8 12 12 C 1.41408 * 120.21035 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00027 * 206.78303 * 12 11 10 14 14 C 1.39940 * 119.99630 * 26.78232 * 12 11 10 15 15 N 1.30821 * 120.00086 * 14.88507 * 14 12 11 16 16 Si 1.86796 * 119.99702 * 194.88234 * 14 12 11 17 17 H 1.48498 * 109.47199 * 90.00021 * 16 14 12 18 18 H 1.48500 * 109.47313 * 210.00037 * 16 14 12 19 19 H 1.48503 * 109.47257 * 330.00133 * 16 14 12 20 20 C 1.38246 * 119.95197 * 324.83863 * 7 6 4 21 21 C 1.52997 * 117.49456 * 145.66548 * 2 1 3 22 22 C 1.53004 * 117.50007 * 214.32448 * 2 1 3 23 23 Cl 1.80298 * 117.49648 * 359.97438 * 22 2 1 24 24 Cl 1.80299 * 117.49595 * 144.99835 * 22 2 1 25 25 H 1.09005 * 109.46657 * 64.10083 * 1 2 3 26 26 H 1.09005 * 109.46904 * 184.09684 * 1 2 3 27 27 H 1.08994 * 109.47517 * 304.10081 * 1 2 3 28 28 H 1.08996 * 109.47173 * 175.92096 * 3 2 1 29 29 H 1.08997 * 109.46709 * 55.91929 * 3 2 1 30 30 H 0.96997 * 120.00097 * 354.99922 * 6 4 3 31 31 H 1.07998 * 119.78838 * 0.28012 * 8 7 6 32 32 H 1.08001 * 119.84405 * 180.02562 * 9 8 7 33 33 H 1.07992 * 120.05767 * 180.02562 * 10 9 8 34 34 H 0.97003 * 120.00432 * 179.97438 * 15 14 12 35 35 H 1.07999 * 120.15763 * 359.74088 * 20 7 6 36 36 H 1.09005 * 117.49936 * 214.99955 * 21 2 1 37 37 H 1.08997 * 117.50789 * 0.02642 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.8462 2.1014 -1.2779 5 8 1.1887 1.5437 -2.1309 6 7 2.2693 3.3661 -1.4728 7 6 2.0411 3.9990 -2.6998 8 6 1.7647 5.3636 -2.7374 9 6 1.5317 5.9991 -3.9457 10 6 1.5703 5.2877 -5.1240 11 6 1.8472 3.9080 -5.1014 12 6 1.8880 3.1706 -6.3073 13 1 1.6679 2.1133 -6.3014 14 6 2.2135 3.8110 -7.5082 15 7 2.7578 5.0004 -7.4887 16 14 1.8710 2.9673 -9.1392 17 1 0.5077 3.3265 -9.6056 18 1 2.8705 3.4090 -10.1447 19 1 1.9623 1.4954 -8.9640 20 6 2.0846 3.2677 -3.8722 21 6 2.2364 -1.1207 0.7655 22 6 2.2365 -1.1208 -0.7653 23 17 1.2023 -2.3409 -1.5974 24 17 3.7829 -0.7137 -1.5981 25 1 -0.3633 0.4489 -0.9245 26 1 -0.3633 -1.0251 0.0734 27 1 -0.3634 0.5761 0.8509 28 1 3.2714 1.2661 0.0731 29 1 1.8270 1.9565 0.8512 30 1 2.7323 3.8375 -0.7627 31 1 1.7320 5.9300 -1.8184 32 1 1.3187 7.0577 -3.9639 33 1 1.3883 5.7876 -6.0638 34 1 2.9838 5.4442 -8.3211 35 1 2.2985 2.2095 -3.8440 36 1 3.1713 -0.8746 1.2690 37 1 1.6112 -1.8582 1.2687 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837074089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:08 Heat of formation + Delta-G solvation = -6.267403 kcal Electronic energy + Delta-G solvation = -22904.438557 eV Core-core repulsion = 19312.942526 eV Total energy + Delta-G solvation = -3591.496031 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.03920 -38.43231 -36.98536 -35.98481 -35.69950 -34.37058 -32.99515 -30.15473 -29.77840 -28.54342 -27.31806 -25.24673 -22.48750 -21.94919 -20.86875 -19.88944 -19.11098 -17.65685 -16.69941 -16.33760 -15.77373 -15.49125 -14.88466 -14.60611 -14.48905 -13.96757 -13.50424 -13.18594 -12.97387 -12.85448 -12.45620 -12.40644 -12.15289 -11.96654 -11.62741 -11.61846 -11.54084 -11.12462 -11.11408 -11.10504 -10.87389 -10.72521 -10.42275 -10.37672 -10.08305 -9.67881 -9.57406 -9.34436 -9.05138 -8.87702 -7.40007 -6.88423 -6.65718 -4.29997 1.22678 2.16824 2.62881 2.87414 2.98060 3.12688 3.18043 3.23276 3.39207 3.65556 3.97140 4.00964 4.21092 4.51506 4.69424 4.76859 5.15072 5.22229 5.29474 5.33371 5.57160 5.69175 5.74957 5.81454 6.26240 6.28178 6.41580 6.81013 7.05952 7.09016 7.12136 7.29980 7.59815 7.76972 8.00485 8.14378 8.21057 8.30515 8.67588 8.78311 8.98795 9.02713 10.27471 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.003934 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.659393 B = 7116.071259 C = 8365.747791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.065 4.065 3 C -0.114 4.114 4 C 0.506 3.494 5 O -0.501 6.501 6 N -0.670 5.670 7 C 0.151 3.849 8 C -0.260 4.260 9 C -0.094 4.094 10 C -0.169 4.169 11 C 0.120 3.880 12 C -0.458 4.458 13 H 0.078 0.922 14 C 0.076 3.924 15 N -0.799 5.799 16 Si 0.908 3.092 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.262 1.262 20 C -0.204 4.204 21 C -0.145 4.145 22 C 0.016 3.984 23 Cl -0.092 7.092 24 Cl -0.089 7.089 25 H 0.090 0.910 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.396 0.604 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.279 0.721 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.085 -8.385 16.722 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.067 4.067 3 C -0.154 4.154 4 C 0.292 3.708 5 O -0.375 6.375 6 N -0.315 5.315 7 C 0.059 3.941 8 C -0.282 4.282 9 C -0.113 4.113 10 C -0.189 4.189 11 C 0.117 3.883 12 C -0.488 4.488 13 H 0.096 0.904 14 C -0.141 4.141 15 N -0.425 5.425 16 Si 0.732 3.268 17 H -0.193 1.193 18 H -0.204 1.204 19 H -0.186 1.186 20 C -0.226 4.226 21 C -0.183 4.183 22 C -0.035 4.035 23 Cl -0.065 7.065 24 Cl -0.062 7.062 25 H 0.108 0.892 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.230 0.770 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.137 0.863 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.235 -8.734 15.809 18.063 hybrid contribution 0.401 -0.097 -0.553 0.690 sum 0.166 -8.831 15.256 17.629 Atomic orbital electron populations 1.21531 0.89616 1.02876 1.04201 1.21912 0.96882 0.89736 0.98156 1.21359 1.02352 0.93737 0.97966 1.20246 0.80173 0.81887 0.88490 1.90766 1.36643 1.65562 1.44526 1.43436 1.58250 1.14246 1.15520 1.17403 1.01392 0.91734 0.83531 1.20046 1.18112 0.93149 0.96844 1.20463 1.00664 0.97432 0.92789 1.21343 1.05622 0.95234 0.96696 1.17495 0.87209 0.91945 0.91700 1.19587 1.41313 0.96751 0.91129 0.90404 1.25875 0.92398 0.94660 1.01180 1.69815 1.29629 1.13623 1.29443 0.86317 0.78987 0.80741 0.80723 1.19306 1.20382 1.18596 1.20986 1.11293 0.99395 0.90906 1.24201 1.03690 1.00645 0.89724 1.26769 0.87890 0.98146 0.90712 1.98735 1.68235 1.58025 1.81487 1.98760 1.32655 1.93432 1.81352 0.89161 0.91723 0.91478 0.88174 0.87669 0.77012 0.89411 0.89142 0.86402 0.91040 0.87573 0.86314 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.87 37.16 0.33 -1.05 16 2 C -0.07 -0.71 1.62 -154.51 -0.25 -0.96 16 3 C -0.11 -1.24 5.04 -27.88 -0.14 -1.38 16 4 C 0.51 8.32 7.34 -10.98 -0.08 8.24 16 5 O -0.50 -10.35 12.23 5.55 0.07 -10.28 16 6 N -0.67 -11.45 5.33 -9.91 -0.05 -11.50 16 7 C 0.15 3.37 6.24 -83.77 -0.52 2.85 16 8 C -0.26 -5.70 9.97 -39.10 -0.39 -6.09 16 9 C -0.09 -2.22 10.02 -39.69 -0.40 -2.61 16 10 C -0.17 -4.48 8.67 -38.84 -0.34 -4.82 16 11 C 0.12 3.31 5.56 -106.85 -0.59 2.72 16 12 C -0.46 -12.77 9.06 -37.74 -0.34 -13.11 16 13 H 0.08 2.16 7.89 -52.49 -0.41 1.75 16 14 C 0.08 1.97 5.18 -17.34 -0.09 1.88 16 15 N -0.80 -21.14 10.93 55.55 0.61 -20.53 16 16 Si 0.91 19.55 29.58 -169.99 -5.03 14.52 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 18 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 20 C -0.20 -5.29 8.38 -38.68 -0.32 -5.62 16 21 C -0.14 -1.19 9.61 -26.69 -0.26 -1.45 16 22 C 0.02 0.20 3.59 -26.69 -0.10 0.11 16 23 Cl -0.09 -1.23 27.77 -51.86 -1.44 -2.67 16 24 Cl -0.09 -1.27 27.73 -51.86 -1.44 -2.70 16 25 H 0.09 1.31 6.55 -51.93 -0.34 0.97 16 26 H 0.06 0.65 7.20 -51.93 -0.37 0.27 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.10 0.97 7.20 -51.93 -0.37 0.60 16 29 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.40 5.16 8.82 -40.82 -0.36 4.79 16 31 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 33 H 0.12 3.21 6.21 -52.49 -0.33 2.88 16 34 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 35 H 0.11 2.86 6.54 -52.49 -0.34 2.51 16 36 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -31.30 341.46 -9.83 -41.14 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -4.20 Total: 8.17 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -3.49 Total: -21.30 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.55 Total: -32.03 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Atomic # 17 Polarization: -2.49 SS G_CDS: -2.88 Total: -5.37 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.30 -9.83 -41.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837074089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.868 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds