Wall clock time and date at job start Tue Mar 31 2020 15:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 115.55005 * 2 1 4 4 C 1.50702 * 109.46769 * 295.92073 * 3 2 1 5 5 O 1.21286 * 120.00278 * 356.96110 * 4 3 2 6 6 N 1.34779 * 119.99674 * 176.95380 * 4 3 2 7 7 C 1.39930 * 119.99832 * 174.98573 * 6 4 3 8 8 C 1.39288 * 119.94564 * 144.55977 * 7 6 4 9 9 C 1.38493 * 120.43116 * 180.27333 * 8 7 6 10 10 C 1.37689 * 120.32069 * 0.02562 * 9 8 7 11 11 C 1.40741 * 119.88321 * 0.02562 * 10 9 8 12 12 C 1.41408 * 120.21035 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00027 * 206.78303 * 12 11 10 14 14 C 1.39940 * 119.99630 * 26.78232 * 12 11 10 15 15 N 1.30821 * 120.00086 * 14.88507 * 14 12 11 16 16 Si 1.86796 * 119.99702 * 194.88234 * 14 12 11 17 17 H 1.48498 * 109.47199 * 90.00021 * 16 14 12 18 18 H 1.48500 * 109.47313 * 210.00037 * 16 14 12 19 19 H 1.48503 * 109.47257 * 330.00133 * 16 14 12 20 20 C 1.38246 * 119.95197 * 324.83863 * 7 6 4 21 21 C 1.52997 * 117.49456 * 145.66548 * 2 1 3 22 22 C 1.53004 * 117.50007 * 214.32448 * 2 1 3 23 23 Cl 1.80298 * 117.49648 * 359.97438 * 22 2 1 24 24 Cl 1.80299 * 117.49595 * 144.99835 * 22 2 1 25 25 H 1.09005 * 109.46657 * 64.10083 * 1 2 3 26 26 H 1.09005 * 109.46904 * 184.09684 * 1 2 3 27 27 H 1.08994 * 109.47517 * 304.10081 * 1 2 3 28 28 H 1.08996 * 109.47173 * 175.92096 * 3 2 1 29 29 H 1.08997 * 109.46709 * 55.91929 * 3 2 1 30 30 H 0.96997 * 120.00097 * 354.99922 * 6 4 3 31 31 H 1.07998 * 119.78838 * 0.28012 * 8 7 6 32 32 H 1.08001 * 119.84405 * 180.02562 * 9 8 7 33 33 H 1.07992 * 120.05767 * 180.02562 * 10 9 8 34 34 H 0.97003 * 120.00432 * 179.97438 * 15 14 12 35 35 H 1.07999 * 120.15763 * 359.74088 * 20 7 6 36 36 H 1.09005 * 117.49936 * 214.99955 * 21 2 1 37 37 H 1.08997 * 117.50789 * 0.02642 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.8462 2.1014 -1.2779 5 8 1.1887 1.5437 -2.1309 6 7 2.2693 3.3661 -1.4728 7 6 2.0411 3.9990 -2.6998 8 6 1.7647 5.3636 -2.7374 9 6 1.5317 5.9991 -3.9457 10 6 1.5703 5.2877 -5.1240 11 6 1.8472 3.9080 -5.1014 12 6 1.8880 3.1706 -6.3073 13 1 1.6679 2.1133 -6.3014 14 6 2.2135 3.8110 -7.5082 15 7 2.7578 5.0004 -7.4887 16 14 1.8710 2.9673 -9.1392 17 1 0.5077 3.3265 -9.6056 18 1 2.8705 3.4090 -10.1447 19 1 1.9623 1.4954 -8.9640 20 6 2.0846 3.2677 -3.8722 21 6 2.2364 -1.1207 0.7655 22 6 2.2365 -1.1208 -0.7653 23 17 1.2023 -2.3409 -1.5974 24 17 3.7829 -0.7137 -1.5981 25 1 -0.3633 0.4489 -0.9245 26 1 -0.3633 -1.0251 0.0734 27 1 -0.3634 0.5761 0.8509 28 1 3.2714 1.2661 0.0731 29 1 1.8270 1.9565 0.8512 30 1 2.7323 3.8375 -0.7627 31 1 1.7320 5.9300 -1.8184 32 1 1.3187 7.0577 -3.9639 33 1 1.3883 5.7876 -6.0638 34 1 2.9838 5.4442 -8.3211 35 1 2.2985 2.2095 -3.8440 36 1 3.1713 -0.8746 1.2690 37 1 1.6112 -1.8582 1.2687 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837074089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:08 Heat of formation + Delta-G solvation = -24.162060 kcal Electronic energy + Delta-G solvation = -22905.214527 eV Core-core repulsion = 19312.942526 eV Total energy + Delta-G solvation = -3592.272002 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.33507 -39.64629 -38.58092 -36.96526 -36.69331 -36.07982 -34.77564 -31.73070 -31.33500 -29.65985 -28.66162 -27.22534 -23.53629 -23.26429 -22.72801 -21.40122 -20.19868 -19.40540 -18.03587 -17.42427 -17.22245 -16.93341 -16.51513 -16.31627 -15.77585 -15.24339 -14.89644 -14.70681 -14.34030 -14.13174 -13.89479 -13.52461 -13.28811 -13.23045 -13.02935 -12.92308 -12.80935 -12.75566 -12.54230 -12.50214 -12.19031 -12.11842 -11.93320 -11.72110 -11.51267 -11.28875 -11.12993 -10.80722 -10.58301 -10.40008 -9.36334 -8.72196 -8.57274 -6.37029 0.32300 0.91070 1.02516 1.23126 1.33884 1.46439 1.47638 1.91618 2.06517 2.20086 2.49840 2.75281 3.09870 3.38430 3.61934 3.74361 3.95188 4.13872 4.48974 4.58146 4.59408 4.62587 4.65576 4.80597 4.90469 4.95476 5.07854 5.12921 5.15228 5.29688 5.34336 5.39257 5.80176 5.89833 6.09405 6.13747 6.37863 6.70417 6.74302 6.95469 7.03177 7.46165 8.34624 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013772 B = 0.003934 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.659393 B = 7116.071259 C = 8365.747791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.076 4.076 3 C -0.103 4.103 4 C 0.500 3.500 5 O -0.547 6.547 6 N -0.663 5.663 7 C 0.161 3.839 8 C -0.248 4.248 9 C -0.094 4.094 10 C -0.196 4.196 11 C 0.088 3.912 12 C -0.503 4.503 13 H 0.058 0.942 14 C 0.039 3.961 15 N -0.825 5.825 16 Si 0.978 3.022 17 H -0.259 1.259 18 H -0.261 1.261 19 H -0.268 1.268 20 C -0.229 4.229 21 C -0.098 4.098 22 C -0.015 4.015 23 Cl -0.114 7.114 24 Cl -0.117 7.117 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.118 0.882 29 H 0.150 0.850 30 H 0.420 0.580 31 H 0.133 0.867 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.288 0.712 35 H 0.082 0.918 36 H 0.147 0.853 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.370 -7.851 19.894 21.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.077 4.077 3 C -0.142 4.142 4 C 0.289 3.711 5 O -0.423 6.423 6 N -0.310 5.310 7 C 0.068 3.932 8 C -0.269 4.269 9 C -0.113 4.113 10 C -0.216 4.216 11 C 0.085 3.915 12 C -0.533 4.533 13 H 0.076 0.924 14 C -0.175 4.175 15 N -0.452 5.452 16 Si 0.798 3.202 17 H -0.184 1.184 18 H -0.185 1.185 19 H -0.192 1.192 20 C -0.251 4.251 21 C -0.135 4.135 22 C -0.066 4.066 23 Cl -0.087 7.087 24 Cl -0.090 7.090 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.112 0.888 28 H 0.136 0.864 29 H 0.168 0.832 30 H 0.258 0.742 31 H 0.151 0.849 32 H 0.139 0.861 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.165 0.835 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.070 -8.185 19.040 20.725 hybrid contribution 0.284 -0.234 -1.346 1.396 sum 0.354 -8.419 17.694 19.598 Atomic orbital electron populations 1.21473 0.89974 1.03334 1.03097 1.22053 0.96798 0.90076 0.98798 1.21432 1.03542 0.93435 0.95785 1.21328 0.78726 0.81230 0.89848 1.90774 1.38556 1.66353 1.46661 1.43400 1.58513 1.14853 1.14235 1.17466 0.99042 0.92099 0.84599 1.20505 1.15404 0.93005 0.97983 1.20842 0.99248 0.98899 0.92307 1.21281 1.07925 0.94981 0.97441 1.17821 0.88175 0.93000 0.92460 1.19699 1.44377 0.96221 0.93028 0.92376 1.26621 0.91494 0.95344 1.04071 1.69846 1.29850 1.14676 1.30823 0.85283 0.79467 0.79072 0.76337 1.18371 1.18493 1.19200 1.20909 1.13363 0.98567 0.92220 1.24413 1.04331 0.98348 0.86452 1.27266 0.87231 0.99461 0.92665 1.98727 1.68826 1.58827 1.82312 1.98752 1.34306 1.93647 1.82284 0.93316 0.91140 0.88846 0.86398 0.83233 0.74215 0.84943 0.86074 0.88076 0.90133 0.89982 0.83499 0.83831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 8.87 71.98 0.64 -1.83 16 2 C -0.08 -1.44 1.62 -52.18 -0.08 -1.53 16 3 C -0.10 -1.87 5.04 29.85 0.15 -1.72 16 4 C 0.50 15.79 7.34 87.66 0.64 16.44 16 5 O -0.55 -23.17 12.23 -3.05 -0.04 -23.21 16 6 N -0.66 -21.30 5.33 -303.65 -1.62 -22.92 16 7 C 0.16 7.11 6.24 38.10 0.24 7.35 16 8 C -0.25 -10.27 9.97 22.58 0.23 -10.04 16 9 C -0.09 -4.32 10.02 22.20 0.22 -4.10 16 10 C -0.20 -10.73 8.67 22.75 0.20 -10.53 16 11 C 0.09 5.15 5.56 -21.31 -0.12 5.04 16 12 C -0.50 -30.00 9.06 23.46 0.21 -29.79 16 13 H 0.06 3.53 7.89 -2.91 -0.02 3.50 16 14 C 0.04 2.11 5.18 85.26 0.44 2.55 16 15 N -0.83 -45.16 10.93 21.82 0.24 -44.92 16 16 Si 0.98 41.55 29.58 68.60 2.03 43.57 16 17 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 18 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 19 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 20 C -0.23 -12.39 8.38 22.85 0.19 -12.20 16 21 C -0.10 -1.22 9.61 30.62 0.29 -0.92 16 22 C -0.02 -0.35 3.59 30.62 0.11 -0.24 16 23 Cl -0.11 -3.06 27.77 -2.72 -0.08 -3.14 16 24 Cl -0.12 -3.28 27.73 -2.72 -0.08 -3.36 16 25 H 0.05 1.42 6.55 -2.38 -0.02 1.41 16 26 H 0.07 1.31 7.20 -2.38 -0.02 1.29 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.12 1.82 7.20 -2.39 -0.02 1.80 16 29 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.42 9.34 8.82 -92.71 -0.82 8.52 16 31 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 33 H 0.10 5.76 6.21 -2.91 -0.02 5.74 16 34 H 0.29 14.15 8.30 -92.71 -0.77 13.38 16 35 H 0.08 4.74 6.54 -2.91 -0.02 4.73 16 36 H 0.15 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -75.44 341.46 4.12 -71.31 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.30 Total: 24.19 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 3.36 Total: -41.54 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -1.38 Total: -67.84 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.04 Total: -23.21 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 17 Polarization: -6.35 SS G_CDS: -0.15 Total: -6.50 kcal Total: -75.44 4.12 -71.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837074089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.152 kcal (2) G-P(sol) polarization free energy of solvation -75.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds