Wall clock time and date at job start Tue Mar 31 2020 15:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 115.55306 * 2 1 4 4 C 1.50699 * 109.47507 * 65.74219 * 3 2 1 5 5 O 1.21283 * 119.99662 * 5.46796 * 4 3 2 6 6 N 1.34776 * 119.99948 * 185.47462 * 4 3 2 7 7 C 1.39934 * 119.99834 * 175.08781 * 6 4 3 8 8 C 1.39293 * 119.94800 * 146.92065 * 7 6 4 9 9 C 1.38490 * 120.43174 * 179.97438 * 8 7 6 10 10 C 1.37680 * 120.31854 * 0.02562 * 9 8 7 11 11 C 1.40741 * 119.88684 * 0.02963 * 10 9 8 12 12 C 1.41408 * 120.20978 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99857 * 148.27654 * 12 11 10 14 14 C 1.39936 * 120.00125 * 328.27120 * 12 11 10 15 15 N 1.30828 * 119.99639 * 349.26166 * 14 12 11 16 16 Si 1.86797 * 120.00036 * 169.26347 * 14 12 11 17 17 H 1.48497 * 109.47023 * 60.00001 * 16 14 12 18 18 H 1.48500 * 109.46857 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47215 * 300.00041 * 16 14 12 20 20 C 1.38239 * 119.94894 * 326.94765 * 7 6 4 21 21 C 1.53000 * 117.49960 * 214.32115 * 2 1 3 22 22 C 1.53007 * 117.49804 * 145.66265 * 2 1 3 23 23 Cl 1.80299 * 117.50000 * 215.00302 * 22 2 1 24 24 Cl 1.80298 * 117.49927 * 0.02562 * 22 2 1 25 25 H 1.08998 * 109.47248 * 57.96735 * 1 2 3 26 26 H 1.09001 * 109.47473 * 177.96838 * 1 2 3 27 27 H 1.09001 * 109.47237 * 297.96785 * 1 2 3 28 28 H 1.09006 * 109.46501 * 305.73818 * 3 2 1 29 29 H 1.09001 * 109.46961 * 185.74880 * 3 2 1 30 30 H 0.96999 * 120.00066 * 355.07711 * 6 4 3 31 31 H 1.08005 * 119.78187 * 359.97438 * 8 7 6 32 32 H 1.07995 * 119.83643 * 180.02562 * 9 8 7 33 33 H 1.07998 * 120.05418 * 179.97438 * 10 9 8 34 34 H 0.97003 * 119.99695 * 179.97438 * 15 14 12 35 35 H 1.08001 * 120.16272 * 359.71896 * 20 7 6 36 36 H 1.08996 * 117.49837 * 359.97438 * 21 2 1 37 37 H 1.09008 * 117.49706 * 144.99470 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.8800 2.0854 1.2953 5 8 1.2832 1.5022 2.1755 6 7 2.2659 3.3641 1.4756 7 6 1.8897 4.0516 2.6349 8 6 2.7419 5.0065 3.1846 9 6 2.3795 5.6932 4.3313 10 6 1.1717 5.4387 4.9413 11 6 0.3008 4.4758 4.3981 12 6 -0.9411 4.2086 5.0193 13 1 -1.7908 3.9119 4.4223 14 6 -1.0691 4.3285 6.4076 15 7 -0.0040 4.4799 7.1520 16 14 -2.7608 4.2723 7.1979 17 1 -3.4085 2.9723 6.8888 18 1 -2.6249 4.4209 8.6692 19 1 -3.5937 5.3797 6.6638 20 6 0.6731 3.7816 3.2333 21 6 2.2364 -1.1208 -0.7652 22 6 2.2364 -1.1207 0.7656 23 17 3.7828 -0.7136 1.5984 24 17 1.2022 -2.3406 1.5980 25 1 -0.3634 0.5451 -0.8712 26 1 -0.3634 -1.0270 -0.0364 27 1 -0.3634 0.4819 0.9076 28 1 1.8050 1.9670 -0.8342 29 1 3.2691 1.2671 -0.1029 30 1 2.8045 3.8077 0.8019 31 1 3.6916 5.2127 2.7133 32 1 3.0475 6.4318 4.7490 33 1 0.8935 5.9764 5.8357 34 1 -0.0928 4.5634 8.1144 35 1 0.0097 3.0444 2.8056 36 1 1.6112 -1.8585 -1.2682 37 1 3.1713 -0.8748 -1.2688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837074091.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:11 Heat of formation + Delta-G solvation = -23.902088 kcal Electronic energy + Delta-G solvation = -22906.988999 eV Core-core repulsion = 19314.728271 eV Total energy + Delta-G solvation = -3592.260728 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34511 -39.64694 -38.57305 -36.95826 -36.68693 -36.05138 -34.75966 -31.71819 -31.34033 -29.68816 -28.65743 -27.20954 -23.54878 -23.26248 -22.73425 -21.39356 -20.18948 -19.39009 -18.03744 -17.39488 -17.28878 -16.74158 -16.54718 -16.44173 -15.73905 -15.18205 -14.89498 -14.71962 -14.36665 -14.11059 -13.89024 -13.64836 -13.34286 -13.11610 -13.08960 -12.89678 -12.82019 -12.62142 -12.52923 -12.44490 -12.23478 -12.10787 -11.95696 -11.71295 -11.54657 -11.33969 -11.12786 -10.79369 -10.55220 -10.41917 -9.30931 -8.65989 -8.55543 -6.37154 0.32412 0.91709 1.02887 1.23786 1.34986 1.47145 1.48964 1.91758 2.06302 2.22036 2.50539 2.78464 3.10133 3.38432 3.62237 3.74438 3.94209 4.12938 4.47768 4.58297 4.59715 4.62581 4.64109 4.80032 4.88524 4.94236 5.07636 5.13084 5.15925 5.28494 5.34014 5.37426 5.80508 5.88600 6.08530 6.13511 6.39370 6.71203 6.74753 6.96698 7.03590 7.46792 8.40585 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.003787 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.159556 B = 7391.975916 C = 8390.170720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.078 4.078 3 C -0.101 4.101 4 C 0.498 3.502 5 O -0.545 6.545 6 N -0.662 5.662 7 C 0.160 3.840 8 C -0.247 4.247 9 C -0.096 4.096 10 C -0.191 4.191 11 C 0.089 3.911 12 C -0.506 4.506 13 H 0.066 0.934 14 C 0.033 3.967 15 N -0.838 5.838 16 Si 0.982 3.018 17 H -0.267 1.267 18 H -0.265 1.265 19 H -0.256 1.256 20 C -0.225 4.225 21 C -0.097 4.097 22 C -0.011 4.011 23 Cl -0.114 7.114 24 Cl -0.115 7.115 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.146 0.854 29 H 0.123 0.877 30 H 0.421 0.579 31 H 0.131 0.869 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.285 0.715 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.088 -8.048 -18.977 21.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.080 4.080 3 C -0.141 4.141 4 C 0.286 3.714 5 O -0.421 6.421 6 N -0.309 5.309 7 C 0.067 3.933 8 C -0.268 4.268 9 C -0.115 4.115 10 C -0.211 4.211 11 C 0.086 3.914 12 C -0.536 4.536 13 H 0.084 0.916 14 C -0.180 4.180 15 N -0.465 5.465 16 Si 0.802 3.198 17 H -0.191 1.191 18 H -0.189 1.189 19 H -0.180 1.180 20 C -0.247 4.247 21 C -0.135 4.135 22 C -0.062 4.062 23 Cl -0.087 7.087 24 Cl -0.088 7.088 25 H 0.111 0.889 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.164 0.836 29 H 0.141 0.859 30 H 0.258 0.742 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.160 0.840 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.785 -8.558 -18.021 20.772 hybrid contribution -0.422 0.025 1.099 1.177 sum 5.363 -8.533 -16.922 19.696 Atomic orbital electron populations 1.21458 0.90322 1.03291 1.02892 1.22034 0.96570 0.90254 0.99121 1.21422 1.03964 0.93521 0.95158 1.21357 0.78616 0.81175 0.90210 1.90802 1.40532 1.65723 1.45060 1.43405 1.54268 1.12763 1.20475 1.17492 0.92835 0.94265 0.88729 1.20512 1.00651 1.04954 1.00642 1.20831 0.95958 0.99304 0.95379 1.21238 0.96884 1.00968 1.01988 1.17833 0.93413 0.89125 0.90985 1.19686 0.97043 1.43814 0.93074 0.91624 1.26681 1.02256 0.91540 0.97497 1.69861 1.31998 1.37512 1.07137 0.85273 0.77282 0.79807 0.77404 1.19128 1.18932 1.17975 1.20979 0.97087 1.04316 1.02328 1.24417 1.04318 0.98222 0.86495 1.27221 0.87217 0.99237 0.92570 1.98739 1.34018 1.93675 1.82301 1.98729 1.68917 1.58858 1.82310 0.88886 0.91132 0.93764 0.83633 0.85897 0.74151 0.85094 0.86178 0.88519 0.90447 0.89200 0.83953 0.83285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 8.95 71.98 0.64 -2.01 16 2 C -0.08 -1.52 1.59 -52.18 -0.08 -1.60 16 3 C -0.10 -1.84 5.02 29.85 0.15 -1.69 16 4 C 0.50 15.80 7.23 87.66 0.63 16.43 16 5 O -0.55 -23.51 12.22 -3.04 -0.04 -23.55 16 6 N -0.66 -21.08 5.34 -303.66 -1.62 -22.70 16 7 C 0.16 7.02 6.28 38.10 0.24 7.26 16 8 C -0.25 -10.27 9.97 22.58 0.23 -10.04 16 9 C -0.10 -4.43 10.02 22.20 0.22 -4.21 16 10 C -0.19 -10.43 8.64 22.75 0.20 -10.23 16 11 C 0.09 5.16 5.51 -21.31 -0.12 5.04 16 12 C -0.51 -29.72 9.04 23.46 0.21 -29.51 16 13 H 0.07 3.79 7.87 -2.91 -0.02 3.76 16 14 C 0.03 1.81 5.23 85.25 0.45 2.25 16 15 N -0.84 -47.23 11.05 21.82 0.24 -46.99 16 16 Si 0.98 41.54 29.57 68.60 2.03 43.57 16 17 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 18 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 19 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 20 C -0.23 -11.99 8.39 22.85 0.19 -11.80 16 21 C -0.10 -1.19 9.61 30.62 0.29 -0.89 16 22 C -0.01 -0.26 3.48 30.62 0.11 -0.15 16 23 Cl -0.11 -3.03 27.67 -2.72 -0.08 -3.10 16 24 Cl -0.12 -3.11 27.72 -2.72 -0.08 -3.19 16 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.41 7.12 -2.39 -0.02 1.39 16 27 H 0.04 1.37 6.74 -2.39 -0.02 1.35 16 28 H 0.15 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.12 1.72 7.28 -2.39 -0.02 1.70 16 30 H 0.42 9.14 8.82 -92.71 -0.82 8.32 16 31 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 32 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 33 H 0.10 5.53 6.45 -2.91 -0.02 5.51 16 34 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 35 H 0.09 5.00 6.38 -2.91 -0.02 4.98 16 36 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.15 0.99 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -76.06 341.48 4.12 -71.94 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.30 Total: 25.17 kcal Atomic # 6 Polarization: -44.51 SS G_CDS: 3.36 Total: -41.15 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -1.38 Total: -69.69 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.04 Total: -23.55 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 17 Polarization: -6.14 SS G_CDS: -0.15 Total: -6.29 kcal Total: -76.06 4.12 -71.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837074091.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.035 kcal (2) G-P(sol) polarization free energy of solvation -76.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds