Wall clock time and date at job start Tue Mar 31 2020 15:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 115.54713 * 2 1 4 4 C 1.50692 * 109.47462 * 280.33406 * 3 2 1 5 5 O 1.21288 * 119.99825 * 5.50100 * 4 3 2 6 6 N 1.34777 * 120.00142 * 185.49507 * 4 3 2 7 7 C 1.37138 * 119.99939 * 355.16438 * 6 4 3 8 8 H 1.07998 * 119.99731 * 344.78609 * 7 6 4 9 9 C 1.38887 * 120.00091 * 164.79230 * 7 6 4 10 10 N 1.31422 * 120.00059 * 356.58994 * 9 7 6 11 11 Si 1.86802 * 120.00080 * 176.59035 * 9 7 6 12 12 H 1.48501 * 109.47279 * 89.99959 * 11 9 7 13 13 H 1.48497 * 109.47144 * 210.00068 * 11 9 7 14 14 H 1.48495 * 109.46918 * 329.99904 * 11 9 7 15 15 C 1.39792 * 119.99951 * 175.15946 * 6 4 3 16 16 C 1.38956 * 120.07545 * 98.21017 * 15 6 4 17 17 C 1.38085 * 119.92096 * 179.79034 * 16 15 6 18 18 C 1.38312 * 120.07253 * 0.46357 * 17 16 15 19 19 C 1.38301 * 120.16043 * 359.78612 * 18 17 16 20 20 C 1.38083 * 120.07965 * 359.97438 * 19 18 17 21 21 C 1.53070 * 117.51852 * 145.72510 * 2 1 3 22 22 C 1.52998 * 117.49998 * 214.33717 * 2 1 3 23 23 Cl 1.80303 * 117.49813 * 359.97438 * 22 2 1 24 24 Cl 1.80298 * 117.50272 * 144.99186 * 22 2 1 25 25 H 1.09008 * 109.46637 * 200.68032 * 1 2 3 26 26 H 1.09000 * 109.46711 * 320.67112 * 1 2 3 27 27 H 1.08989 * 109.47412 * 80.67981 * 1 2 3 28 28 H 1.09005 * 109.46953 * 40.33947 * 3 2 1 29 29 H 1.09002 * 109.46684 * 160.33304 * 3 2 1 30 30 H 0.97000 * 120.00449 * 185.00649 * 10 9 7 31 31 H 1.08003 * 120.04291 * 0.02562 * 16 15 6 32 32 H 1.07993 * 119.96624 * 180.22903 * 17 16 15 33 33 H 1.08004 * 119.91776 * 179.77166 * 18 17 16 34 34 H 1.08000 * 119.96511 * 179.97438 * 19 18 17 35 35 H 1.07996 * 120.04464 * 179.97438 * 20 19 18 36 36 H 1.09001 * 117.51043 * 0.02562 * 21 2 1 37 37 H 1.08996 * 117.49764 * 214.96152 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.1766 1.9436 -1.3977 5 8 1.6003 1.3506 -2.2850 6 7 2.8049 3.1064 -1.6617 7 6 3.3711 3.8269 -0.6414 8 1 3.1123 3.6065 0.3836 9 6 4.2773 4.8401 -0.9264 10 7 4.6433 5.0641 -2.1686 11 14 4.9760 5.8843 0.4559 12 1 6.2194 5.2564 0.9708 13 1 5.2837 7.2434 -0.0574 14 1 3.9804 5.9833 1.5532 15 6 2.8795 3.5779 -2.9756 16 6 1.9803 4.5381 -3.4230 17 6 2.0596 5.0048 -4.7202 18 6 3.0266 4.5104 -5.5766 19 6 3.9200 3.5509 -5.1363 20 6 3.8496 3.0833 -3.8389 21 6 2.2372 -1.1218 0.7645 22 6 2.2365 -1.1206 -0.7655 23 17 1.2022 -2.3406 -1.5980 24 17 3.7828 -0.7135 -1.5985 25 1 -0.3633 -0.9615 0.3630 26 1 -0.3633 0.7949 0.6513 27 1 -0.3633 0.1664 -1.0140 28 1 1.6398 2.0461 0.6653 29 1 3.2196 1.2908 0.3459 30 1 5.3297 5.7220 -2.3609 31 1 1.2226 4.9219 -2.7558 32 1 1.3635 5.7538 -5.0675 33 1 3.0841 4.8745 -6.5918 34 1 4.6735 3.1667 -5.8079 35 1 4.5472 2.3336 -3.4958 36 1 1.6125 -1.8601 1.2672 37 1 3.1725 -0.8761 1.2675 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839267422.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:15 Heat of formation + Delta-G solvation = 18.625422 kcal Electronic energy + Delta-G solvation = -23960.662331 eV Core-core repulsion = 20370.245734 eV Total energy + Delta-G solvation = -3590.416597 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.56499 -38.31735 -36.83155 -35.60919 -35.33036 -34.60887 -31.61734 -29.83804 -29.76914 -28.53082 -27.36445 -24.89722 -22.10769 -21.84877 -21.42507 -19.60127 -18.81451 -17.51918 -16.19268 -15.98623 -15.42887 -15.06790 -14.54933 -14.39614 -14.31207 -13.55378 -13.35696 -13.11749 -12.71439 -12.61980 -12.33373 -12.08471 -11.87950 -11.68966 -11.46315 -11.32621 -11.25179 -11.22001 -11.02562 -10.84088 -10.70432 -10.51399 -10.40138 -10.29440 -10.18987 -9.90475 -9.40524 -9.24893 -8.50296 -8.02531 -7.75502 -7.57668 -6.12840 -4.02881 1.59207 2.57154 2.60223 2.63044 3.07065 3.15854 3.18381 3.43122 3.80244 4.02130 4.39257 4.43277 4.79096 4.96488 5.11111 5.16710 5.20567 5.54760 5.74651 5.88533 5.93402 5.98224 6.00763 6.08493 6.16132 6.18213 6.31797 6.50783 6.52257 6.65871 6.93672 7.16259 7.29645 7.44538 7.56377 7.68431 7.87363 8.05563 8.48036 9.01173 9.39739 9.83047 10.63427 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013285 B = 0.005426 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.136989 B = 5159.475585 C = 6187.136192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.062 4.062 3 C -0.092 4.092 4 C 0.475 3.525 5 O -0.577 6.577 6 N -0.421 5.421 7 C -0.345 4.345 8 H 0.101 0.899 9 C 0.041 3.959 10 N -0.852 5.852 11 Si 0.921 3.079 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.270 1.270 15 C 0.259 3.741 16 C -0.120 4.120 17 C -0.120 4.120 18 C -0.149 4.149 19 C -0.121 4.121 20 C -0.071 4.071 21 C -0.153 4.153 22 C 0.028 3.972 23 Cl -0.108 7.108 24 Cl -0.086 7.086 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.271 0.729 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.319 -7.086 4.421 8.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.063 4.063 3 C -0.132 4.132 4 C 0.264 3.736 5 O -0.460 6.460 6 N -0.138 5.138 7 C -0.472 4.472 8 H 0.118 0.882 9 C -0.166 4.166 10 N -0.489 5.489 11 Si 0.747 3.253 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.195 1.195 15 C 0.168 3.832 16 C -0.140 4.140 17 C -0.139 4.139 18 C -0.167 4.167 19 C -0.140 4.140 20 C -0.091 4.091 21 C -0.190 4.190 22 C -0.024 4.024 23 Cl -0.081 7.081 24 Cl -0.059 7.059 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.134 0.866 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.460 -7.244 3.741 8.857 hybrid contribution 0.870 0.748 0.605 1.297 sum -2.590 -6.495 4.345 8.233 Atomic orbital electron populations 1.21400 0.90314 1.01595 1.03864 1.22033 0.96295 0.90760 0.97253 1.21133 1.01927 0.92455 0.97710 1.19753 0.82921 0.81093 0.89791 1.90612 1.47509 1.60371 1.47543 1.41294 1.49290 1.18335 1.04910 1.19616 1.24638 1.15115 0.87783 0.88168 1.25289 0.96588 0.97637 0.97081 1.69901 1.28610 1.33333 1.17010 0.86016 0.79327 0.79365 0.80562 1.20332 1.20782 1.19470 1.16942 0.91472 0.91218 0.83533 1.20888 0.99436 0.98376 0.95339 1.20602 0.99025 1.00269 0.94001 1.20654 0.97797 0.99724 0.98571 1.20615 0.99197 0.98575 0.95628 1.20724 0.96326 0.99034 0.92975 1.24275 1.03842 1.01023 0.89891 1.26624 0.88029 0.97716 0.90015 1.98702 1.68860 1.58604 1.81887 1.98752 1.32213 1.93416 1.81487 0.92407 0.91554 0.90133 0.88741 0.88885 0.91733 0.87978 0.87975 0.88106 0.88008 0.88290 0.86648 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 8.75 37.16 0.32 -1.26 16 2 C -0.06 -0.93 1.59 -154.47 -0.25 -1.18 16 3 C -0.09 -1.62 3.50 -27.88 -0.10 -1.71 16 4 C 0.48 10.50 6.37 -10.99 -0.07 10.43 16 5 O -0.58 -13.91 14.60 5.55 0.08 -13.83 16 6 N -0.42 -10.11 2.66 -58.98 -0.16 -10.27 16 7 C -0.35 -8.24 9.18 -14.94 -0.14 -8.37 16 8 H 0.10 2.19 6.55 -52.49 -0.34 1.85 16 9 C 0.04 0.98 5.40 -17.49 -0.09 0.88 16 10 N -0.85 -21.69 9.75 55.49 0.54 -21.15 16 11 Si 0.92 18.90 29.56 -169.99 -5.02 13.88 16 12 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 13 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 14 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 15 C 0.26 6.37 2.23 -83.69 -0.19 6.19 16 16 C -0.12 -2.82 9.73 -39.37 -0.38 -3.21 16 17 C -0.12 -2.51 10.04 -39.61 -0.40 -2.90 16 18 C -0.15 -2.99 10.04 -39.53 -0.40 -3.39 16 19 C -0.12 -2.58 10.04 -39.62 -0.40 -2.98 16 20 C -0.07 -1.70 8.64 -39.37 -0.34 -2.04 16 21 C -0.15 -1.86 9.51 -26.69 -0.25 -2.11 16 22 C 0.03 0.44 3.04 -26.73 -0.08 0.35 16 23 Cl -0.11 -1.65 28.23 -51.86 -1.46 -3.11 16 24 Cl -0.09 -1.55 26.71 -51.86 -1.38 -2.94 16 25 H 0.06 0.67 7.82 -51.92 -0.41 0.27 16 26 H 0.07 0.82 8.07 -51.93 -0.42 0.40 16 27 H 0.08 1.31 7.79 -51.94 -0.40 0.90 16 28 H 0.09 1.52 7.73 -51.93 -0.40 1.11 16 29 H 0.09 1.61 7.66 -51.93 -0.40 1.21 16 30 H 0.27 6.72 8.32 -40.82 -0.34 6.38 16 31 H 0.10 2.35 8.06 -52.48 -0.42 1.93 16 32 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 34 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.10 2.44 8.06 -52.49 -0.42 2.02 16 36 H 0.12 1.14 8.08 -51.93 -0.42 0.72 16 37 H 0.12 1.29 8.09 -51.93 -0.42 0.87 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -28.09 341.27 -9.48 -37.57 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -4.46 Total: 6.01 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -2.76 Total: -11.30 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.38 Total: -31.42 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.08 Total: -13.83 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Atomic # 17 Polarization: -3.20 SS G_CDS: -2.85 Total: -6.05 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.09 -9.48 -37.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839267422.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.195 kcal (2) G-P(sol) polarization free energy of solvation -28.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds