Wall clock time and date at job start Tue Mar 31 2020 14:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99772 * 2 1 4 4 H 1.48501 * 109.47033 * 239.99605 * 3 2 1 5 5 H 1.48501 * 109.47466 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47176 * 119.99986 * 3 2 1 7 7 C 1.37875 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99880 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.64054 * 59.30146 * 9 7 2 11 11 C 1.55158 * 110.72071 * 182.43864 * 9 7 2 12 12 C 1.55393 * 101.36604 * 153.94900 * 11 9 7 13 13 N 1.47433 * 104.87396 * 323.02138 * 12 11 9 14 14 C 1.34770 * 125.64428 * 204.16622 * 13 12 11 15 15 O 1.21806 * 119.99617 * 179.97438 * 14 13 12 16 16 C 1.41379 * 120.00766 * 359.95944 * 14 13 12 17 17 C 1.35741 * 120.00530 * 180.02562 * 16 14 13 18 18 C 1.41454 * 119.99856 * 180.02562 * 17 16 14 19 19 C 1.37086 * 125.46152 * 179.97438 * 18 17 16 20 20 C 1.37360 * 113.24250 * 179.97438 * 19 18 17 21 21 C 1.34068 * 115.09755 * 359.97438 * 20 19 18 22 22 Cl 1.73598 * 124.50193 * 180.02562 * 21 20 19 23 23 S 1.70606 * 110.99560 * 359.76404 * 21 20 19 24 24 C 1.47023 * 108.70199 * 24.13006 * 13 12 11 25 25 H 0.97000 * 119.99972 * 0.02562 * 1 2 3 26 26 H 0.96696 * 114.00036 * 300.69922 * 10 9 7 27 27 H 1.09003 * 111.00778 * 272.12092 * 11 9 7 28 28 H 1.08998 * 110.99967 * 35.97524 * 11 9 7 29 29 H 1.08994 * 110.34653 * 204.17011 * 12 11 9 30 30 H 1.09005 * 110.44158 * 81.91997 * 12 11 9 31 31 H 1.08002 * 119.99546 * 359.97438 * 16 14 13 32 32 H 1.08002 * 119.99923 * 359.97438 * 17 16 14 33 33 H 1.08004 * 123.38112 * 359.93837 * 19 18 17 34 34 H 1.08004 * 122.45413 * 180.02562 * 20 19 18 35 35 H 1.09001 * 109.87979 * 239.52809 * 24 13 12 36 36 H 1.08999 * 110.00722 * 118.42930 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.4075 -2.5948 -1.1478 11 6 2.2323 -3.6994 0.0639 12 6 1.3425 -4.7884 0.7250 13 7 0.5237 -4.0605 1.7116 14 6 -0.0421 -4.5964 2.8111 15 8 -0.7007 -3.8967 3.5596 16 6 0.1284 -5.9707 3.0956 17 6 -0.4419 -6.5106 4.2028 18 6 -0.2708 -7.8855 4.4876 19 6 -0.7938 -8.5446 5.5698 20 6 -0.4706 -9.8793 5.5998 21 6 0.2897 -10.3033 4.5802 22 17 0.8385 -11.9376 4.3760 23 16 0.6400 -9.0250 3.5061 24 6 0.4274 -2.6530 1.2976 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2495 -1.8883 -1.2134 27 1 2.5456 -4.0002 -0.9359 28 1 3.0947 -3.4670 0.6886 29 1 1.9627 -5.5337 1.2228 30 1 0.7048 -5.2633 -0.0207 31 1 0.7118 -6.5912 2.4315 32 1 -1.0257 -5.8901 4.8666 33 1 -1.3989 -8.0628 6.3236 34 1 -0.8051 -10.5392 6.3867 35 1 0.8370 -2.0089 2.0758 36 1 -0.6134 -2.3902 1.1088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844013916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:00 Heat of formation + Delta-G solvation = -37.978947 kcal Electronic energy + Delta-G solvation = -22234.790252 eV Core-core repulsion = 18643.962812 eV Total energy + Delta-G solvation = -3590.827440 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.66779 -38.51375 -37.40832 -36.97032 -34.31679 -33.97321 -32.21131 -30.28655 -29.03037 -27.78332 -25.82076 -24.61423 -23.03608 -21.66663 -20.18939 -19.63176 -18.55591 -17.67474 -17.19216 -16.84081 -15.91674 -15.53854 -14.97343 -14.82835 -14.36236 -14.27024 -13.97421 -13.54844 -13.22568 -13.00182 -12.95320 -12.80978 -12.47421 -12.27633 -12.02867 -11.67292 -11.48955 -11.40305 -11.05945 -11.03423 -10.82862 -10.68912 -10.53050 -10.34143 -10.18165 -9.51129 -9.35130 -8.99586 -8.68494 -8.34376 -8.31924 -7.84200 -6.30148 -4.38855 -0.16914 0.73824 1.44322 1.50634 1.83450 2.46581 3.21693 3.27488 3.29246 3.66781 3.74578 4.25899 4.60130 4.83810 4.94716 4.97230 5.02009 5.29033 5.36090 5.44004 5.67769 5.69485 5.78147 5.81256 5.98917 6.00098 6.17308 6.29993 6.47104 6.73500 6.83186 6.95651 7.24827 7.35803 7.71713 7.98448 8.17955 8.62237 8.68918 9.28846 9.38424 10.77681 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.030253 B = 0.002392 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.306894 B =11701.081985 C =12201.944522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.117 4.117 12 C 0.098 3.902 13 N -0.604 5.604 14 C 0.550 3.450 15 O -0.557 6.557 16 C -0.188 4.188 17 C -0.007 4.007 18 C -0.173 4.173 19 C -0.104 4.104 20 C -0.125 4.125 21 C -0.188 4.188 22 Cl -0.016 7.016 23 S 0.243 5.757 24 C 0.102 3.898 25 H 0.271 0.729 26 H 0.384 0.616 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.151 0.849 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.067 0.933 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.542 -20.048 8.112 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.084 0.916 9 C 0.207 3.793 10 O -0.395 6.395 11 C -0.155 4.155 12 C -0.025 4.025 13 N -0.335 5.335 14 C 0.341 3.659 15 O -0.439 6.439 16 C -0.212 4.212 17 C -0.029 4.029 18 C -0.291 4.291 19 C -0.134 4.134 20 C -0.157 4.157 21 C -0.334 4.334 22 Cl 0.012 6.988 23 S 0.510 5.490 24 C -0.020 4.020 25 H 0.081 0.919 26 H 0.235 0.765 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.169 0.831 33 H 0.174 0.826 34 H 0.167 0.833 35 H 0.086 0.914 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.257 -20.201 7.065 21.438 hybrid contribution -0.672 0.957 1.480 1.886 sum 0.585 -19.243 8.545 21.063 Atomic orbital electron populations 1.69631 1.06009 1.28091 1.49661 1.25074 0.95059 0.99787 0.93352 0.86451 0.79536 0.82053 0.78810 1.19980 1.21063 1.20022 1.21474 0.93660 0.90124 1.52427 0.91561 1.19492 0.86201 0.92118 0.81468 1.86087 1.51697 1.54977 1.46728 1.22837 0.97481 0.94916 1.00276 1.22464 0.93447 0.95453 0.91112 1.48746 1.49475 1.12735 1.22577 1.16486 0.80653 0.87702 0.81019 1.90820 1.41367 1.63280 1.48413 1.22242 1.03501 0.96353 0.99106 1.20670 0.95639 0.90361 0.96226 1.22756 1.07157 0.98156 1.01004 1.20784 1.01359 0.92960 0.98337 1.20009 0.99981 0.96409 0.99341 1.24938 1.10182 0.93445 1.04802 1.98374 1.88230 1.15326 1.96829 1.83378 1.48176 0.94856 1.22574 1.23035 1.01833 0.77966 0.99173 0.91877 0.76465 0.90371 0.90434 0.91980 0.91479 0.86095 0.83132 0.82571 0.83346 0.91421 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.64 10.96 55.43 0.61 -23.04 16 2 C 0.07 1.82 5.27 -17.82 -0.09 1.73 16 3 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -13.89 8.11 -34.44 -0.28 -14.17 16 8 H 0.07 1.67 7.77 -52.49 -0.41 1.26 16 9 C 0.25 5.89 0.85 -89.94 -0.08 5.81 16 10 O -0.59 -14.52 13.07 -35.23 -0.46 -14.98 16 11 C -0.12 -2.26 6.26 -24.32 -0.15 -2.42 16 12 C 0.10 1.67 6.49 -2.26 -0.01 1.66 16 13 N -0.60 -12.24 3.33 -173.68 -0.58 -12.82 16 14 C 0.55 10.70 7.60 -15.07 -0.11 10.58 16 15 O -0.56 -12.71 16.43 5.09 0.08 -12.62 16 16 C -0.19 -2.74 8.80 -39.28 -0.35 -3.09 16 17 C -0.01 -0.09 9.36 -39.25 -0.37 -0.46 16 18 C -0.17 -1.81 6.20 -38.78 -0.24 -2.05 16 19 C -0.10 -0.91 10.25 -40.32 -0.41 -1.33 16 20 C -0.12 -1.05 10.08 -41.37 -0.42 -1.46 16 21 C -0.19 -1.73 6.82 29.26 0.20 -1.53 16 22 Cl -0.02 -0.14 29.27 -51.86 -1.52 -1.65 16 23 S 0.24 2.31 21.75 -107.50 -2.34 -0.03 16 24 C 0.10 2.43 5.38 -3.06 -0.02 2.42 16 25 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.38 9.82 7.23 45.56 0.33 10.15 16 27 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 29 H 0.06 0.84 7.11 -51.93 -0.37 0.47 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.12 1.49 5.71 -52.49 -0.30 1.19 16 32 H 0.15 1.93 7.46 -52.49 -0.39 1.54 16 33 H 0.16 1.05 8.06 -52.48 -0.42 0.63 16 34 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.07 1.77 7.82 -51.93 -0.41 1.36 16 36 H 0.07 1.75 7.99 -51.93 -0.42 1.33 16 LS Contribution 336.97 15.07 5.08 5.08 Total: -1.00 -29.11 336.97 -9.68 -38.79 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -3.20 Total: 10.30 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.33 Total: -4.30 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.03 Total: -35.86 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.38 Total: -27.61 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.34 Total: -0.03 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.52 Total: -1.65 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.11 -9.68 -38.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844013916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.812 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds