Wall clock time and date at job start Tue Mar 31 2020 14:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99772 * 2 1 4 4 H 1.48501 * 109.47033 * 239.99605 * 3 2 1 5 5 H 1.48501 * 109.47466 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47176 * 119.99986 * 3 2 1 7 7 C 1.37875 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99880 * 359.97438 * 7 2 1 10 10 O 1.42905 * 110.64054 * 59.30146 * 9 7 2 11 11 C 1.55158 * 110.72071 * 182.43864 * 9 7 2 12 12 C 1.55393 * 101.36604 * 153.94900 * 11 9 7 13 13 N 1.47433 * 104.87396 * 323.02138 * 12 11 9 14 14 C 1.34770 * 125.64428 * 204.16622 * 13 12 11 15 15 O 1.21806 * 119.99617 * 179.97438 * 14 13 12 16 16 C 1.41379 * 120.00766 * 359.95944 * 14 13 12 17 17 C 1.35741 * 120.00530 * 180.02562 * 16 14 13 18 18 C 1.41454 * 119.99856 * 180.02562 * 17 16 14 19 19 C 1.37086 * 125.46152 * 179.97438 * 18 17 16 20 20 C 1.37360 * 113.24250 * 179.97438 * 19 18 17 21 21 C 1.34068 * 115.09755 * 359.97438 * 20 19 18 22 22 Cl 1.73598 * 124.50193 * 180.02562 * 21 20 19 23 23 S 1.70606 * 110.99560 * 359.76404 * 21 20 19 24 24 C 1.47023 * 108.70199 * 24.13006 * 13 12 11 25 25 H 0.97000 * 119.99972 * 0.02562 * 1 2 3 26 26 H 0.96696 * 114.00036 * 300.69922 * 10 9 7 27 27 H 1.09003 * 111.00778 * 272.12092 * 11 9 7 28 28 H 1.08998 * 110.99967 * 35.97524 * 11 9 7 29 29 H 1.08994 * 110.34653 * 204.17011 * 12 11 9 30 30 H 1.09005 * 110.44158 * 81.91997 * 12 11 9 31 31 H 1.08002 * 119.99546 * 359.97438 * 16 14 13 32 32 H 1.08002 * 119.99923 * 359.97438 * 17 16 14 33 33 H 1.08004 * 123.38112 * 359.93837 * 19 18 17 34 34 H 1.08004 * 122.45413 * 180.02562 * 20 19 18 35 35 H 1.09001 * 109.87979 * 239.52809 * 24 13 12 36 36 H 1.08999 * 110.00722 * 118.42930 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 8 0.4075 -2.5948 -1.1478 11 6 2.2323 -3.6994 0.0639 12 6 1.3425 -4.7884 0.7250 13 7 0.5237 -4.0605 1.7116 14 6 -0.0421 -4.5964 2.8111 15 8 -0.7007 -3.8967 3.5596 16 6 0.1284 -5.9707 3.0956 17 6 -0.4419 -6.5106 4.2028 18 6 -0.2708 -7.8855 4.4876 19 6 -0.7938 -8.5446 5.5698 20 6 -0.4706 -9.8793 5.5998 21 6 0.2897 -10.3033 4.5802 22 17 0.8385 -11.9376 4.3760 23 16 0.6400 -9.0250 3.5061 24 6 0.4274 -2.6530 1.2976 25 1 -0.4850 0.8400 -0.0004 26 1 -0.2495 -1.8883 -1.2134 27 1 2.5456 -4.0002 -0.9359 28 1 3.0947 -3.4670 0.6886 29 1 1.9627 -5.5337 1.2228 30 1 0.7048 -5.2633 -0.0207 31 1 0.7118 -6.5912 2.4315 32 1 -1.0257 -5.8901 4.8666 33 1 -1.3989 -8.0628 6.3236 34 1 -0.8051 -10.5392 6.3867 35 1 0.8370 -2.0089 2.0758 36 1 -0.6134 -2.3902 1.1088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844013916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:59 Heat of formation + Delta-G solvation = -56.409557 kcal Electronic energy + Delta-G solvation = -22235.589463 eV Core-core repulsion = 18643.962812 eV Total energy + Delta-G solvation = -3591.626652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.19365 -39.37541 -38.95275 -37.72838 -36.08859 -35.01530 -34.20259 -31.88782 -30.18050 -29.35748 -27.33453 -25.82108 -24.40865 -22.84908 -21.42399 -20.97439 -19.87528 -19.15821 -18.58221 -18.06402 -17.27170 -16.87712 -16.59946 -16.39418 -15.95450 -15.07885 -15.01450 -14.80227 -14.70388 -14.62330 -14.24427 -14.01676 -13.60838 -13.47881 -13.33819 -13.15969 -12.99439 -12.83358 -12.52487 -12.32722 -12.30972 -12.17568 -12.07812 -11.76222 -11.23339 -11.17923 -11.08531 -10.63986 -10.28706 -9.69374 -9.64033 -9.07187 -8.26771 -6.42697 -1.04562 0.00576 0.58618 0.71809 1.12230 1.42610 1.43014 1.51179 1.63640 2.16800 2.38131 2.40238 2.99687 3.58692 3.79916 3.97552 4.03649 4.10477 4.17976 4.28144 4.32677 4.44194 4.62737 4.70329 4.76346 4.87579 5.02147 5.04792 5.12362 5.13851 5.29402 5.31182 5.39692 5.53680 5.74771 6.04900 6.61742 6.68732 7.15920 7.28207 7.35886 8.79242 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.030253 B = 0.002392 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.306894 B =11701.081985 C =12201.944522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.558 4.558 8 H 0.068 0.932 9 C 0.232 3.768 10 O -0.588 6.588 11 C -0.112 4.112 12 C 0.103 3.897 13 N -0.613 5.613 14 C 0.549 3.451 15 O -0.606 6.606 16 C -0.225 4.225 17 C 0.036 3.964 18 C -0.210 4.210 19 C -0.077 4.077 20 C -0.130 4.130 21 C -0.187 4.187 22 Cl -0.008 7.008 23 S 0.254 5.746 24 C 0.119 3.881 25 H 0.270 0.730 26 H 0.376 0.624 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.179 0.821 34 H 0.172 0.828 35 H 0.033 0.967 36 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 -22.759 8.990 24.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.596 4.596 8 H 0.086 0.914 9 C 0.191 3.809 10 O -0.396 6.396 11 C -0.150 4.150 12 C -0.019 4.019 13 N -0.344 5.344 14 C 0.344 3.656 15 O -0.492 6.492 16 C -0.248 4.248 17 C 0.014 3.986 18 C -0.328 4.328 19 C -0.109 4.109 20 C -0.162 4.162 21 C -0.333 4.333 22 Cl 0.020 6.980 23 S 0.522 5.478 24 C -0.004 4.004 25 H 0.080 0.920 26 H 0.226 0.774 27 H 0.111 0.889 28 H 0.103 0.897 29 H 0.124 0.876 30 H 0.094 0.906 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.196 0.804 34 H 0.190 0.810 35 H 0.051 0.949 36 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.283 -22.948 7.915 24.382 hybrid contribution -1.040 1.577 1.362 2.329 sum 1.243 -21.371 9.278 23.331 Atomic orbital electron populations 1.69747 1.07136 1.28558 1.50210 1.25832 0.95815 1.02871 0.93117 0.85520 0.78345 0.78355 0.78900 1.19205 1.20984 1.19807 1.21833 0.93982 0.91407 1.52408 0.91393 1.19724 0.86745 0.93651 0.80735 1.86076 1.51654 1.54570 1.47328 1.22838 0.96968 0.93558 1.01606 1.22615 0.93252 0.95160 0.90845 1.48781 1.50564 1.11354 1.23713 1.17226 0.79227 0.89348 0.79827 1.90780 1.43624 1.64873 1.49919 1.21900 1.07608 0.93682 1.01586 1.20713 0.92328 0.91234 0.94316 1.22651 1.09900 0.97462 1.02823 1.21153 0.99270 0.93001 0.97428 1.20285 0.99656 0.96520 0.99741 1.25206 1.09541 0.93787 1.04723 1.98387 1.88097 1.14704 1.96786 1.83350 1.47620 0.94547 1.22263 1.22507 0.99276 0.80138 0.98494 0.92039 0.77391 0.88948 0.89723 0.87561 0.90650 0.83758 0.83824 0.80386 0.81047 0.94861 0.95144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.35 10.96 21.45 0.23 -50.11 16 2 C 0.02 1.29 5.27 84.65 0.45 1.73 16 3 Si 0.96 42.21 29.54 68.60 2.03 44.23 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.56 -29.35 8.11 25.60 0.21 -29.15 16 8 H 0.07 3.45 7.77 -2.91 -0.02 3.43 16 9 C 0.23 11.27 0.85 -10.35 -0.01 11.26 16 10 O -0.59 -29.92 13.07 -148.98 -1.95 -31.86 16 11 C -0.11 -4.22 6.26 32.16 0.20 -4.02 16 12 C 0.10 3.35 6.49 87.02 0.56 3.92 16 13 N -0.61 -25.30 3.33 -821.59 -2.73 -28.03 16 14 C 0.55 21.79 7.60 85.02 0.65 22.44 16 15 O -0.61 -28.97 16.43 -4.69 -0.08 -29.05 16 16 C -0.22 -6.32 8.80 22.46 0.20 -6.13 16 17 C 0.04 0.86 9.36 22.48 0.21 1.07 16 18 C -0.21 -3.87 6.20 22.79 0.14 -3.73 16 19 C -0.08 -1.09 10.25 21.79 0.22 -0.86 16 20 C -0.13 -1.69 10.08 21.11 0.21 -1.47 16 21 C -0.19 -2.83 6.82 66.87 0.46 -2.37 16 22 Cl -0.01 -0.12 29.27 -2.72 -0.08 -0.20 16 23 S 0.25 4.12 21.75 -56.49 -1.23 2.89 16 24 C 0.12 6.02 5.38 86.73 0.47 6.48 16 25 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 26 H 0.38 20.13 7.23 -74.06 -0.54 19.59 16 27 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 28 H 0.08 3.04 8.04 -2.39 -0.02 3.02 16 29 H 0.11 2.55 7.11 -2.39 -0.02 2.53 16 30 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.14 3.25 5.71 -2.91 -0.02 3.23 16 32 H 0.14 3.59 7.46 -2.91 -0.02 3.57 16 33 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.03 1.85 7.82 -2.39 -0.02 1.83 16 36 H 0.03 1.71 7.99 -2.39 -0.02 1.69 16 Total: -1.00 -66.03 336.97 0.75 -65.27 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.59 Total: 27.68 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 3.97 Total: -0.83 kcal Atomic # 7 Polarization: -75.64 SS G_CDS: -2.50 Total: -78.14 kcal Atomic # 8 Polarization: -58.89 SS G_CDS: -2.02 Total: -60.91 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.23 Total: 2.89 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.08 Total: -0.20 kcal Total: -66.03 0.75 -65.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844013916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.864 kcal (2) G-P(sol) polarization free energy of solvation -66.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds