Wall clock time and date at job start Tue Mar 31 2020 14:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99749 * 2 1 4 4 H 1.48495 * 109.46952 * 269.99770 * 3 2 1 5 5 H 1.48497 * 109.47369 * 30.00191 * 3 2 1 6 6 H 1.48503 * 109.47086 * 150.00082 * 3 2 1 7 7 C 1.37879 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00084 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99692 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.64030 * 300.69919 * 9 7 2 11 11 C 1.55153 * 110.71878 * 177.55961 * 9 7 2 12 12 C 1.54909 * 101.58208 * 205.95757 * 11 9 7 13 13 N 1.47420 * 104.83563 * 37.00646 * 12 11 9 14 14 C 1.34775 * 125.65236 * 155.82162 * 13 12 11 15 15 O 1.21802 * 120.00401 * 180.02562 * 14 13 12 16 16 C 1.41382 * 119.99826 * 0.03313 * 14 13 12 17 17 C 1.35745 * 119.99871 * 186.73809 * 16 14 13 18 18 C 1.41446 * 120.00118 * 11.85941 * 17 16 14 19 19 C 1.37093 * 125.46012 * 225.64022 * 18 17 16 20 20 C 1.37374 * 113.23892 * 179.86142 * 19 18 17 21 21 C 1.34066 * 115.09333 * 0.42752 * 20 19 18 22 22 Cl 1.73607 * 124.49670 * 179.78491 * 21 20 19 23 23 S 1.70597 * 111.00175 * 359.76092 * 21 20 19 24 24 C 1.47030 * 108.70128 * 335.87732 * 13 12 11 25 25 H 0.96999 * 120.00075 * 359.97438 * 1 2 3 26 26 H 0.96697 * 114.00069 * 56.86592 * 10 9 7 27 27 H 1.09003 * 111.00408 * 324.03157 * 11 9 7 28 28 H 1.09005 * 111.00605 * 87.84594 * 11 9 7 29 29 H 1.09000 * 110.36898 * 155.84972 * 12 11 9 30 30 H 1.09004 * 110.36608 * 278.06175 * 12 11 9 31 31 H 1.08003 * 120.00168 * 6.74013 * 16 14 13 32 32 H 1.08002 * 119.99875 * 191.86089 * 17 16 14 33 33 H 1.07999 * 123.38366 * 0.02562 * 19 18 17 34 34 H 1.07991 * 122.45134 * 180.16752 * 20 19 18 35 35 H 1.09004 * 109.87866 * 241.64074 * 24 13 12 36 36 H 1.09000 * 109.88376 * 120.47393 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.4084 -2.5942 1.1497 11 6 2.2322 -3.6994 -0.0630 12 6 1.3484 -4.7898 -0.7183 13 7 0.5271 -4.0666 -1.7062 14 6 -0.0376 -4.6066 -2.8043 15 8 -0.6986 -3.9106 -3.5542 16 6 0.1370 -5.9811 -3.0858 17 6 -0.3138 -6.4965 -4.2579 18 6 -0.7275 -5.6318 -5.2981 19 6 -1.8717 -5.7711 -6.0403 20 6 -2.0285 -4.7858 -6.9846 21 6 -1.0457 -3.8748 -7.0244 22 17 -0.9938 -2.5318 -8.1233 23 16 0.1468 -4.2103 -5.8515 24 6 0.4272 -2.6583 -1.2957 25 1 -0.4850 0.8400 0.0004 26 1 -0.2238 -1.8676 1.2353 27 1 3.0943 -3.4673 -0.6884 28 1 2.5468 -3.9994 0.9367 29 1 1.9704 -5.5347 -1.2146 30 1 0.7139 -5.2644 0.0303 31 1 0.6291 -6.6210 -2.3683 32 1 -0.3566 -7.5667 -4.3962 33 1 -2.5801 -6.5734 -5.8954 34 1 -2.8790 -4.7501 -7.6491 35 1 -0.6148 -2.4005 -1.1063 36 1 0.8346 -2.0151 -2.0757 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844013917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:03 Heat of formation + Delta-G solvation = -22.013626 kcal Electronic energy + Delta-G solvation = -23105.536623 eV Core-core repulsion = 19515.401491 eV Total energy + Delta-G solvation = -3590.135132 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.78191 -38.08093 -37.33662 -36.45042 -34.33950 -33.56797 -32.21061 -30.28662 -28.66688 -27.73170 -25.62754 -24.30248 -23.00730 -21.60496 -19.76327 -19.59618 -18.69031 -17.40265 -17.13369 -16.47107 -15.71952 -15.39479 -14.90257 -14.69954 -14.44165 -13.91715 -13.46095 -13.26200 -13.24335 -13.00582 -12.83902 -12.73778 -12.40213 -12.01250 -11.71842 -11.53179 -11.35885 -11.16189 -11.06000 -10.81878 -10.68282 -10.59443 -10.53016 -10.19679 -9.74840 -9.37885 -9.31987 -8.69522 -8.41449 -8.34345 -7.83678 -7.58217 -6.30732 -4.39795 0.31895 1.33965 1.71773 2.09620 2.40280 2.75344 3.19864 3.27709 3.29936 3.70814 3.78247 4.25526 4.88225 4.95231 5.03362 5.29033 5.36208 5.43501 5.50033 5.68347 5.77082 5.84118 5.96462 6.00535 6.03721 6.24130 6.34947 6.45686 6.48372 6.73923 6.83950 6.98075 7.26033 7.36751 7.71279 7.97706 8.20769 8.62511 8.71265 9.28606 9.38185 10.76842 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013740 B = 0.003991 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.360105 B = 7014.606357 C = 8523.553311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.586 6.586 11 C -0.118 4.118 12 C 0.099 3.901 13 N -0.601 5.601 14 C 0.533 3.467 15 O -0.541 6.541 16 C -0.198 4.198 17 C -0.005 4.005 18 C -0.179 4.179 19 C -0.112 4.112 20 C -0.137 4.137 21 C -0.199 4.199 22 Cl -0.029 7.029 23 S 0.322 5.678 24 C 0.104 3.896 25 H 0.271 0.729 26 H 0.385 0.615 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.134 0.866 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.065 0.935 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 -12.836 -10.486 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.207 3.793 10 O -0.396 6.396 11 C -0.156 4.156 12 C -0.024 4.024 13 N -0.333 5.333 14 C 0.324 3.676 15 O -0.423 6.423 16 C -0.222 4.222 17 C -0.027 4.027 18 C -0.298 4.298 19 C -0.142 4.142 20 C -0.171 4.171 21 C -0.345 4.345 22 Cl -0.001 7.001 23 S 0.593 5.407 24 C -0.018 4.018 25 H 0.081 0.919 26 H 0.236 0.764 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.152 0.848 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.157 0.843 35 H 0.083 0.917 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.133 -12.019 -10.550 16.032 hybrid contribution -1.505 0.949 -0.519 1.853 sum -0.373 -11.070 -11.069 15.659 Atomic orbital electron populations 1.69640 1.06003 1.27989 1.49699 1.25070 0.95032 0.99763 0.93341 0.86416 0.79824 0.82444 0.78338 1.20384 1.20959 1.19654 1.21515 0.93704 0.90125 1.52402 0.91521 1.19485 0.86160 0.92087 0.81540 1.86079 1.53648 1.52748 1.47106 1.22759 0.97553 0.95032 1.00273 1.22357 0.93397 0.95500 0.91145 1.48820 1.49158 1.12607 1.22706 1.16838 0.81459 0.88038 0.81222 1.90949 1.40856 1.63817 1.46662 1.22419 1.04269 0.96535 0.98987 1.20596 0.93113 0.98461 0.90529 1.22485 1.02028 1.01866 1.03459 1.20415 0.97384 1.00569 0.95867 1.19759 1.00091 0.95163 1.02130 1.25021 1.06587 0.98753 1.04103 1.98342 1.98179 1.42829 1.60699 1.83180 1.18644 1.19806 1.19020 1.22986 1.01712 0.78025 0.99085 0.91924 0.76412 0.90516 0.90510 0.91945 0.91610 0.84842 0.84024 0.83804 0.84334 0.91660 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.69 10.97 55.43 0.61 -23.08 16 2 C 0.07 1.84 5.26 -17.82 -0.09 1.75 16 3 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -13.87 8.12 -34.44 -0.28 -14.15 16 8 H 0.07 1.68 7.77 -52.49 -0.41 1.28 16 9 C 0.25 5.86 0.86 -89.94 -0.08 5.78 16 10 O -0.59 -14.55 13.09 -35.23 -0.46 -15.01 16 11 C -0.12 -2.26 6.22 -24.58 -0.15 -2.42 16 12 C 0.10 1.65 6.43 -2.53 -0.02 1.63 16 13 N -0.60 -11.86 3.33 -173.99 -0.58 -12.44 16 14 C 0.53 9.93 7.13 -15.06 -0.11 9.82 16 15 O -0.54 -11.54 12.20 5.10 0.06 -11.48 16 16 C -0.20 -2.71 9.26 -39.28 -0.36 -3.08 16 17 C -0.01 -0.06 9.87 -39.25 -0.39 -0.45 16 18 C -0.18 -2.51 4.50 -38.78 -0.17 -2.68 16 19 C -0.11 -1.43 10.25 -40.31 -0.41 -1.84 16 20 C -0.14 -1.84 10.08 -41.36 -0.42 -2.25 16 21 C -0.20 -2.93 6.82 29.26 0.20 -2.73 16 22 Cl -0.03 -0.40 29.27 -51.86 -1.52 -1.91 16 23 S 0.32 4.96 19.64 -107.50 -2.11 2.85 16 24 C 0.10 2.45 5.39 -3.06 -0.02 2.44 16 25 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 26 H 0.38 9.89 7.17 45.56 0.33 10.21 16 27 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.06 0.82 7.21 -51.93 -0.37 0.44 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.13 1.44 6.84 -52.48 -0.36 1.08 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 34 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.07 1.71 8.01 -51.93 -0.42 1.30 16 36 H 0.07 1.73 7.82 -51.93 -0.41 1.32 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -29.17 331.18 -9.63 -38.80 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -3.30 Total: 10.17 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -2.30 Total: -8.18 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.03 Total: -35.52 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.40 Total: -26.50 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -2.11 Total: 2.85 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.52 Total: -1.91 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.17 -9.63 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844013917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.785 kcal (2) G-P(sol) polarization free energy of solvation -29.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds