Wall clock time and date at job start Tue Mar 31 2020 14:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99711 * 2 1 4 4 H 1.48499 * 109.46913 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47079 * 300.00005 * 3 2 1 6 6 H 1.48501 * 109.46992 * 60.00111 * 3 2 1 7 7 C 1.37877 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99828 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99923 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63550 * 300.69725 * 9 7 2 11 11 C 1.55152 * 110.71825 * 177.55974 * 9 7 2 12 12 C 1.54909 * 101.58032 * 205.95483 * 11 9 7 13 13 N 1.47422 * 104.83564 * 37.00513 * 12 11 9 14 14 C 1.34770 * 125.65124 * 155.91495 * 13 12 11 15 15 O 1.21802 * 120.00048 * 179.97438 * 14 13 12 16 16 C 1.41378 * 119.99928 * 359.97438 * 14 13 12 17 17 C 1.35748 * 120.00089 * 179.97438 * 16 14 13 18 18 C 1.41451 * 120.00210 * 179.97438 * 17 16 14 19 19 C 1.37093 * 125.46499 * 179.71479 * 18 17 16 20 20 C 1.37366 * 113.23870 * 179.86461 * 19 18 17 21 21 C 1.34061 * 115.10046 * 0.42502 * 20 19 18 22 22 Cl 1.73596 * 124.50437 * 179.78141 * 21 20 19 23 23 S 1.70605 * 110.99612 * 359.76595 * 21 20 19 24 24 C 1.47027 * 108.69865 * 335.87617 * 13 12 11 25 25 H 0.97000 * 119.99959 * 359.97438 * 1 2 3 26 26 H 0.96700 * 114.00311 * 56.86306 * 10 9 7 27 27 H 1.09005 * 111.00538 * 324.02517 * 11 9 7 28 28 H 1.08998 * 111.00529 * 87.84162 * 11 9 7 29 29 H 1.09002 * 110.37204 * 155.85017 * 12 11 9 30 30 H 1.09005 * 110.36554 * 278.05837 * 12 11 9 31 31 H 1.07998 * 120.00099 * 359.97438 * 16 14 13 32 32 H 1.07998 * 119.99811 * 359.97438 * 17 16 14 33 33 H 1.07998 * 123.37636 * 0.02562 * 19 18 17 34 34 H 1.07995 * 122.44914 * 180.17486 * 20 19 18 35 35 H 1.09003 * 109.87825 * 241.63649 * 24 13 12 36 36 H 1.09001 * 109.88209 * 120.47703 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 0.4076 -2.5947 1.1479 11 6 2.2323 -3.6994 -0.0639 12 6 1.3489 -4.7895 -0.7204 13 7 0.5283 -4.0659 -1.7085 14 6 -0.0371 -4.6058 -2.8063 15 8 -0.6981 -3.9096 -3.5559 16 6 0.1371 -5.9803 -3.0878 17 6 -0.4328 -6.5242 -4.1933 18 6 -0.2581 -7.8993 -4.4753 19 6 -0.7854 -8.5636 -5.5524 20 6 -0.4542 -9.8964 -5.5823 21 6 0.3094 -10.3157 -4.5632 22 17 0.8642 -11.9476 -4.3567 23 16 0.6638 -9.0323 -3.4965 24 6 0.4282 -2.6578 -1.2974 25 1 -0.4850 0.8400 0.0004 26 1 -0.2247 -1.8680 1.2334 27 1 3.0948 -3.4670 -0.6886 28 1 2.5461 -3.9997 0.9358 29 1 1.9712 -5.5343 -1.2166 30 1 0.7139 -5.2644 0.0276 31 1 0.7236 -6.5975 -2.4234 32 1 -1.0196 -5.9071 -4.8575 33 1 -1.3974 -8.0864 -6.3034 34 1 -0.7880 -10.5590 -6.3671 35 1 -0.6140 -2.4001 -1.1087 36 1 0.8361 -2.0142 -2.0768 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844013918.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:05 Heat of formation + Delta-G solvation = -56.637084 kcal Electronic energy + Delta-G solvation = -22235.169150 eV Core-core repulsion = 18643.532632 eV Total energy + Delta-G solvation = -3591.636518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.20031 -39.37916 -38.95823 -37.72859 -36.10338 -35.01554 -34.20071 -31.89957 -30.18969 -29.36758 -27.34061 -25.82368 -24.40141 -22.84475 -21.42642 -20.97454 -19.87593 -19.17332 -18.58426 -18.06616 -17.28331 -16.87810 -16.59956 -16.38767 -15.94714 -15.07913 -15.01782 -14.79917 -14.71240 -14.63063 -14.24448 -14.01656 -13.60848 -13.50000 -13.33984 -13.15628 -12.99489 -12.88155 -12.54057 -12.31416 -12.25272 -12.17657 -12.07623 -11.76214 -11.23348 -11.18383 -11.08267 -10.65395 -10.28778 -9.69366 -9.64022 -9.07180 -8.27448 -6.43468 -1.04586 0.00567 0.58615 0.71812 1.12215 1.39856 1.43107 1.53880 1.63614 2.16732 2.37918 2.40160 2.99112 3.58636 3.80507 3.97604 4.04003 4.10621 4.17701 4.28173 4.32725 4.43944 4.63009 4.70815 4.76367 4.87569 5.01857 5.04766 5.12785 5.13919 5.29406 5.31277 5.40127 5.53669 5.74702 6.03766 6.61760 6.68794 7.15937 7.27971 7.35597 8.78833 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.030264 B = 0.002392 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.980152 B =11705.251040 C =12205.283169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.023 3.977 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.556 4.556 8 H 0.068 0.932 9 C 0.232 3.768 10 O -0.588 6.588 11 C -0.113 4.113 12 C 0.103 3.897 13 N -0.613 5.613 14 C 0.549 3.451 15 O -0.606 6.606 16 C -0.225 4.225 17 C 0.036 3.964 18 C -0.210 4.210 19 C -0.077 4.077 20 C -0.130 4.130 21 C -0.187 4.187 22 Cl -0.008 7.008 23 S 0.254 5.746 24 C 0.120 3.880 25 H 0.270 0.730 26 H 0.377 0.623 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.179 0.821 34 H 0.172 0.828 35 H 0.029 0.971 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.653 -22.748 -8.908 24.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.203 1.203 7 C -0.594 4.594 8 H 0.086 0.914 9 C 0.191 3.809 10 O -0.397 6.397 11 C -0.150 4.150 12 C -0.018 4.018 13 N -0.344 5.344 14 C 0.344 3.656 15 O -0.492 6.492 16 C -0.248 4.248 17 C 0.014 3.986 18 C -0.328 4.328 19 C -0.109 4.109 20 C -0.162 4.162 21 C -0.333 4.333 22 Cl 0.020 6.980 23 S 0.522 5.478 24 C -0.004 4.004 25 H 0.080 0.920 26 H 0.227 0.773 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.125 0.875 30 H 0.093 0.907 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.196 0.804 34 H 0.190 0.810 35 H 0.048 0.952 36 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.401 -22.950 -7.853 24.375 hybrid contribution -1.063 1.587 -1.347 2.337 sum 1.338 -21.362 -9.200 23.298 Atomic orbital electron populations 1.69762 1.07136 1.28443 1.50359 1.25844 0.95819 1.02902 0.93139 0.85406 0.79161 0.78943 0.77536 1.18806 1.21026 1.20266 1.21882 0.93998 0.91327 1.52191 0.91358 1.19725 0.86701 0.93696 0.80760 1.86070 1.53594 1.52319 1.47692 1.22761 0.97032 0.93598 1.01652 1.22531 0.93240 0.95253 0.90825 1.48787 1.50497 1.11355 1.23771 1.17226 0.79240 0.89325 0.79841 1.90779 1.43517 1.65090 1.49817 1.21901 1.07599 0.93667 1.01606 1.20713 0.92372 0.91201 0.94308 1.22652 1.09734 0.97481 1.02969 1.21155 0.99295 0.92968 0.97432 1.20282 0.99635 0.96588 0.99694 1.25203 1.09474 0.93816 1.04760 1.98387 1.87902 1.14935 1.96748 1.83350 1.47113 0.94529 1.22793 1.22499 0.99254 0.80122 0.98526 0.92037 0.77327 0.89732 0.88966 0.87547 0.90678 0.83757 0.83827 0.80386 0.81049 0.95210 0.94827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.29 10.97 21.45 0.24 -50.05 16 2 C 0.02 1.24 5.27 84.65 0.45 1.69 16 3 Si 0.96 42.16 29.54 68.60 2.03 44.19 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.56 -29.18 8.12 25.60 0.21 -28.97 16 8 H 0.07 3.48 7.77 -2.91 -0.02 3.46 16 9 C 0.23 11.26 0.86 -10.36 -0.01 11.25 16 10 O -0.59 -29.94 13.09 -148.98 -1.95 -31.89 16 11 C -0.11 -4.25 6.22 31.98 0.20 -4.05 16 12 C 0.10 3.36 6.48 86.86 0.56 3.92 16 13 N -0.61 -25.33 3.33 -822.59 -2.74 -28.07 16 14 C 0.55 21.82 7.60 85.02 0.65 22.47 16 15 O -0.61 -29.01 16.43 -4.68 -0.08 -29.08 16 16 C -0.22 -6.33 8.80 22.47 0.20 -6.13 16 17 C 0.04 0.86 9.36 22.48 0.21 1.07 16 18 C -0.21 -3.88 6.20 22.79 0.14 -3.73 16 19 C -0.08 -1.09 10.25 21.79 0.22 -0.86 16 20 C -0.13 -1.69 10.08 21.11 0.21 -1.48 16 21 C -0.19 -2.83 6.82 66.87 0.46 -2.37 16 22 Cl -0.01 -0.12 29.27 -2.72 -0.08 -0.20 16 23 S 0.25 4.13 21.75 -56.49 -1.23 2.90 16 24 C 0.12 6.03 5.39 86.72 0.47 6.50 16 25 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 26 H 0.38 20.18 7.17 -74.06 -0.53 19.65 16 27 H 0.08 3.04 8.04 -2.38 -0.02 3.02 16 28 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.11 2.55 7.12 -2.39 -0.02 2.54 16 30 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.14 3.25 5.71 -2.91 -0.02 3.24 16 32 H 0.14 3.59 7.46 -2.91 -0.02 3.57 16 33 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.03 1.67 8.01 -2.39 -0.02 1.65 16 36 H 0.03 1.87 7.82 -2.39 -0.02 1.85 16 Total: -1.00 -66.04 336.94 0.75 -65.29 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.60 Total: 27.63 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: 3.96 Total: -0.71 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -2.50 Total: -78.12 kcal Atomic # 8 Polarization: -58.95 SS G_CDS: -2.03 Total: -60.98 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Atomic # 16 Polarization: 4.13 SS G_CDS: -1.23 Total: 2.90 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.08 Total: -0.20 kcal Total: -66.04 0.75 -65.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844013918.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.652 kcal (2) G-P(sol) polarization free energy of solvation -66.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds