Wall clock time and date at job start Tue Mar 31 2020 15:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00175 * 2 1 4 4 H 1.48500 * 109.47212 * 269.99830 * 3 2 1 5 5 H 1.48497 * 109.47277 * 30.00011 * 3 2 1 6 6 H 1.48504 * 109.47139 * 150.00178 * 3 2 1 7 7 C 1.37878 * 119.99642 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00489 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99997 * 179.97438 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99642 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00300 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99773 * 180.02562 * 11 10 9 14 14 O 1.42905 * 109.47264 * 179.97438 * 13 11 10 15 15 C 1.34972 * 117.00102 * 179.97438 * 14 13 11 16 16 O 1.21705 * 119.99936 * 359.97438 * 15 14 13 17 17 C 1.41463 * 119.99685 * 180.02562 * 15 14 13 18 18 S 1.75665 * 125.11302 * 0.02562 * 17 15 14 19 19 C 1.75558 * 91.21625 * 179.97438 * 18 17 15 20 20 C 1.34230 * 110.69503 * 359.97438 * 19 18 17 21 21 C 1.37272 * 125.10702 * 179.72065 * 17 15 14 22 22 O 1.37630 * 124.48562 * 0.27001 * 21 17 15 23 23 C 1.43378 * 114.51180 * 163.26124 * 22 21 17 24 24 C 1.53223 * 109.12375 * 46.52769 * 23 22 21 25 25 O 1.38241 * 124.13787 * 180.20367 * 20 19 18 26 26 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46460 * 60.00469 * 9 7 2 28 28 H 1.08996 * 109.46822 * 300.00860 * 9 7 2 29 29 H 0.96998 * 120.00192 * 359.97438 * 10 9 7 30 30 H 1.09001 * 109.47438 * 59.99564 * 13 11 10 31 31 H 1.09004 * 109.47113 * 299.99819 * 13 11 10 32 32 H 1.07994 * 124.64849 * 179.97438 * 19 18 17 33 33 H 1.08993 * 109.52892 * 166.42226 * 23 22 21 34 34 H 1.08996 * 109.52347 * 286.56637 * 23 22 21 35 35 H 1.09001 * 109.52580 * 57.64911 * 24 23 22 36 36 H 1.09002 * 109.52331 * 177.77768 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9997 -2.5754 0.0001 11 6 5.3248 -2.8217 0.0001 12 8 6.1130 -1.8999 -0.0004 13 6 5.8271 -4.2425 -0.0003 14 8 7.2561 -4.2426 -0.0008 15 6 7.8688 -5.4453 -0.0007 16 8 7.2059 -6.4659 0.0002 17 6 9.2815 -5.5193 -0.0005 18 16 10.3658 -4.1372 0.0002 19 6 11.7697 -5.1912 0.0007 20 6 11.3952 -6.4802 0.0009 21 6 10.0111 -6.6820 0.0050 22 8 9.4644 -7.9451 0.0060 23 6 10.3760 -8.9882 -0.3638 24 6 11.6926 -8.7970 0.3963 25 8 12.2775 -7.5444 0.0053 26 1 -0.4849 0.8401 0.0004 27 1 3.8751 -0.6798 0.8895 28 1 3.8745 -0.6809 -0.8904 29 1 3.3694 -3.3126 0.0009 30 1 5.4638 -4.7561 -0.8905 31 1 5.4636 -4.7567 0.8895 32 1 12.7941 -4.8493 0.0008 33 1 9.9451 -9.9561 -0.1083 34 1 10.5638 -8.9445 -1.4366 35 1 11.4975 -8.7977 1.4687 36 1 12.3767 -9.6090 0.1500 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848818416.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:21 Heat of formation + Delta-G solvation = -145.656480 kcal Electronic energy + Delta-G solvation = -24346.346635 eV Core-core repulsion = 20310.140781 eV Total energy + Delta-G solvation = -4036.205853 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.54309 -40.55625 -38.84700 -37.51184 -36.63926 -35.89030 -34.35891 -32.42426 -30.83898 -30.30238 -29.28310 -27.25085 -25.35583 -24.21630 -22.37126 -21.67186 -20.12893 -19.80645 -19.52644 -17.88171 -17.74645 -17.34956 -16.91609 -16.71636 -16.39282 -15.92621 -15.40863 -15.29062 -15.17163 -14.84745 -14.69934 -14.59743 -14.04957 -13.68992 -13.40069 -13.15239 -12.98918 -12.54893 -12.35732 -12.07799 -11.68999 -11.50758 -11.46169 -11.26287 -11.06272 -10.81311 -10.71981 -10.67779 -9.99399 -9.53354 -9.32613 -9.09027 -8.80985 -8.38660 -8.25494 -6.23374 -4.26325 -0.11417 0.95597 1.23309 1.66436 2.37004 2.60218 2.79291 3.00016 3.05114 3.26141 3.32916 3.40832 3.59385 3.90975 4.10041 4.31753 4.33377 4.39080 4.70074 4.82703 4.90356 4.98053 5.02709 5.11362 5.13897 5.20777 5.25802 5.48099 6.12172 6.25437 6.55320 6.74241 7.02022 7.10894 7.32741 7.60943 8.06171 8.42527 8.69211 8.81141 9.35725 10.88412 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.032513 B = 0.002287 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.975465 B =12239.692529 C =13054.657894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.699 5.699 11 C 0.503 3.497 12 O -0.536 6.536 13 C 0.051 3.949 14 O -0.327 6.327 15 C 0.540 3.460 16 O -0.487 6.487 17 C -0.280 4.280 18 S 0.285 5.715 19 C -0.213 4.213 20 C 0.024 3.976 21 C 0.140 3.860 22 O -0.262 6.262 23 C 0.012 3.988 24 C 0.017 3.983 25 O -0.290 6.290 26 H 0.268 0.732 27 H 0.028 0.972 28 H 0.023 0.977 29 H 0.399 0.601 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.185 0.815 33 H 0.128 0.872 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.188 -18.000 0.064 31.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.350 5.350 11 C 0.286 3.714 12 O -0.414 6.414 13 C -0.027 4.027 14 O -0.242 6.242 15 C 0.385 3.615 16 O -0.377 6.377 17 C -0.398 4.398 18 S 0.551 5.449 19 C -0.350 4.350 20 C -0.032 4.032 21 C 0.077 3.923 22 O -0.175 6.175 23 C -0.064 4.064 24 C -0.059 4.059 25 O -0.206 6.206 26 H 0.078 0.922 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.233 0.767 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.202 0.798 33 H 0.146 0.854 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 26.124 -15.942 0.064 30.604 hybrid contribution 0.076 -1.410 -0.016 1.412 sum 26.200 -17.352 0.048 31.425 Atomic orbital electron populations 1.69878 1.06216 1.27489 1.49208 1.24794 0.94812 0.99202 0.93816 0.86810 0.80580 0.83175 0.79094 1.19798 1.20863 1.18441 1.21071 0.88350 0.95337 1.53583 0.90121 1.19553 0.95349 0.77977 0.97069 1.46056 1.04860 1.11533 1.72512 1.19908 0.83710 0.89351 0.78385 1.90693 1.55324 1.45631 1.49732 1.22446 0.77957 0.97403 1.04886 1.86194 1.22076 1.31631 1.84332 1.18058 0.87061 0.82030 0.74392 1.90950 1.65821 1.35410 1.45505 1.21385 0.95733 0.96748 1.25926 1.84839 0.89513 1.01939 1.68628 1.25372 1.05856 0.94486 1.09334 1.18108 0.87120 0.89254 1.08702 1.18830 0.89724 0.85968 0.97740 1.87171 1.35552 1.11461 1.83283 1.23777 0.90447 0.91669 1.00511 1.23692 0.96229 0.85818 1.00182 1.87145 1.32707 1.15276 1.85488 0.92201 0.95409 0.95870 0.76676 0.88414 0.88407 0.79789 0.85419 0.89995 0.90146 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.55 -14.82 9.83 -34.44 -0.34 -15.15 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 9 C 0.22 5.40 4.50 -5.19 -0.02 5.38 16 10 N -0.70 -14.00 5.55 -61.47 -0.34 -14.34 16 11 C 0.50 9.72 7.91 -10.98 -0.09 9.63 16 12 O -0.54 -12.36 16.50 -14.35 -0.24 -12.60 16 13 C 0.05 0.78 5.86 36.01 0.21 0.99 16 14 O -0.33 -5.30 9.37 -48.00 -0.45 -5.75 16 15 C 0.54 8.29 7.72 31.96 0.25 8.54 16 16 O -0.49 -8.27 15.63 -25.42 -0.40 -8.67 16 17 C -0.28 -3.64 6.25 -38.71 -0.24 -3.88 16 18 S 0.29 2.87 23.00 -107.50 -2.47 0.39 16 19 C -0.21 -1.75 11.17 29.32 0.33 -1.42 16 20 C 0.02 0.24 6.54 -40.38 -0.26 -0.02 16 21 C 0.14 1.66 6.58 -39.32 -0.26 1.40 16 22 O -0.26 -3.04 9.60 -49.09 -0.47 -3.52 16 23 C 0.01 0.08 7.13 37.27 0.27 0.34 16 24 C 0.02 0.09 7.15 37.27 0.27 0.36 16 25 O -0.29 -2.48 10.78 -35.43 -0.38 -2.86 16 26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 28 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 29 H 0.40 6.92 8.32 -40.82 -0.34 6.58 16 30 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 31 H 0.10 1.31 8.13 -51.93 -0.42 0.89 16 32 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.13 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -35.78 334.83 -7.24 -43.02 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -3.64 Total: -0.01 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 0.01 Total: 8.24 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.43 Total: -39.86 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -1.94 Total: -33.39 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -2.47 Total: 0.39 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.78 -7.24 -43.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848818416.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.641 kcal (2) G-P(sol) polarization free energy of solvation -35.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds