Wall clock time and date at job start Tue Mar 31 2020 14:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47406 * 321.38415 * 3 2 1 5 5 C 1.36940 * 120.00035 * 273.01835 * 4 3 2 6 6 H 1.08002 * 119.99525 * 187.51008 * 5 4 3 7 7 C 1.38807 * 119.99851 * 7.51494 * 5 4 3 8 8 N 1.31616 * 120.00673 * 27.07324 * 7 5 4 9 9 Si 1.86805 * 119.99485 * 207.07039 * 7 5 4 10 10 H 1.48495 * 109.47176 * 90.00325 * 9 7 5 11 11 H 1.48502 * 109.46944 * 209.99808 * 9 7 5 12 12 H 1.48492 * 109.47401 * 329.99976 * 9 7 5 13 13 S 1.65596 * 119.99824 * 93.01438 * 4 3 2 14 14 O 1.42095 * 104.28001 * 333.93668 * 13 4 3 15 15 O 1.42098 * 104.27874 * 206.07118 * 13 4 3 16 16 C 1.81409 * 104.44853 * 90.00366 * 13 4 3 17 17 C 1.52996 * 109.47197 * 180.02562 * 16 13 4 18 18 C 1.50698 * 109.46918 * 180.02562 * 17 16 13 19 19 C 1.38234 * 120.00698 * 99.99969 * 18 17 16 20 20 C 1.38227 * 120.01026 * 179.97438 * 19 18 17 21 21 C 1.38261 * 120.03009 * 0.04294 * 20 19 18 22 22 C 1.38195 * 120.00951 * 359.97438 * 21 20 19 23 23 C 1.38334 * 120.00666 * 279.72530 * 18 17 16 24 24 Cl 1.73601 * 120.00970 * 359.97349 * 23 18 17 25 25 H 4.40639 * 5.51444 * 180.02562 * 4 1 2 26 26 H 1.09007 * 109.46811 * 201.38701 * 3 2 1 27 27 H 1.08992 * 109.47527 * 81.38838 * 3 2 1 28 28 H 0.96994 * 120.00561 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46981 * 59.99900 * 16 13 4 30 30 H 1.08999 * 109.46716 * 300.00325 * 16 13 4 31 31 H 1.08994 * 109.47547 * 60.00050 * 17 16 13 32 32 H 1.08996 * 109.46868 * 299.99768 * 17 16 13 33 33 H 1.08001 * 119.99882 * 359.97438 * 19 18 17 34 34 H 1.08001 * 119.98245 * 180.02562 * 20 19 18 35 35 H 1.07998 * 119.99229 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.00465 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0783 0.8620 5 6 3.3042 -0.8598 2.2032 6 1 3.7772 -1.6119 2.8173 7 6 2.8678 0.3282 2.7733 8 7 1.8690 0.9911 2.2300 9 14 3.6982 0.9860 4.3119 10 1 4.8239 1.8741 3.9256 11 1 2.7141 1.7552 5.1151 12 1 4.2167 -0.1481 5.1181 13 16 3.4827 -2.5622 0.2145 14 8 2.6601 -2.6417 -0.9414 15 8 3.3132 -3.4659 1.2979 16 6 5.2315 -2.4525 -0.2553 17 6 5.6775 -3.7787 -0.8741 18 6 7.1304 -3.6877 -1.2637 19 6 8.1011 -4.2349 -0.4457 20 6 9.4337 -4.1519 -0.8032 21 6 9.7968 -3.5209 -1.9786 22 6 8.8272 -2.9732 -2.7971 23 6 7.4926 -3.0616 -2.4429 24 17 6.2734 -2.3810 -3.4745 25 1 -1.0498 -0.0004 0.0001 26 1 3.0089 0.9578 0.3748 27 1 3.0095 -0.1530 -1.0160 28 1 1.5643 1.8214 2.6282 29 1 5.8329 -2.2435 0.6295 30 1 5.3629 -1.6505 -0.9816 31 1 5.0761 -3.9873 -1.7589 32 1 5.5460 -4.5809 -0.1480 33 1 7.8183 -4.7273 0.4730 34 1 10.1917 -4.5800 -0.1639 35 1 10.8382 -3.4561 -2.2572 36 1 9.1109 -2.4807 -3.7155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849337765.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:44 Heat of formation + Delta-G solvation = 18.890953 kcal Electronic energy + Delta-G solvation = -23106.264420 eV Core-core repulsion = 19517.903043 eV Total energy + Delta-G solvation = -3588.361376 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -39.58739 -36.46937 -36.22167 -36.03481 -34.87830 -34.26644 -31.77179 -31.00226 -30.89357 -29.52571 -26.44150 -24.39218 -23.66378 -22.85344 -21.19823 -18.48250 -17.88298 -17.37142 -16.87891 -16.30300 -15.98765 -15.76336 -15.23262 -14.84011 -14.44387 -14.00002 -13.73839 -13.68010 -13.49062 -13.21619 -13.09425 -12.44454 -12.21344 -11.77384 -11.72602 -11.70743 -11.54936 -11.28873 -11.08728 -10.95428 -10.93238 -10.86305 -10.85501 -10.45561 -10.17870 -10.00053 -9.50784 -9.07649 -9.01604 -8.75499 -8.68183 -8.14844 -6.30540 -3.79525 0.98643 1.07431 1.25496 2.10287 3.18658 3.26668 3.28510 3.45073 3.65383 4.19739 4.36506 4.48800 4.57477 4.60442 4.75579 4.80699 4.96020 4.99634 5.11569 5.20435 5.24007 5.39769 5.45212 5.65449 5.72488 5.83603 5.90892 6.05014 6.15358 6.22103 6.25425 6.32654 6.63711 6.75770 7.04103 7.31190 7.51805 8.32208 8.86026 9.11527 9.23041 10.65854 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.004271 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.293901 B = 6553.764895 C = 7368.120053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.093 4.093 3 C 0.251 3.749 4 N -0.834 5.834 5 C -0.314 4.314 6 H 0.113 0.887 7 C 0.045 3.955 8 N -0.837 5.837 9 Si 0.901 3.099 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.269 1.269 13 S 2.566 3.434 14 O -0.973 6.973 15 O -0.964 6.964 16 C -0.653 4.653 17 C -0.072 4.072 18 C -0.057 4.057 19 C -0.106 4.106 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.110 4.110 23 C -0.036 4.036 24 Cl -0.062 7.062 25 H 0.196 0.804 26 H 0.101 0.899 27 H 0.061 0.939 28 H 0.269 0.731 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.670 -5.063 -7.929 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.096 4.096 3 C 0.125 3.875 4 N -0.663 5.663 5 C -0.448 4.448 6 H 0.131 0.869 7 C -0.163 4.163 8 N -0.475 5.475 9 Si 0.727 3.273 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.194 1.194 13 S 2.658 3.342 14 O -0.963 6.963 15 O -0.953 6.953 16 C -0.775 4.775 17 C -0.110 4.110 18 C -0.058 4.058 19 C -0.125 4.125 20 C -0.132 4.132 21 C -0.136 4.136 22 C -0.128 4.128 23 C -0.062 4.062 24 Cl -0.033 7.033 25 H 0.214 0.786 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.949 -5.631 -8.158 16.307 hybrid contribution 0.755 1.071 0.792 1.531 sum 13.704 -4.560 -7.366 16.212 Atomic orbital electron populations 1.24129 0.95277 1.03393 1.06047 1.22855 0.94102 0.97427 0.95183 1.17786 0.85029 0.93663 0.91010 1.53393 1.69854 1.29329 1.13746 1.19330 1.39886 1.03867 0.81714 0.86928 1.25088 0.95191 0.96963 0.99102 1.70233 1.19717 1.16408 1.41160 0.86339 0.79577 0.79380 0.81967 1.20378 1.21102 1.19366 1.07531 0.78504 0.74559 0.73612 1.93497 1.64645 1.86311 1.51801 1.93471 1.85687 1.63292 1.52882 1.31195 1.32687 1.03450 1.10195 1.20301 0.92394 0.96475 1.01847 1.19719 0.96449 0.96831 0.92829 1.21130 0.92285 0.99545 0.99492 1.21242 0.96167 0.98958 0.96825 1.21082 0.99222 0.98499 0.94789 1.21041 0.90702 1.00441 1.00658 1.20892 0.90253 1.01344 0.93734 1.98390 1.55005 1.83422 1.66509 0.78643 0.88090 0.92058 0.92024 0.85659 0.86336 0.89450 0.89493 0.84776 0.85418 0.85305 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 72. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.23 19.25 29.55 0.57 -5.66 16 2 C -0.09 -2.29 11.12 -37.12 -0.41 -2.70 16 3 C 0.25 5.75 5.03 -6.83 -0.03 5.72 16 4 N -0.83 -19.87 2.81 -62.77 -0.18 -20.05 16 5 C -0.31 -7.95 9.28 -15.06 -0.14 -8.09 16 6 H 0.11 2.82 7.40 -52.49 -0.39 2.43 16 7 C 0.05 1.13 4.86 -17.43 -0.08 1.04 16 8 N -0.84 -21.61 9.10 55.49 0.50 -21.11 16 9 Si 0.90 19.29 29.63 -169.99 -5.04 14.26 16 10 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 11 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 13 S 2.57 55.52 5.33 -107.50 -0.57 54.95 16 14 O -0.97 -22.82 16.95 -57.54 -0.98 -23.80 16 15 O -0.96 -23.55 16.88 -57.54 -0.97 -24.52 16 16 C -0.65 -10.85 6.11 37.16 0.23 -10.62 16 17 C -0.07 -1.06 4.81 -27.89 -0.13 -1.19 16 18 C -0.06 -0.75 5.14 -104.59 -0.54 -1.29 16 19 C -0.11 -1.20 9.67 -39.59 -0.38 -1.58 16 20 C -0.11 -1.08 10.05 -39.58 -0.40 -1.47 16 21 C -0.12 -1.08 10.05 -39.59 -0.40 -1.47 16 22 C -0.11 -1.16 9.83 -39.55 -0.39 -1.55 16 23 C -0.04 -0.45 6.31 -39.50 -0.25 -0.70 16 24 Cl -0.06 -0.84 26.65 -51.86 -1.38 -2.22 16 25 H 0.20 3.74 7.80 -54.10 -0.42 3.32 16 26 H 0.10 2.32 6.52 -51.92 -0.34 1.99 16 27 H 0.06 1.22 7.68 -51.93 -0.40 0.82 16 28 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 29 H 0.12 1.96 8.14 -51.92 -0.42 1.53 16 30 H 0.12 1.88 7.29 -51.92 -0.38 1.50 16 31 H 0.09 1.28 7.34 -51.93 -0.38 0.90 16 32 H 0.09 1.17 8.00 -51.93 -0.42 0.75 16 33 H 0.13 1.31 8.04 -52.49 -0.42 0.88 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 LS Contribution 340.88 15.07 5.14 5.14 Total: -1.00 -31.68 340.88 -9.81 -41.49 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -3.97 Total: 5.44 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: -2.36 Total: -29.58 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.33 Total: -41.16 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -1.95 Total: -48.31 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.04 Total: 14.26 kcal Atomic # 16 Polarization: 55.52 SS G_CDS: -0.57 Total: 54.95 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.38 Total: -2.22 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.68 -9.81 -41.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849337765.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.378 kcal (2) G-P(sol) polarization free energy of solvation -31.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds