Wall clock time and date at job start Tue Mar 31 2020 14:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47406 * 321.38415 * 3 2 1 5 5 C 1.36940 * 120.00035 * 273.01835 * 4 3 2 6 6 H 1.08002 * 119.99525 * 187.51008 * 5 4 3 7 7 C 1.38807 * 119.99851 * 7.51494 * 5 4 3 8 8 N 1.31616 * 120.00673 * 27.07324 * 7 5 4 9 9 Si 1.86805 * 119.99485 * 207.07039 * 7 5 4 10 10 H 1.48495 * 109.47176 * 90.00325 * 9 7 5 11 11 H 1.48502 * 109.46944 * 209.99808 * 9 7 5 12 12 H 1.48492 * 109.47401 * 329.99976 * 9 7 5 13 13 S 1.65596 * 119.99824 * 93.01438 * 4 3 2 14 14 O 1.42095 * 104.28001 * 333.93668 * 13 4 3 15 15 O 1.42098 * 104.27874 * 206.07118 * 13 4 3 16 16 C 1.81409 * 104.44853 * 90.00366 * 13 4 3 17 17 C 1.52996 * 109.47197 * 180.02562 * 16 13 4 18 18 C 1.50698 * 109.46918 * 180.02562 * 17 16 13 19 19 C 1.38234 * 120.00698 * 99.99969 * 18 17 16 20 20 C 1.38227 * 120.01026 * 179.97438 * 19 18 17 21 21 C 1.38261 * 120.03009 * 0.04294 * 20 19 18 22 22 C 1.38195 * 120.00951 * 359.97438 * 21 20 19 23 23 C 1.38334 * 120.00666 * 279.72530 * 18 17 16 24 24 Cl 1.73601 * 120.00970 * 359.97349 * 23 18 17 25 25 H 4.40639 * 5.51444 * 180.02562 * 4 1 2 26 26 H 1.09007 * 109.46811 * 201.38701 * 3 2 1 27 27 H 1.08992 * 109.47527 * 81.38838 * 3 2 1 28 28 H 0.96994 * 120.00561 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46981 * 59.99900 * 16 13 4 30 30 H 1.08999 * 109.46716 * 300.00325 * 16 13 4 31 31 H 1.08994 * 109.47547 * 60.00050 * 17 16 13 32 32 H 1.08996 * 109.46868 * 299.99768 * 17 16 13 33 33 H 1.08001 * 119.99882 * 359.97438 * 19 18 17 34 34 H 1.08001 * 119.98245 * 180.02562 * 20 19 18 35 35 H 1.07998 * 119.99229 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.00465 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0783 0.8620 5 6 3.3042 -0.8598 2.2032 6 1 3.7772 -1.6119 2.8173 7 6 2.8678 0.3282 2.7733 8 7 1.8690 0.9911 2.2300 9 14 3.6982 0.9860 4.3119 10 1 4.8239 1.8741 3.9256 11 1 2.7141 1.7552 5.1151 12 1 4.2167 -0.1481 5.1181 13 16 3.4827 -2.5622 0.2145 14 8 2.6601 -2.6417 -0.9414 15 8 3.3132 -3.4659 1.2979 16 6 5.2315 -2.4525 -0.2553 17 6 5.6775 -3.7787 -0.8741 18 6 7.1304 -3.6877 -1.2637 19 6 8.1011 -4.2349 -0.4457 20 6 9.4337 -4.1519 -0.8032 21 6 9.7968 -3.5209 -1.9786 22 6 8.8272 -2.9732 -2.7971 23 6 7.4926 -3.0616 -2.4429 24 17 6.2734 -2.3810 -3.4745 25 1 -1.0498 -0.0004 0.0001 26 1 3.0089 0.9578 0.3748 27 1 3.0095 -0.1530 -1.0160 28 1 1.5643 1.8214 2.6282 29 1 5.8329 -2.2435 0.6295 30 1 5.3629 -1.6505 -0.9816 31 1 5.0761 -3.9873 -1.7589 32 1 5.5460 -4.5809 -0.1480 33 1 7.8183 -4.7273 0.4730 34 1 10.1917 -4.5800 -0.1639 35 1 10.8382 -3.4561 -2.2572 36 1 9.1109 -2.4807 -3.7155 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849337765.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:42 Heat of formation + Delta-G solvation = -0.227371 kcal Electronic energy + Delta-G solvation = -23107.093452 eV Core-core repulsion = 19517.903043 eV Total energy + Delta-G solvation = -3589.190409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -40.43428 -38.04517 -37.86436 -37.41171 -36.79540 -35.41959 -33.55066 -32.78770 -31.68780 -30.62475 -28.21556 -25.84913 -25.21631 -23.65678 -22.16587 -20.26721 -19.68132 -18.92088 -18.11074 -17.90283 -17.32942 -17.10968 -16.46011 -16.23472 -16.14089 -15.35086 -14.99183 -14.82966 -14.72626 -14.69139 -14.30379 -14.13163 -13.51593 -13.48813 -13.14985 -13.02828 -12.72415 -12.70068 -12.66240 -12.64413 -12.40403 -12.23988 -12.10470 -11.97875 -11.91387 -11.57477 -11.17498 -10.88743 -10.49452 -9.97723 -9.84781 -9.62928 -8.05557 -5.71036 -0.54701 0.18542 0.30921 1.18389 1.49743 1.51664 1.60735 1.86961 2.43250 2.52044 2.63265 2.72627 2.98024 3.21514 3.36717 3.62257 3.70626 3.78389 3.97830 4.03185 4.16652 4.34450 4.39545 4.42739 4.44542 4.65881 4.73811 4.86071 4.98963 5.00841 5.28974 5.30112 5.42634 5.49315 5.55991 5.72263 5.88759 6.50904 7.10497 7.29238 7.43881 8.91960 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.004271 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.293901 B = 6553.764895 C = 7368.120053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.133 4.133 3 C 0.254 3.746 4 N -0.869 5.869 5 C -0.348 4.348 6 H 0.104 0.896 7 C 0.000 4.000 8 N -0.885 5.885 9 Si 0.965 3.035 10 H -0.269 1.269 11 H -0.294 1.294 12 H -0.268 1.268 13 S 2.594 3.406 14 O -0.997 6.997 15 O -0.996 6.996 16 C -0.602 4.602 17 C -0.080 4.080 18 C -0.078 4.078 19 C -0.113 4.113 20 C -0.111 4.111 21 C -0.108 4.108 22 C -0.115 4.115 23 C -0.051 4.051 24 Cl -0.080 7.080 25 H 0.226 0.774 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.261 0.739 29 H 0.150 0.850 30 H 0.137 0.863 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.147 0.853 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.384 -6.297 -8.711 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.135 4.135 3 C 0.128 3.872 4 N -0.699 5.699 5 C -0.477 4.477 6 H 0.122 0.878 7 C -0.203 4.203 8 N -0.523 5.523 9 Si 0.790 3.210 10 H -0.194 1.194 11 H -0.220 1.220 12 H -0.193 1.193 13 S 2.693 3.307 14 O -0.987 6.987 15 O -0.987 6.987 16 C -0.733 4.733 17 C -0.119 4.119 18 C -0.080 4.080 19 C -0.131 4.131 20 C -0.128 4.128 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.078 4.078 24 Cl -0.051 7.051 25 H 0.243 0.757 26 H 0.114 0.886 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.168 0.832 30 H 0.155 0.845 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.165 0.835 34 H 0.176 0.824 35 H 0.179 0.821 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 16.570 -6.808 -8.841 19.977 hybrid contribution -0.163 1.050 0.749 1.299 sum 16.407 -5.758 -8.092 19.179 Atomic orbital electron populations 1.25023 0.96481 1.02641 1.05460 1.23773 0.95608 0.98268 0.95899 1.17918 0.84194 0.93212 0.91850 1.53026 1.75812 1.27110 1.13975 1.19325 1.40609 1.04252 0.83503 0.87835 1.25719 0.95453 0.97682 1.01407 1.70354 1.21945 1.17137 1.42886 0.85371 0.78338 0.78528 0.78725 1.19407 1.22039 1.19275 1.04939 0.79512 0.73378 0.72907 1.93490 1.66098 1.86453 1.52693 1.93456 1.86731 1.64183 1.54314 1.30542 1.24310 1.06326 1.12159 1.20415 0.94406 0.94908 1.02157 1.19537 0.95194 0.99278 0.94031 1.21389 0.92831 0.99218 0.99653 1.21634 0.96017 0.98049 0.97139 1.21528 1.00529 0.96591 0.93964 1.21334 0.90002 1.00432 1.01597 1.21091 0.90859 1.02129 0.93724 1.98385 1.55880 1.83753 1.67051 0.75698 0.88602 0.89801 0.92843 0.83172 0.84462 0.89581 0.88098 0.83532 0.82443 0.82079 0.83455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -13.16 19.25 74.32 1.43 -11.73 16 2 C -0.13 -6.76 11.12 31.13 0.35 -6.42 16 3 C 0.25 11.96 5.03 84.57 0.43 12.39 16 4 N -0.87 -42.11 2.81 -352.51 -0.99 -43.10 16 5 C -0.35 -18.13 9.28 84.03 0.78 -17.35 16 6 H 0.10 5.34 7.40 -2.91 -0.02 5.32 16 7 C 0.00 0.02 4.86 84.86 0.41 0.43 16 8 N -0.88 -47.83 9.10 21.65 0.20 -47.63 16 9 Si 0.97 41.03 29.63 68.60 2.03 43.07 16 10 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 13 S 2.59 111.14 5.33 -56.49 -0.30 110.84 16 14 O -1.00 -46.63 16.95 -127.65 -2.16 -48.80 16 15 O -1.00 -48.76 16.88 -127.65 -2.15 -50.92 16 16 C -0.60 -18.46 6.11 71.98 0.44 -18.02 16 17 C -0.08 -2.14 4.81 29.85 0.14 -2.00 16 18 C -0.08 -1.81 5.14 -19.84 -0.10 -1.92 16 19 C -0.11 -2.08 9.67 22.27 0.22 -1.86 16 20 C -0.11 -1.54 10.05 22.27 0.22 -1.31 16 21 C -0.11 -1.44 10.05 22.26 0.22 -1.21 16 22 C -0.12 -1.99 9.83 22.29 0.22 -1.77 16 23 C -0.05 -1.16 6.31 22.32 0.14 -1.02 16 24 Cl -0.08 -1.99 26.65 -2.72 -0.07 -2.06 16 25 H 0.23 8.67 7.80 -4.43 -0.03 8.63 16 26 H 0.10 4.61 6.52 -2.38 -0.02 4.59 16 27 H 0.08 3.38 7.68 -2.39 -0.02 3.36 16 28 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 29 H 0.15 4.17 8.14 -2.39 -0.02 4.15 16 30 H 0.14 3.96 7.29 -2.39 -0.02 3.94 16 31 H 0.09 2.35 7.34 -2.39 -0.02 2.33 16 32 H 0.10 2.43 8.00 -2.39 -0.02 2.41 16 33 H 0.15 2.26 8.04 -2.91 -0.02 2.23 16 34 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 35 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 36 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -71.37 340.88 2.54 -68.84 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 1.09 Total: 21.55 kcal Atomic # 6 Polarization: -56.69 SS G_CDS: 4.90 Total: -51.80 kcal Atomic # 7 Polarization: -89.93 SS G_CDS: -0.79 Total: -90.73 kcal Atomic # 8 Polarization: -95.39 SS G_CDS: -4.32 Total: -99.71 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: 111.14 SS G_CDS: -0.30 Total: 110.84 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.07 Total: -2.06 kcal Total: -71.37 2.54 -68.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849337765.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.609 kcal (2) G-P(sol) polarization free energy of solvation -71.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds