Wall clock time and date at job start Tue Mar 31 2020 15:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86803 * 119.99929 * 2 1 4 4 H 1.48497 * 109.47281 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47265 * 119.99871 * 3 2 1 6 6 H 1.48500 * 109.47105 * 240.00000 * 3 2 1 7 7 C 1.39906 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99994 * 175.55701 * 7 2 1 9 9 C 1.41156 * 119.99716 * 355.56316 * 7 2 1 10 10 C 1.40863 * 120.16319 * 214.50800 * 9 7 2 11 11 C 1.36378 * 119.82877 * 179.69004 * 10 9 7 12 12 C 1.39480 * 120.16898 * 0.58701 * 11 10 9 13 13 N 1.39229 * 119.83697 * 179.73455 * 12 11 10 14 14 C 1.34778 * 119.99761 * 35.26420 * 13 12 11 15 15 O 1.21273 * 120.00237 * 355.71396 * 14 13 12 16 16 C 1.50707 * 119.99844 * 175.71164 * 14 13 12 17 17 C 1.52993 * 109.47107 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47297 * 179.97438 * 17 16 14 19 19 H 1.09004 * 115.55056 * 330.67354 * 18 17 16 20 20 C 1.52997 * 117.50298 * 185.00183 * 18 17 16 21 21 C 1.52999 * 60.00208 * 252.51031 * 20 18 17 22 22 Cl 1.80298 * 117.50286 * 252.50775 * 21 20 18 23 23 Cl 1.80307 * 117.50012 * 107.48535 * 21 20 18 24 24 C 1.39482 * 120.32969 * 359.70958 * 12 11 10 25 25 C 1.36378 * 120.16994 * 359.97438 * 24 12 11 26 26 H 0.96997 * 119.99897 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.08662 * 359.97438 * 10 9 7 28 28 H 1.08004 * 119.91561 * 180.29234 * 11 10 9 29 29 H 0.96999 * 120.00242 * 215.27251 * 13 12 11 30 30 H 1.08999 * 109.47173 * 300.00083 * 16 14 13 31 31 H 1.09007 * 109.46895 * 60.00044 * 16 14 13 32 32 H 1.08999 * 109.47206 * 300.00104 * 17 16 14 33 33 H 1.08998 * 109.47017 * 60.00069 * 17 16 14 34 34 H 1.09008 * 117.49806 * 359.97438 * 20 18 17 35 35 H 1.08995 * 117.50259 * 145.02447 * 20 18 17 36 36 H 1.08004 * 119.91622 * 179.97438 * 24 12 11 37 37 H 1.07998 * 120.08442 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 1.2778 2.7465 0.0006 5 1 3.0965 1.6965 1.2125 6 1 3.0965 1.6964 -1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0858 -1.2130 -0.0719 9 6 1.3057 -2.4322 0.0957 10 6 1.8675 -3.5198 0.7926 11 6 1.1799 -4.6938 0.8857 12 6 -0.0711 -4.8233 0.2825 13 7 -0.7646 -6.0268 0.3772 14 6 -0.6824 -6.7652 1.5017 15 8 0.0557 -6.4214 2.4004 16 6 -1.5079 -8.0183 1.6423 17 6 -1.2291 -8.6627 3.0016 18 6 -2.0676 -9.9345 3.1447 19 1 -3.0143 -9.9367 2.6044 20 6 -2.0193 -10.6652 4.4880 21 6 -1.3199 -11.2638 3.2660 22 17 -2.0717 -12.7145 2.5039 23 17 0.4821 -11.2117 3.2294 24 6 -0.6310 -3.7528 -0.4146 25 6 0.0418 -2.5704 -0.5107 26 1 -0.4850 0.8400 0.0004 27 1 2.8382 -3.4226 1.2561 28 1 1.6072 -5.5271 1.4238 29 1 -1.3067 -6.3340 -0.3662 30 1 -2.5659 -7.7664 1.5693 31 1 -1.2452 -8.7174 0.8484 32 1 -0.1711 -8.9146 3.0741 33 1 -1.4915 -7.9638 3.7958 34 1 -1.3897 -10.2401 5.2698 35 1 -2.9339 -11.1485 4.8313 36 1 -1.6000 -3.8605 -0.8795 37 1 -0.3933 -1.7423 -1.0505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854271515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:50 Heat of formation + Delta-G solvation = -12.085793 kcal Electronic energy + Delta-G solvation = -21698.362986 eV Core-core repulsion = 18106.614650 eV Total energy + Delta-G solvation = -3591.748335 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.79025 -38.55619 -37.26694 -36.35156 -35.94017 -34.43532 -32.97375 -32.19727 -29.58513 -28.88618 -25.91334 -24.20949 -22.69666 -21.61057 -20.96625 -20.60881 -19.55764 -17.36189 -16.99165 -16.78302 -16.22047 -15.61095 -15.22021 -15.14798 -14.05788 -13.87822 -13.75889 -13.24737 -13.18554 -12.77091 -12.62360 -12.47533 -12.14826 -12.05509 -11.85543 -11.67377 -11.54061 -11.36369 -11.33869 -11.12396 -10.99997 -10.81420 -10.72534 -10.62559 -10.07510 -10.02202 -9.49095 -9.42297 -9.10228 -8.85949 -7.54532 -6.86094 -6.61690 -4.34102 0.85467 1.85572 2.56203 2.81713 3.04215 3.08490 3.09919 3.12143 3.34688 3.63547 3.78540 3.97827 4.02881 4.63759 4.68655 4.71125 5.02397 5.09438 5.14264 5.22760 5.47559 5.53349 5.67235 5.86466 6.09426 6.19319 6.45484 6.76542 6.92635 7.07300 7.21567 7.30185 7.64076 7.75450 7.87718 8.06512 8.27281 8.32010 8.62639 8.76257 8.92927 9.00627 10.29340 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.035546 B = 0.002045 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.518206 B =13688.739214 C =13969.135062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.279 1.279 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.461 4.461 8 H 0.075 0.925 9 C 0.100 3.900 10 C -0.206 4.206 11 C -0.085 4.085 12 C 0.003 3.997 13 N -0.653 5.653 14 C 0.497 3.503 15 O -0.532 6.532 16 C -0.136 4.136 17 C -0.088 4.088 18 C -0.111 4.111 19 H 0.130 0.870 20 C -0.142 4.142 21 C -0.005 4.005 22 Cl -0.101 7.101 23 Cl -0.085 7.085 24 C -0.121 4.121 25 C -0.142 4.142 26 H 0.278 0.722 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.395 0.605 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.091 0.909 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.693 -19.498 4.237 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.093 0.907 9 C 0.097 3.903 10 C -0.226 4.226 11 C -0.105 4.105 12 C -0.089 4.089 13 N -0.296 5.296 14 C 0.284 3.716 15 O -0.409 6.409 16 C -0.176 4.176 17 C -0.126 4.126 18 C -0.130 4.130 19 H 0.148 0.852 20 C -0.180 4.180 21 C -0.057 4.057 22 Cl -0.074 7.074 23 Cl -0.058 7.058 24 C -0.141 4.141 25 C -0.162 4.162 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.229 0.771 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.109 0.891 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.288 -19.208 4.827 21.104 hybrid contribution 0.022 0.409 -0.409 0.579 sum -7.266 -18.799 4.418 20.633 Atomic orbital electron populations 1.69755 1.07274 1.28786 1.38152 1.25882 0.94953 1.01162 0.92571 0.86246 0.79791 0.80104 0.79770 1.20447 1.19104 1.19056 1.19465 0.94700 0.90233 1.44783 0.90661 1.17721 0.92317 0.91984 0.88264 1.20811 1.01122 0.95054 1.05656 1.20396 0.92783 0.97866 0.99453 1.17279 0.94196 0.85931 1.11524 1.43031 1.48781 1.21445 1.16329 1.20537 0.83532 0.85313 0.82208 1.90688 1.39123 1.70912 1.40148 1.21616 1.00979 0.95741 0.99313 1.21159 1.00854 0.93149 0.97397 1.23385 1.00214 0.90279 0.99117 0.85202 1.24015 1.02245 0.99810 0.91894 1.26945 0.82453 0.90035 1.06243 1.98748 1.81373 1.43567 1.83696 1.98761 1.10648 1.97738 1.98648 1.20322 0.98293 0.93184 1.02328 1.21194 0.97286 0.95622 1.02123 0.91108 0.88631 0.87485 0.77115 0.88934 0.89048 0.89206 0.89295 0.85969 0.86164 0.89124 0.85050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.13 10.59 55.55 0.59 -20.54 16 2 C 0.07 1.76 5.42 -17.33 -0.09 1.66 16 3 Si 0.92 19.04 29.56 -169.99 -5.03 14.01 16 4 H -0.28 -5.66 7.11 56.52 0.40 -5.25 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 7 C -0.46 -12.33 9.03 -37.85 -0.34 -12.67 16 8 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 9 C 0.10 2.68 5.55 -106.80 -0.59 2.08 16 10 C -0.21 -5.25 9.74 -39.26 -0.38 -5.63 16 11 C -0.09 -2.04 8.61 -39.79 -0.34 -2.38 16 12 C 0.00 0.07 6.31 -83.57 -0.53 -0.46 16 13 N -0.65 -11.00 5.30 -9.74 -0.05 -11.05 16 14 C 0.50 8.06 7.66 -10.98 -0.08 7.97 16 15 O -0.53 -10.90 13.40 5.56 0.07 -10.83 16 16 C -0.14 -1.41 5.66 -27.88 -0.16 -1.56 16 17 C -0.09 -0.88 4.70 -26.74 -0.13 -1.01 16 18 C -0.11 -0.81 5.58 -90.62 -0.51 -1.32 16 19 H 0.13 0.76 8.07 -51.93 -0.42 0.34 16 20 C -0.14 -0.90 9.93 -26.73 -0.27 -1.17 16 21 C -0.01 -0.04 3.62 -26.73 -0.10 -0.14 16 22 Cl -0.10 -0.86 29.29 -51.86 -1.52 -2.37 16 23 Cl -0.09 -0.87 27.27 -51.86 -1.41 -2.29 16 24 C -0.12 -2.74 9.90 -39.79 -0.39 -3.13 16 25 C -0.14 -3.65 8.61 -39.26 -0.34 -3.99 16 26 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 27 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 28 H 0.11 2.53 6.22 -52.48 -0.33 2.20 16 29 H 0.40 5.11 8.82 -40.82 -0.36 4.75 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 32 H 0.09 1.06 6.02 -51.93 -0.31 0.75 16 33 H 0.09 0.96 8.10 -51.93 -0.42 0.53 16 34 H 0.12 0.75 8.14 -51.92 -0.42 0.32 16 35 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 37 H 0.13 3.48 6.13 -52.49 -0.32 3.16 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -30.41 345.24 -10.64 -41.05 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -4.24 Total: 8.56 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -4.25 Total: -21.74 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.54 Total: -31.59 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -2.93 Total: -4.66 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.41 -10.64 -41.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854271515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.961 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds