Wall clock time and date at job start Tue Mar 31 2020 15:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86803 * 119.99929 * 2 1 4 4 H 1.48497 * 109.47281 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47265 * 119.99871 * 3 2 1 6 6 H 1.48500 * 109.47105 * 240.00000 * 3 2 1 7 7 C 1.39906 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99994 * 175.55701 * 7 2 1 9 9 C 1.41156 * 119.99716 * 355.56316 * 7 2 1 10 10 C 1.40863 * 120.16319 * 214.50800 * 9 7 2 11 11 C 1.36378 * 119.82877 * 179.69004 * 10 9 7 12 12 C 1.39480 * 120.16898 * 0.58701 * 11 10 9 13 13 N 1.39229 * 119.83697 * 179.73455 * 12 11 10 14 14 C 1.34778 * 119.99761 * 35.26420 * 13 12 11 15 15 O 1.21273 * 120.00237 * 355.71396 * 14 13 12 16 16 C 1.50707 * 119.99844 * 175.71164 * 14 13 12 17 17 C 1.52993 * 109.47107 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47297 * 179.97438 * 17 16 14 19 19 H 1.09004 * 115.55056 * 330.67354 * 18 17 16 20 20 C 1.52997 * 117.50298 * 185.00183 * 18 17 16 21 21 C 1.52999 * 60.00208 * 252.51031 * 20 18 17 22 22 Cl 1.80298 * 117.50286 * 252.50775 * 21 20 18 23 23 Cl 1.80307 * 117.50012 * 107.48535 * 21 20 18 24 24 C 1.39482 * 120.32969 * 359.70958 * 12 11 10 25 25 C 1.36378 * 120.16994 * 359.97438 * 24 12 11 26 26 H 0.96997 * 119.99897 * 359.97438 * 1 2 3 27 27 H 1.08005 * 120.08662 * 359.97438 * 10 9 7 28 28 H 1.08004 * 119.91561 * 180.29234 * 11 10 9 29 29 H 0.96999 * 120.00242 * 215.27251 * 13 12 11 30 30 H 1.08999 * 109.47173 * 300.00083 * 16 14 13 31 31 H 1.09007 * 109.46895 * 60.00044 * 16 14 13 32 32 H 1.08999 * 109.47206 * 300.00104 * 17 16 14 33 33 H 1.08998 * 109.47017 * 60.00069 * 17 16 14 34 34 H 1.09008 * 117.49806 * 359.97438 * 20 18 17 35 35 H 1.08995 * 117.50259 * 145.02447 * 20 18 17 36 36 H 1.08004 * 119.91622 * 179.97438 * 24 12 11 37 37 H 1.07998 * 120.08442 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 1.2778 2.7465 0.0006 5 1 3.0965 1.6965 1.2125 6 1 3.0965 1.6964 -1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0858 -1.2130 -0.0719 9 6 1.3057 -2.4322 0.0957 10 6 1.8675 -3.5198 0.7926 11 6 1.1799 -4.6938 0.8857 12 6 -0.0711 -4.8233 0.2825 13 7 -0.7646 -6.0268 0.3772 14 6 -0.6824 -6.7652 1.5017 15 8 0.0557 -6.4214 2.4004 16 6 -1.5079 -8.0183 1.6423 17 6 -1.2291 -8.6627 3.0016 18 6 -2.0676 -9.9345 3.1447 19 1 -3.0143 -9.9367 2.6044 20 6 -2.0193 -10.6652 4.4880 21 6 -1.3199 -11.2638 3.2660 22 17 -2.0717 -12.7145 2.5039 23 17 0.4821 -11.2117 3.2294 24 6 -0.6310 -3.7528 -0.4146 25 6 0.0418 -2.5704 -0.5107 26 1 -0.4850 0.8400 0.0004 27 1 2.8382 -3.4226 1.2561 28 1 1.6072 -5.5271 1.4238 29 1 -1.3067 -6.3340 -0.3662 30 1 -2.5659 -7.7664 1.5693 31 1 -1.2452 -8.7174 0.8484 32 1 -0.1711 -8.9146 3.0741 33 1 -1.4915 -7.9638 3.7958 34 1 -1.3897 -10.2401 5.2698 35 1 -2.9339 -11.1485 4.8313 36 1 -1.6000 -3.8605 -0.8795 37 1 -0.3933 -1.7423 -1.0505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854271515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:49 Heat of formation + Delta-G solvation = -27.988356 kcal Electronic energy + Delta-G solvation = -21699.052572 eV Core-core repulsion = 18106.614650 eV Total energy + Delta-G solvation = -3592.437922 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.20659 -39.40282 -38.86058 -37.00406 -36.64552 -36.11371 -34.69320 -33.16265 -31.47249 -30.69256 -27.35707 -25.59698 -23.33372 -23.24378 -22.53587 -21.51424 -21.01285 -19.26633 -18.32324 -17.82407 -17.38571 -17.00906 -16.61130 -16.07001 -15.74122 -15.23225 -15.00394 -14.59905 -14.43127 -14.01408 -13.90002 -13.59693 -13.59370 -13.25372 -13.16809 -12.89398 -12.77316 -12.69695 -12.54655 -12.46892 -12.19241 -12.05080 -11.78803 -11.57393 -11.38910 -11.26824 -11.19489 -10.77481 -10.67254 -10.50873 -9.46083 -8.71240 -8.50083 -6.32634 0.23199 0.81636 1.14217 1.21959 1.39298 1.47308 1.51226 1.86655 2.23579 2.24641 2.41989 2.81203 3.17323 3.40025 3.66472 3.76671 4.05017 4.24620 4.34320 4.41090 4.49796 4.54364 4.68862 4.74871 4.90026 4.95412 5.07920 5.15208 5.16521 5.33568 5.36557 5.46325 5.70211 5.92772 6.04158 6.15227 6.40225 6.68062 6.78746 6.97018 7.01061 7.46974 8.42407 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.035546 B = 0.002045 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.518206 B =13688.739214 C =13969.135062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.027 3.973 3 Si 0.988 3.012 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.499 4.499 8 H 0.071 0.929 9 C 0.066 3.934 10 C -0.223 4.223 11 C -0.098 4.098 12 C 0.023 3.977 13 N -0.648 5.648 14 C 0.494 3.506 15 O -0.578 6.578 16 C -0.123 4.123 17 C -0.088 4.088 18 C -0.101 4.101 19 H 0.155 0.845 20 C -0.129 4.129 21 C -0.017 4.017 22 Cl -0.102 7.102 23 Cl -0.111 7.111 24 C -0.119 4.119 25 C -0.160 4.160 26 H 0.285 0.715 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.419 0.581 30 H 0.128 0.872 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.126 0.874 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.831 -20.657 4.107 23.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.530 4.530 8 H 0.089 0.911 9 C 0.063 3.937 10 C -0.243 4.243 11 C -0.118 4.118 12 C -0.071 4.071 13 N -0.293 5.293 14 C 0.283 3.717 15 O -0.457 6.457 16 C -0.162 4.162 17 C -0.125 4.125 18 C -0.120 4.120 19 H 0.173 0.827 20 C -0.166 4.166 21 C -0.068 4.068 22 Cl -0.075 7.075 23 Cl -0.084 7.084 24 C -0.139 4.139 25 C -0.180 4.180 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.125 0.875 29 H 0.256 0.744 30 H 0.146 0.854 31 H 0.134 0.866 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.140 0.860 35 H 0.161 0.839 36 H 0.144 0.856 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.458 -20.417 4.674 22.981 hybrid contribution 0.611 0.585 -0.326 0.907 sum -8.847 -19.832 4.348 22.147 Atomic orbital electron populations 1.69817 1.08512 1.30000 1.38562 1.26733 0.95848 1.04263 0.91610 0.85164 0.78518 0.75632 0.79796 1.19144 1.19084 1.18260 1.19688 0.94784 0.91399 1.47123 0.91067 1.18032 0.93478 0.92645 0.89508 1.20933 1.01480 0.95726 1.06181 1.20512 0.93865 0.97351 1.00095 1.17343 0.93341 0.87632 1.08795 1.43017 1.48585 1.19851 1.17862 1.21654 0.82891 0.86249 0.80869 1.90680 1.41147 1.72245 1.41677 1.21660 1.01600 0.92729 1.00207 1.21078 1.00233 0.94234 0.97005 1.23353 1.00221 0.88242 1.00152 0.82722 1.24170 1.02614 0.98525 0.91305 1.27138 0.81134 0.90457 1.08062 1.98749 1.81132 1.43803 1.83862 1.98760 1.13088 1.97806 1.98739 1.20587 0.99323 0.92126 1.01910 1.21190 0.97440 0.96623 1.02774 0.90464 0.88859 0.87536 0.74389 0.85360 0.86566 0.91336 0.90289 0.85971 0.83904 0.85590 0.86336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.59 10.59 21.82 0.23 -44.35 16 2 C 0.03 1.41 5.42 85.24 0.46 1.87 16 3 Si 0.99 39.45 29.56 68.60 2.03 41.48 16 4 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.50 -27.78 9.03 23.39 0.21 -27.57 16 8 H 0.07 3.84 7.85 -2.91 -0.02 3.81 16 9 C 0.07 3.67 5.55 -21.28 -0.12 3.55 16 10 C -0.22 -11.82 9.74 22.48 0.22 -11.60 16 11 C -0.10 -4.77 8.61 22.14 0.19 -4.58 16 12 C 0.02 0.97 6.31 38.57 0.24 1.21 16 13 N -0.65 -20.21 5.30 -303.12 -1.61 -21.82 16 14 C 0.49 14.96 7.66 87.66 0.67 15.63 16 15 O -0.58 -23.46 13.40 -3.01 -0.04 -23.50 16 16 C -0.12 -2.08 5.66 29.85 0.17 -1.91 16 17 C -0.09 -1.55 4.70 30.59 0.14 -1.40 16 18 C -0.10 -1.14 5.58 -10.79 -0.06 -1.20 16 19 H 0.16 1.04 8.07 -2.39 -0.02 1.02 16 20 C -0.13 -1.27 9.93 30.59 0.30 -0.97 16 21 C -0.02 -0.24 3.62 30.59 0.11 -0.13 16 22 Cl -0.10 -1.50 29.29 -2.72 -0.08 -1.58 16 23 Cl -0.11 -2.19 27.27 -2.72 -0.07 -2.26 16 24 C -0.12 -5.29 9.90 22.14 0.22 -5.08 16 25 C -0.16 -8.39 8.61 22.48 0.19 -8.19 16 26 H 0.28 13.72 8.30 -92.71 -0.77 12.95 16 27 H 0.09 4.78 8.06 -2.91 -0.02 4.76 16 28 H 0.11 5.15 6.22 -2.91 -0.02 5.13 16 29 H 0.42 9.24 8.82 -92.71 -0.82 8.42 16 30 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.07 1.54 6.02 -2.39 -0.01 1.53 16 33 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 34 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 37 H 0.12 6.45 6.13 -2.91 -0.02 6.44 16 Total: -1.00 -69.44 345.24 3.71 -65.72 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.30 Total: 26.67 kcal Atomic # 6 Polarization: -43.31 SS G_CDS: 2.96 Total: -40.36 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: -1.38 Total: -66.17 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.04 Total: -23.50 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Atomic # 17 Polarization: -3.69 SS G_CDS: -0.15 Total: -3.85 kcal Total: -69.44 3.71 -65.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854271515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.734 kcal (2) G-P(sol) polarization free energy of solvation -69.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds