Wall clock time and date at job start Tue Mar 31 2020 15:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86804 * 119.99651 * 2 1 4 4 H 1.48499 * 109.47299 * 270.00065 * 3 2 1 5 5 H 1.48501 * 109.47007 * 30.00172 * 3 2 1 6 6 H 1.48504 * 109.46899 * 149.99892 * 3 2 1 7 7 C 1.39894 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00550 * 175.55265 * 7 2 1 9 9 C 1.41161 * 120.00024 * 355.55099 * 7 2 1 10 10 C 1.40865 * 120.16270 * 214.78157 * 9 7 2 11 11 C 1.36371 * 119.82420 * 180.02562 * 10 9 7 12 12 C 1.39488 * 120.17225 * 0.02786 * 11 10 9 13 13 N 1.39238 * 119.83412 * 179.97438 * 12 11 10 14 14 C 1.34772 * 119.99939 * 35.26504 * 13 12 11 15 15 O 1.21285 * 120.00473 * 355.98081 * 14 13 12 16 16 C 1.50700 * 120.00007 * 175.97824 * 14 13 12 17 17 C 1.52999 * 109.47610 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47094 * 179.97438 * 17 16 14 19 19 H 1.08989 * 115.55447 * 330.66948 * 18 17 16 20 20 C 1.53006 * 117.49477 * 116.38447 * 18 17 16 21 21 C 1.53003 * 117.49399 * 185.00317 * 18 17 16 22 22 Cl 1.80304 * 117.50227 * 0.02562 * 21 18 17 23 23 Cl 1.80306 * 117.49738 * 145.02329 * 21 18 17 24 24 C 1.39475 * 120.32787 * 0.22628 * 12 11 10 25 25 C 1.36375 * 120.17455 * 359.48741 * 24 12 11 26 26 H 0.96999 * 120.00171 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.08977 * 0.04321 * 10 9 7 28 28 H 1.08006 * 119.91474 * 180.02562 * 11 10 9 29 29 H 0.97001 * 119.99834 * 215.54179 * 13 12 11 30 30 H 1.08998 * 109.47231 * 300.00374 * 16 14 13 31 31 H 1.09001 * 109.47041 * 59.99896 * 16 14 13 32 32 H 1.08998 * 109.47348 * 300.00571 * 17 16 14 33 33 H 1.09004 * 109.46282 * 60.00070 * 17 16 14 34 34 H 1.08998 * 117.49557 * 214.97435 * 20 18 17 35 35 H 1.08996 * 117.49631 * 0.02562 * 20 18 17 36 36 H 1.08002 * 119.91229 * 179.72490 * 24 12 11 37 37 H 1.07999 * 120.09242 * 180.22889 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0466 -1.4000 5 1 1.4400 2.6527 0.7001 6 1 3.5402 1.4403 0.7001 7 6 2.0083 -1.2115 -0.0005 8 1 3.0859 -1.2129 -0.0731 9 6 1.3058 -2.4322 0.0937 10 6 1.8653 -3.5185 0.7947 11 6 1.1808 -4.6948 0.8810 12 6 -0.0698 -4.8242 0.2770 13 7 -0.7623 -6.0286 0.3691 14 6 -0.6800 -6.7691 1.4922 15 8 0.0538 -6.4236 2.3939 16 6 -1.4999 -8.0262 1.6276 17 6 -1.2222 -8.6725 2.9863 18 6 -2.0551 -9.9485 3.1240 19 1 -3.0000 -9.9540 2.5809 20 6 -1.3013 -11.2745 3.2447 21 6 -2.0072 -10.6819 4.4660 22 17 -0.9743 -9.9759 5.7643 23 17 -3.5183 -11.4897 5.0275 24 6 -0.6278 -3.7547 -0.4232 25 6 0.0421 -2.5702 -0.5132 26 1 -0.4850 0.8400 0.0004 27 1 2.8335 -3.4199 1.2627 28 1 1.6082 -5.5285 1.4184 29 1 -1.3007 -6.3367 -0.3766 30 1 -2.5588 -7.7794 1.5520 31 1 -1.2315 -8.7224 0.8330 32 1 -0.1632 -8.9194 3.0616 33 1 -1.4903 -7.9764 3.7812 34 1 -1.7503 -12.1526 2.7808 35 1 -0.2121 -11.2376 3.2265 36 1 -1.5946 -3.8637 -0.8921 37 1 -0.3929 -1.7418 -1.0526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854271516.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:54 Heat of formation + Delta-G solvation = -12.899104 kcal Electronic energy + Delta-G solvation = -21623.192622 eV Core-core repulsion = 18031.409019 eV Total energy + Delta-G solvation = -3591.783603 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.80445 -38.54286 -37.27902 -36.32590 -35.94299 -34.44650 -32.98299 -32.19277 -29.59609 -28.89445 -25.93600 -24.24916 -22.66068 -21.61058 -20.98224 -20.62968 -19.57348 -17.37265 -16.97686 -16.78396 -16.18278 -15.57708 -15.28694 -15.14770 -14.07599 -13.85996 -13.74450 -13.32137 -13.05858 -12.89542 -12.65733 -12.34467 -12.21177 -12.10255 -11.71415 -11.65410 -11.47703 -11.40321 -11.34626 -11.15284 -11.14257 -10.97351 -10.72534 -10.49233 -10.10381 -9.99983 -9.50042 -9.43067 -9.11421 -8.87127 -7.55503 -6.86967 -6.62195 -4.34745 0.87210 1.86810 2.54623 2.81334 3.01768 3.07865 3.09813 3.13931 3.33305 3.60615 3.84112 3.97306 3.98967 4.62590 4.67249 4.70328 4.98875 5.08864 5.11620 5.22207 5.46188 5.50384 5.66035 5.85364 6.08742 6.18322 6.44049 6.75320 6.91449 7.06543 7.20555 7.29341 7.63242 7.74246 7.86567 8.05867 8.25903 8.31197 8.61976 8.74905 8.92437 8.99718 10.28878 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.029623 B = 0.002015 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.968823 B =13894.292989 C =14207.030752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.099 3.901 10 C -0.206 4.206 11 C -0.085 4.085 12 C 0.003 3.997 13 N -0.653 5.653 14 C 0.496 3.504 15 O -0.530 6.530 16 C -0.135 4.135 17 C -0.080 4.080 18 C -0.111 4.111 19 H 0.130 0.870 20 C -0.143 4.143 21 C -0.004 4.004 22 Cl -0.086 7.086 23 Cl -0.101 7.101 24 C -0.121 4.121 25 C -0.142 4.142 26 H 0.278 0.722 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.395 0.605 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.947 -20.105 2.880 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.097 3.903 10 C -0.226 4.226 11 C -0.105 4.105 12 C -0.089 4.089 13 N -0.296 5.296 14 C 0.283 3.717 15 O -0.407 6.407 16 C -0.176 4.176 17 C -0.117 4.117 18 C -0.130 4.130 19 H 0.148 0.852 20 C -0.181 4.181 21 C -0.055 4.055 22 Cl -0.059 7.059 23 Cl -0.074 7.074 24 C -0.141 4.141 25 C -0.162 4.162 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.229 0.771 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.109 0.891 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.674 -19.702 3.707 21.129 hybrid contribution -0.186 0.588 -0.051 0.619 sum -6.860 -19.114 3.656 20.634 Atomic orbital electron populations 1.69760 1.07281 1.28699 1.38199 1.25880 0.94950 1.01178 0.92582 0.86196 0.80251 0.80492 0.79028 1.19533 1.20304 1.18727 1.19495 0.94725 0.90216 1.44707 0.90624 1.17733 0.92306 0.92017 0.88269 1.20811 1.01242 0.95000 1.05541 1.20392 0.92792 0.97851 0.99490 1.17274 0.94211 0.85943 1.11515 1.43027 1.48984 1.21304 1.16264 1.20538 0.83504 0.85427 0.82255 1.90704 1.39206 1.71001 1.39818 1.21599 1.01158 0.95695 0.99098 1.21043 0.99850 0.93452 0.97380 1.23378 1.02296 0.94343 0.93023 0.85211 1.24095 1.01573 0.98104 0.94291 1.26838 0.88677 1.04858 0.85142 1.98771 1.67633 1.84689 1.54807 1.98748 1.36692 1.80717 1.91258 1.20318 0.98342 0.93189 1.02290 1.21196 0.97307 0.95570 1.02112 0.91151 0.88617 0.87511 0.77130 0.88882 0.88962 0.89927 0.89423 0.86243 0.85998 0.89119 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.12 10.60 55.54 0.59 -20.54 16 2 C 0.07 1.75 5.42 -17.34 -0.09 1.65 16 3 Si 0.92 19.02 29.56 -169.99 -5.03 14.00 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.46 -12.29 9.02 -37.85 -0.34 -12.63 16 8 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 9 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 10 C -0.21 -5.21 9.74 -39.26 -0.38 -5.59 16 11 C -0.09 -2.02 8.61 -39.79 -0.34 -2.37 16 12 C 0.00 0.06 6.30 -83.57 -0.53 -0.47 16 13 N -0.65 -10.76 5.30 -9.74 -0.05 -10.81 16 14 C 0.50 7.86 7.66 -10.99 -0.08 7.78 16 15 O -0.53 -10.81 13.41 5.55 0.07 -10.74 16 16 C -0.14 -1.31 5.66 -27.88 -0.16 -1.47 16 17 C -0.08 -0.79 3.87 -26.73 -0.10 -0.89 16 18 C -0.11 -0.81 5.58 -90.62 -0.51 -1.32 16 19 H 0.13 0.75 8.07 -51.94 -0.42 0.33 16 20 C -0.14 -0.88 9.86 -26.73 -0.26 -1.15 16 21 C 0.00 -0.03 3.62 -26.73 -0.10 -0.13 16 22 Cl -0.09 -0.90 28.23 -51.86 -1.46 -2.37 16 23 Cl -0.10 -0.88 29.29 -51.86 -1.52 -2.40 16 24 C -0.12 -2.72 9.90 -39.79 -0.39 -3.12 16 25 C -0.14 -3.63 8.62 -39.26 -0.34 -3.96 16 26 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 27 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 28 H 0.11 2.49 6.23 -52.48 -0.33 2.16 16 29 H 0.40 4.92 8.82 -40.82 -0.36 4.56 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.90 7.83 -51.93 -0.41 0.49 16 33 H 0.09 1.06 7.98 -51.93 -0.41 0.64 16 34 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.12 0.72 8.03 -51.93 -0.42 0.30 16 36 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.13 3.47 6.13 -52.49 -0.32 3.15 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -30.57 346.90 -10.72 -41.29 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -4.33 Total: 7.93 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -4.22 Total: -21.59 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: 0.54 Total: -31.35 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 14.00 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -2.98 Total: -4.77 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.57 -10.72 -41.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854271516.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.389 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds