Wall clock time and date at job start Tue Mar 31 2020 15:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86804 * 119.99651 * 2 1 4 4 H 1.48499 * 109.47299 * 270.00065 * 3 2 1 5 5 H 1.48501 * 109.47007 * 30.00172 * 3 2 1 6 6 H 1.48504 * 109.46899 * 149.99892 * 3 2 1 7 7 C 1.39894 * 120.00456 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00550 * 175.55265 * 7 2 1 9 9 C 1.41161 * 120.00024 * 355.55099 * 7 2 1 10 10 C 1.40865 * 120.16270 * 214.78157 * 9 7 2 11 11 C 1.36371 * 119.82420 * 180.02562 * 10 9 7 12 12 C 1.39488 * 120.17225 * 0.02786 * 11 10 9 13 13 N 1.39238 * 119.83412 * 179.97438 * 12 11 10 14 14 C 1.34772 * 119.99939 * 35.26504 * 13 12 11 15 15 O 1.21285 * 120.00473 * 355.98081 * 14 13 12 16 16 C 1.50700 * 120.00007 * 175.97824 * 14 13 12 17 17 C 1.52999 * 109.47610 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47094 * 179.97438 * 17 16 14 19 19 H 1.08989 * 115.55447 * 330.66948 * 18 17 16 20 20 C 1.53006 * 117.49477 * 116.38447 * 18 17 16 21 21 C 1.53003 * 117.49399 * 185.00317 * 18 17 16 22 22 Cl 1.80304 * 117.50227 * 0.02562 * 21 18 17 23 23 Cl 1.80306 * 117.49738 * 145.02329 * 21 18 17 24 24 C 1.39475 * 120.32787 * 0.22628 * 12 11 10 25 25 C 1.36375 * 120.17455 * 359.48741 * 24 12 11 26 26 H 0.96999 * 120.00171 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.08977 * 0.04321 * 10 9 7 28 28 H 1.08006 * 119.91474 * 180.02562 * 11 10 9 29 29 H 0.97001 * 119.99834 * 215.54179 * 13 12 11 30 30 H 1.08998 * 109.47231 * 300.00374 * 16 14 13 31 31 H 1.09001 * 109.47041 * 59.99896 * 16 14 13 32 32 H 1.08998 * 109.47348 * 300.00571 * 17 16 14 33 33 H 1.09004 * 109.46282 * 60.00070 * 17 16 14 34 34 H 1.08998 * 117.49557 * 214.97435 * 20 18 17 35 35 H 1.08996 * 117.49631 * 0.02562 * 20 18 17 36 36 H 1.08002 * 119.91229 * 179.72490 * 24 12 11 37 37 H 1.07999 * 120.09242 * 180.22889 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0466 -1.4000 5 1 1.4400 2.6527 0.7001 6 1 3.5402 1.4403 0.7001 7 6 2.0083 -1.2115 -0.0005 8 1 3.0859 -1.2129 -0.0731 9 6 1.3058 -2.4322 0.0937 10 6 1.8653 -3.5185 0.7947 11 6 1.1808 -4.6948 0.8810 12 6 -0.0698 -4.8242 0.2770 13 7 -0.7623 -6.0286 0.3691 14 6 -0.6800 -6.7691 1.4922 15 8 0.0538 -6.4236 2.3939 16 6 -1.4999 -8.0262 1.6276 17 6 -1.2222 -8.6725 2.9863 18 6 -2.0551 -9.9485 3.1240 19 1 -3.0000 -9.9540 2.5809 20 6 -1.3013 -11.2745 3.2447 21 6 -2.0072 -10.6819 4.4660 22 17 -0.9743 -9.9759 5.7643 23 17 -3.5183 -11.4897 5.0275 24 6 -0.6278 -3.7547 -0.4232 25 6 0.0421 -2.5702 -0.5132 26 1 -0.4850 0.8400 0.0004 27 1 2.8335 -3.4199 1.2627 28 1 1.6082 -5.5285 1.4184 29 1 -1.3007 -6.3367 -0.3766 30 1 -2.5588 -7.7794 1.5520 31 1 -1.2315 -8.7224 0.8330 32 1 -0.1632 -8.9194 3.0616 33 1 -1.4903 -7.9764 3.7812 34 1 -1.7503 -12.1526 2.7808 35 1 -0.2121 -11.2376 3.2265 36 1 -1.5946 -3.8637 -0.8921 37 1 -0.3929 -1.7418 -1.0526 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854271516.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:53 Heat of formation + Delta-G solvation = -29.116787 kcal Electronic energy + Delta-G solvation = -21623.895874 eV Core-core repulsion = 18031.409019 eV Total energy + Delta-G solvation = -3592.486855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19856 -39.39088 -38.85381 -36.99374 -36.66476 -36.10969 -34.69014 -33.13647 -31.47090 -30.68875 -27.35900 -25.61171 -23.37964 -23.17675 -22.51690 -21.53417 -21.00286 -19.26651 -18.32473 -17.81965 -17.30301 -16.98600 -16.61385 -16.08607 -15.73076 -15.21421 -15.00055 -14.55730 -14.40580 -14.06882 -13.98600 -13.67330 -13.50339 -13.25333 -12.96097 -12.93700 -12.81862 -12.73531 -12.47565 -12.38124 -12.14623 -12.11149 -11.87131 -11.77771 -11.38732 -11.19989 -11.14773 -10.80289 -10.67780 -10.48257 -9.45731 -8.70773 -8.50101 -6.32685 0.24236 0.81647 1.14473 1.21621 1.39040 1.45238 1.53207 1.87538 2.22136 2.24184 2.45247 2.81325 3.16847 3.41100 3.66816 3.77281 4.04421 4.22724 4.35908 4.41807 4.50451 4.54911 4.70785 4.75597 4.92325 4.95936 5.08326 5.15481 5.17057 5.32851 5.36854 5.46737 5.70497 5.92985 6.04410 6.15649 6.40587 6.68432 6.80097 6.97211 7.01357 7.48730 8.42444 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.029623 B = 0.002015 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.968823 B =13894.292989 C =14207.030752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.027 3.973 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.264 1.264 7 C -0.498 4.498 8 H 0.071 0.929 9 C 0.065 3.935 10 C -0.223 4.223 11 C -0.098 4.098 12 C 0.023 3.977 13 N -0.647 5.647 14 C 0.492 3.508 15 O -0.580 6.580 16 C -0.119 4.119 17 C -0.077 4.077 18 C -0.102 4.102 19 H 0.155 0.845 20 C -0.123 4.123 21 C -0.021 4.021 22 Cl -0.115 7.115 23 Cl -0.105 7.105 24 C -0.120 4.120 25 C -0.160 4.160 26 H 0.284 0.716 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.420 0.580 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.144 0.856 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.585 -21.895 1.766 23.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.529 4.529 8 H 0.089 0.911 9 C 0.062 3.938 10 C -0.243 4.243 11 C -0.118 4.118 12 C -0.070 4.070 13 N -0.292 5.292 14 C 0.282 3.718 15 O -0.460 6.460 16 C -0.159 4.159 17 C -0.115 4.115 18 C -0.120 4.120 19 H 0.173 0.827 20 C -0.160 4.160 21 C -0.072 4.072 22 Cl -0.088 7.088 23 Cl -0.078 7.078 24 C -0.140 4.140 25 C -0.180 4.180 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.257 0.743 30 H 0.142 0.858 31 H 0.150 0.850 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.162 0.838 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.345 -21.542 2.568 23.244 hybrid contribution 0.251 0.948 0.325 1.033 sum -8.094 -20.594 2.893 22.316 Atomic orbital electron populations 1.69823 1.08522 1.29906 1.38745 1.26728 0.95839 1.04276 0.91647 0.85116 0.78645 0.75876 0.79495 1.18324 1.19413 1.18795 1.19707 0.94770 0.91390 1.47071 0.91082 1.18043 0.93482 0.92686 0.89555 1.20937 1.01601 0.95706 1.06043 1.20520 0.93873 0.97342 1.00097 1.17342 0.93330 0.87701 1.08657 1.43005 1.48755 1.19625 1.17843 1.21714 0.82813 0.86464 0.80842 1.90698 1.41410 1.72413 1.41441 1.21632 1.01469 0.92763 1.00004 1.20933 0.99563 0.94252 0.96802 1.23349 1.03036 0.93467 0.92188 0.82708 1.24253 1.01804 0.98201 0.91747 1.27107 0.88860 1.06447 0.84800 1.98768 1.68496 1.85225 1.56320 1.98747 1.36909 1.80705 1.91420 1.20588 0.99365 0.92143 1.01929 1.21191 0.97460 0.96593 1.02774 0.90509 0.88877 0.87411 0.74272 0.85769 0.85014 0.91383 0.92153 0.83765 0.85756 0.85580 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.78 10.60 21.82 0.23 -44.55 16 2 C 0.03 1.39 5.42 85.24 0.46 1.85 16 3 Si 0.99 39.57 29.56 68.60 2.03 41.59 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 6 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 7 C -0.50 -27.73 9.02 23.39 0.21 -27.52 16 8 H 0.07 3.83 7.85 -2.91 -0.02 3.81 16 9 C 0.06 3.60 5.55 -21.27 -0.12 3.48 16 10 C -0.22 -11.74 9.74 22.48 0.22 -11.52 16 11 C -0.10 -4.72 8.61 22.14 0.19 -4.53 16 12 C 0.02 0.99 6.30 38.57 0.24 1.24 16 13 N -0.65 -19.48 5.30 -303.11 -1.61 -21.09 16 14 C 0.49 14.43 7.66 87.66 0.67 15.10 16 15 O -0.58 -23.41 13.41 -3.05 -0.04 -23.45 16 16 C -0.12 -1.82 5.66 29.85 0.17 -1.65 16 17 C -0.08 -1.36 3.87 30.59 0.12 -1.24 16 18 C -0.10 -1.13 5.58 -10.79 -0.06 -1.19 16 19 H 0.16 1.00 8.07 -2.39 -0.02 0.98 16 20 C -0.12 -1.10 9.86 30.60 0.30 -0.80 16 21 C -0.02 -0.31 3.62 30.60 0.11 -0.20 16 22 Cl -0.11 -2.38 28.23 -2.72 -0.08 -2.46 16 23 Cl -0.10 -1.62 29.29 -2.72 -0.08 -1.70 16 24 C -0.12 -5.29 9.90 22.13 0.22 -5.07 16 25 C -0.16 -8.36 8.62 22.48 0.19 -8.16 16 26 H 0.28 13.73 8.30 -92.71 -0.77 12.96 16 27 H 0.09 4.75 8.06 -2.91 -0.02 4.73 16 28 H 0.11 5.11 6.23 -2.91 -0.02 5.10 16 29 H 0.42 8.65 8.82 -92.71 -0.82 7.83 16 30 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.39 7.83 -2.39 -0.02 1.37 16 33 H 0.06 1.41 7.98 -2.39 -0.02 1.39 16 34 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.12 1.12 8.03 -2.39 -0.02 1.10 16 36 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 37 H 0.12 6.42 6.13 -2.91 -0.02 6.40 16 Total: -1.00 -70.89 346.90 3.68 -67.22 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.29 Total: 24.66 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 2.93 Total: -40.22 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -1.38 Total: -65.64 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.04 Total: -23.45 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.59 kcal Atomic # 17 Polarization: -4.00 SS G_CDS: -0.16 Total: -4.16 kcal Total: -70.89 3.68 -67.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854271516.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.099 kcal (2) G-P(sol) polarization free energy of solvation -70.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds