Wall clock time and date at job start Tue Mar 31 2020 15:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 120.00137 * 2 1 4 4 H 1.48498 * 109.47011 * 270.00298 * 3 2 1 5 5 H 1.48502 * 109.47110 * 30.00202 * 3 2 1 6 6 H 1.48500 * 109.47151 * 149.99752 * 3 2 1 7 7 C 1.39926 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00560 * 196.78686 * 7 2 1 9 9 C 1.41408 * 119.99990 * 16.79283 * 7 2 1 10 10 C 1.40783 * 120.20969 * 25.16254 * 9 7 2 11 11 C 1.37638 * 119.88611 * 180.02562 * 10 9 7 12 12 C 1.38539 * 120.32220 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.42645 * 359.95816 * 12 11 10 14 14 N 1.39941 * 119.94307 * 180.02562 * 13 12 11 15 15 C 1.34768 * 120.00177 * 145.79552 * 14 13 12 16 16 O 1.21293 * 120.00007 * 354.88106 * 15 14 13 17 17 C 1.50696 * 120.00402 * 174.88846 * 15 14 13 18 18 C 1.52996 * 109.47520 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47429 * 180.02562 * 18 17 15 20 20 H 1.09008 * 115.54901 * 330.66613 * 19 18 17 21 21 C 1.53004 * 117.50226 * 185.00146 * 19 18 17 22 22 C 1.53001 * 117.50113 * 116.37786 * 19 18 17 23 23 Cl 1.80306 * 117.49569 * 214.98046 * 22 19 18 24 24 Cl 1.80296 * 117.49901 * 359.97438 * 22 19 18 25 25 C 1.38279 * 120.10718 * 0.27514 * 13 12 11 26 26 H 0.97005 * 120.00128 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.05126 * 0.02563 * 10 9 7 28 28 H 1.08001 * 119.84035 * 180.02562 * 11 10 9 29 29 H 1.08003 * 119.78466 * 179.97438 * 12 11 10 30 30 H 0.97004 * 120.00119 * 325.78463 * 14 13 12 31 31 H 1.09001 * 109.47138 * 59.99392 * 17 15 14 32 32 H 1.09002 * 109.46814 * 299.99847 * 17 15 14 33 33 H 1.09002 * 109.47055 * 299.99825 * 18 17 15 34 34 H 1.09001 * 109.47309 * 59.99622 * 18 17 15 35 35 H 1.09007 * 117.49359 * 359.97438 * 21 19 18 36 36 H 1.08989 * 117.50340 * 145.01745 * 21 19 18 37 37 H 1.07993 * 120.16155 * 179.72710 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2118 0.0005 8 1 3.0534 -1.2317 0.2707 9 6 1.3461 -2.4105 -0.3527 10 6 0.2107 -2.3742 -1.1843 11 6 -0.4286 -3.5449 -1.5235 12 6 0.0393 -4.7599 -1.0502 13 6 1.1614 -4.8112 -0.2272 14 7 1.6257 -6.0441 0.2448 15 6 2.9472 -6.2462 0.4147 16 8 3.7400 -5.3947 0.0717 17 6 3.4401 -7.5302 1.0306 18 6 4.9679 -7.5053 1.1080 19 6 5.4684 -8.8092 1.7328 20 1 4.7877 -9.2831 2.4401 21 6 6.9688 -8.9314 2.0061 22 6 6.3326 -9.7236 0.8622 23 17 6.1471 -11.5033 1.0845 24 17 6.6827 -9.1825 -0.8216 25 6 1.8144 -3.6454 0.1287 26 1 -0.4850 0.8401 0.0004 27 1 -0.1580 -1.4293 -1.5553 28 1 -1.2994 -3.5163 -2.1619 29 1 -0.4693 -5.6732 -1.3215 30 1 0.9963 -6.7532 0.4498 31 1 3.1215 -8.3731 0.4174 32 1 3.0268 -7.6340 2.0338 33 1 5.3809 -7.4017 0.1046 34 1 5.2870 -6.6623 1.7210 35 1 7.5995 -8.0829 1.7404 36 1 7.2753 -9.4860 2.8929 37 1 2.6821 -3.6838 0.7705 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854883826.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:16 Heat of formation + Delta-G solvation = -14.314212 kcal Electronic energy + Delta-G solvation = -21866.061075 eV Core-core repulsion = 18274.216108 eV Total energy + Delta-G solvation = -3591.844967 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.79626 -38.53310 -37.17853 -36.33431 -35.91987 -34.44228 -33.04649 -32.24386 -29.81353 -28.27132 -25.38204 -25.03519 -22.67769 -21.55841 -20.90305 -20.67960 -19.50935 -17.72048 -16.83966 -16.70838 -15.66007 -15.56214 -15.25874 -14.93487 -14.56403 -13.91290 -13.75421 -13.28431 -13.13103 -12.87940 -12.71111 -12.54453 -12.25939 -11.94431 -11.76365 -11.64786 -11.52123 -11.34594 -11.16216 -11.13314 -10.90290 -10.80242 -10.61324 -10.45374 -10.15199 -10.04913 -9.64473 -9.39282 -9.06756 -8.94287 -7.44361 -6.90897 -6.70458 -4.33099 0.87206 1.87383 2.60632 2.83532 2.84681 3.09884 3.14606 3.21015 3.37697 3.58177 3.80073 3.96956 4.02634 4.63196 4.65708 4.70538 5.03246 5.10557 5.14760 5.22554 5.48589 5.53045 5.73903 5.87464 6.11291 6.25687 6.40126 6.78131 7.03329 7.06177 7.08114 7.26408 7.57158 7.74035 7.98563 8.10205 8.19291 8.27355 8.63741 8.75364 8.95040 8.99700 10.22514 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.020508 B = 0.002397 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.005818 B =11676.055909 C =12421.917780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.119 3.881 10 C -0.172 4.172 11 C -0.093 4.093 12 C -0.262 4.262 13 C 0.151 3.849 14 N -0.670 5.670 15 C 0.503 3.497 16 O -0.518 6.518 17 C -0.136 4.136 18 C -0.089 4.089 19 C -0.111 4.111 20 H 0.130 0.870 21 C -0.142 4.142 22 C -0.005 4.005 23 Cl -0.101 7.101 24 Cl -0.085 7.085 25 C -0.210 4.210 26 H 0.280 0.720 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.398 0.602 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.680 -17.938 4.757 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.116 3.884 10 C -0.191 4.191 11 C -0.112 4.112 12 C -0.284 4.284 13 C 0.060 3.940 14 N -0.314 5.314 15 C 0.289 3.711 16 O -0.393 6.393 17 C -0.177 4.177 18 C -0.127 4.127 19 C -0.130 4.130 20 H 0.148 0.852 21 C -0.179 4.179 22 C -0.057 4.057 23 Cl -0.074 7.074 24 Cl -0.058 7.058 25 C -0.231 4.231 26 H 0.090 0.910 27 H 0.137 0.863 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.232 0.768 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.099 -17.283 4.432 20.029 hybrid contribution -0.108 0.096 -0.029 0.147 sum 8.992 -17.187 4.403 19.891 Atomic orbital electron populations 1.69827 1.07527 1.29095 1.35678 1.25901 0.94741 1.01272 0.92269 0.86305 0.80511 0.80530 0.79327 1.19277 1.20367 1.18597 1.19582 0.97779 0.90934 1.40502 0.90368 1.17499 0.90893 0.91665 0.88316 1.21351 0.99375 0.96853 1.01570 1.20466 0.98526 0.92742 0.99453 1.20051 1.02479 0.96878 1.08949 1.17440 0.96073 0.83481 0.97045 1.43499 1.07163 1.15156 1.65565 1.20569 0.82451 0.88843 0.79210 1.90760 1.54461 1.45517 1.48521 1.21628 0.96863 0.96603 1.02570 1.21173 0.94198 0.94013 1.03284 1.23376 0.94545 0.96684 0.98373 0.85180 1.24016 0.96423 1.00977 0.96512 1.26948 1.11876 0.82219 0.84637 1.98747 1.97795 1.14503 1.96390 1.98762 1.95171 1.88876 1.22955 1.20950 1.04319 0.90968 1.06911 0.90956 0.86331 0.89080 0.89341 0.76834 0.88947 0.88751 0.89161 0.89170 0.85934 0.86155 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.76 10.94 55.55 0.61 -20.15 16 2 C 0.08 1.93 5.16 -17.35 -0.09 1.84 16 3 Si 0.91 19.12 29.59 -169.99 -5.03 14.09 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.46 -12.59 9.05 -37.74 -0.34 -12.94 16 8 H 0.08 2.12 7.90 -52.49 -0.41 1.70 16 9 C 0.12 3.29 5.57 -106.85 -0.59 2.69 16 10 C -0.17 -4.54 8.69 -38.84 -0.34 -4.87 16 11 C -0.09 -2.18 10.02 -39.69 -0.40 -2.58 16 12 C -0.26 -5.79 9.97 -39.10 -0.39 -6.18 16 13 C 0.15 3.41 6.25 -83.77 -0.52 2.88 16 14 N -0.67 -11.55 5.34 -9.91 -0.05 -11.60 16 15 C 0.50 8.38 7.56 -10.99 -0.08 8.30 16 16 O -0.52 -11.05 13.73 5.55 0.08 -10.98 16 17 C -0.14 -1.44 5.66 -27.89 -0.16 -1.60 16 18 C -0.09 -0.92 4.70 -26.73 -0.13 -1.04 16 19 C -0.11 -0.83 5.58 -90.62 -0.51 -1.34 16 20 H 0.13 0.77 8.08 -51.92 -0.42 0.35 16 21 C -0.14 -0.93 9.94 -26.73 -0.27 -1.20 16 22 C -0.01 -0.05 3.62 -26.73 -0.10 -0.14 16 23 Cl -0.10 -0.87 29.29 -51.86 -1.52 -2.39 16 24 Cl -0.08 -0.89 27.27 -51.86 -1.41 -2.31 16 25 C -0.21 -5.43 8.39 -38.68 -0.32 -5.75 16 26 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 27 H 0.12 3.21 6.17 -52.49 -0.32 2.89 16 28 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 30 H 0.40 5.21 8.82 -40.82 -0.36 4.85 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.10 6.02 -51.93 -0.31 0.79 16 34 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 35 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.12 0.59 8.14 -51.94 -0.42 0.16 16 37 H 0.11 2.77 6.48 -52.49 -0.34 2.43 16 LS Contribution 346.15 15.07 5.22 5.22 Total: -1.00 -31.09 346.15 -10.61 -41.70 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -4.26 Total: 8.35 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -4.23 Total: -21.92 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.55 Total: -31.75 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -2.93 Total: -4.70 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.09 -10.61 -41.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854883826.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.386 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds