Wall clock time and date at job start Tue Mar 31 2020 15:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 120.00137 * 2 1 4 4 H 1.48498 * 109.47011 * 270.00298 * 3 2 1 5 5 H 1.48502 * 109.47110 * 30.00202 * 3 2 1 6 6 H 1.48500 * 109.47151 * 149.99752 * 3 2 1 7 7 C 1.39926 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00560 * 196.78686 * 7 2 1 9 9 C 1.41408 * 119.99990 * 16.79283 * 7 2 1 10 10 C 1.40783 * 120.20969 * 25.16254 * 9 7 2 11 11 C 1.37638 * 119.88611 * 180.02562 * 10 9 7 12 12 C 1.38539 * 120.32220 * 0.02562 * 11 10 9 13 13 C 1.39247 * 120.42645 * 359.95816 * 12 11 10 14 14 N 1.39941 * 119.94307 * 180.02562 * 13 12 11 15 15 C 1.34768 * 120.00177 * 145.79552 * 14 13 12 16 16 O 1.21293 * 120.00007 * 354.88106 * 15 14 13 17 17 C 1.50696 * 120.00402 * 174.88846 * 15 14 13 18 18 C 1.52996 * 109.47520 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47429 * 180.02562 * 18 17 15 20 20 H 1.09008 * 115.54901 * 330.66613 * 19 18 17 21 21 C 1.53004 * 117.50226 * 185.00146 * 19 18 17 22 22 C 1.53001 * 117.50113 * 116.37786 * 19 18 17 23 23 Cl 1.80306 * 117.49569 * 214.98046 * 22 19 18 24 24 Cl 1.80296 * 117.49901 * 359.97438 * 22 19 18 25 25 C 1.38279 * 120.10718 * 0.27514 * 13 12 11 26 26 H 0.97005 * 120.00128 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.05126 * 0.02563 * 10 9 7 28 28 H 1.08001 * 119.84035 * 180.02562 * 11 10 9 29 29 H 1.08003 * 119.78466 * 179.97438 * 12 11 10 30 30 H 0.97004 * 120.00119 * 325.78463 * 14 13 12 31 31 H 1.09001 * 109.47138 * 59.99392 * 17 15 14 32 32 H 1.09002 * 109.46814 * 299.99847 * 17 15 14 33 33 H 1.09002 * 109.47055 * 299.99825 * 18 17 15 34 34 H 1.09001 * 109.47309 * 59.99622 * 18 17 15 35 35 H 1.09007 * 117.49359 * 359.97438 * 21 19 18 36 36 H 1.08989 * 117.50340 * 145.01745 * 21 19 18 37 37 H 1.07993 * 120.16155 * 179.72710 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2118 0.0005 8 1 3.0534 -1.2317 0.2707 9 6 1.3461 -2.4105 -0.3527 10 6 0.2107 -2.3742 -1.1843 11 6 -0.4286 -3.5449 -1.5235 12 6 0.0393 -4.7599 -1.0502 13 6 1.1614 -4.8112 -0.2272 14 7 1.6257 -6.0441 0.2448 15 6 2.9472 -6.2462 0.4147 16 8 3.7400 -5.3947 0.0717 17 6 3.4401 -7.5302 1.0306 18 6 4.9679 -7.5053 1.1080 19 6 5.4684 -8.8092 1.7328 20 1 4.7877 -9.2831 2.4401 21 6 6.9688 -8.9314 2.0061 22 6 6.3326 -9.7236 0.8622 23 17 6.1471 -11.5033 1.0845 24 17 6.6827 -9.1825 -0.8216 25 6 1.8144 -3.6454 0.1287 26 1 -0.4850 0.8401 0.0004 27 1 -0.1580 -1.4293 -1.5553 28 1 -1.2994 -3.5163 -2.1619 29 1 -0.4693 -5.6732 -1.3215 30 1 0.9963 -6.7532 0.4498 31 1 3.1215 -8.3731 0.4174 32 1 3.0268 -7.6340 2.0338 33 1 5.3809 -7.4017 0.1046 34 1 5.2870 -6.6623 1.7210 35 1 7.5995 -8.0829 1.7404 36 1 7.2753 -9.4860 2.8929 37 1 2.6821 -3.6838 0.7705 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854883826.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:16 Heat of formation + Delta-G solvation = -31.291126 kcal Electronic energy + Delta-G solvation = -21866.797249 eV Core-core repulsion = 18274.216108 eV Total energy + Delta-G solvation = -3592.581141 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.22555 -39.37126 -38.81702 -37.00947 -36.64922 -36.16314 -34.80894 -33.20619 -31.74986 -29.96569 -27.27500 -26.16490 -23.25907 -23.14308 -22.65030 -21.52470 -21.01442 -19.50574 -18.05490 -17.59512 -17.28082 -16.88519 -16.59077 -16.40381 -16.05739 -15.17332 -15.13775 -14.64418 -14.57571 -13.99845 -13.86148 -13.69796 -13.49178 -13.25001 -12.97596 -12.91055 -12.77617 -12.74610 -12.56559 -12.20584 -12.18439 -12.06051 -11.94784 -11.59259 -11.50898 -11.29181 -11.14145 -10.85248 -10.72208 -10.56943 -9.39692 -8.74264 -8.59932 -6.37261 0.22361 0.88587 1.00681 1.21391 1.35884 1.48537 1.49368 1.86504 2.20080 2.22499 2.32915 2.73798 3.16607 3.38410 3.67223 3.76435 4.02898 4.23331 4.32200 4.47308 4.48232 4.63651 4.67398 4.71487 4.89094 5.05299 5.06314 5.10450 5.13721 5.27383 5.31781 5.34663 5.77654 5.87569 6.08276 6.11831 6.35392 6.68343 6.70601 6.93948 7.01645 7.40325 8.33058 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.020508 B = 0.002397 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.005818 B =11676.055909 C =12421.917780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.264 1.264 7 C -0.502 4.502 8 H 0.063 0.937 9 C 0.088 3.912 10 C -0.200 4.200 11 C -0.093 4.093 12 C -0.254 4.254 13 C 0.159 3.841 14 N -0.661 5.661 15 C 0.497 3.503 16 O -0.571 6.571 17 C -0.122 4.122 18 C -0.089 4.089 19 C -0.101 4.101 20 H 0.157 0.843 21 C -0.129 4.129 22 C -0.015 4.015 23 Cl -0.101 7.101 24 Cl -0.111 7.111 25 C -0.236 4.236 26 H 0.289 0.711 27 H 0.103 0.897 28 H 0.121 0.879 29 H 0.131 0.869 30 H 0.422 0.578 31 H 0.120 0.880 32 H 0.130 0.870 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.144 0.856 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.117 -19.948 5.639 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.186 1.186 6 H -0.188 1.188 7 C -0.532 4.532 8 H 0.081 0.919 9 C 0.085 3.915 10 C -0.220 4.220 11 C -0.112 4.112 12 C -0.275 4.275 13 C 0.065 3.935 14 N -0.307 5.307 15 C 0.286 3.714 16 O -0.449 6.449 17 C -0.161 4.161 18 C -0.127 4.127 19 C -0.119 4.119 20 H 0.174 0.826 21 C -0.167 4.167 22 C -0.067 4.067 23 Cl -0.074 7.074 24 Cl -0.084 7.084 25 C -0.258 4.258 26 H 0.100 0.900 27 H 0.121 0.879 28 H 0.139 0.861 29 H 0.149 0.851 30 H 0.260 0.740 31 H 0.138 0.862 32 H 0.148 0.852 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.139 0.861 36 H 0.162 0.838 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.510 -19.356 5.329 21.806 hybrid contribution 0.041 0.557 -0.298 0.633 sum 8.550 -18.799 5.031 21.256 Atomic orbital electron populations 1.69859 1.08721 1.30529 1.35714 1.26697 0.95600 1.04232 0.91217 0.85226 0.78970 0.76013 0.79603 1.18593 1.18552 1.18782 1.19732 0.97494 0.92669 1.43261 0.91894 1.17851 0.91915 0.92523 0.89205 1.21310 1.00179 0.97551 1.02962 1.20841 0.98898 0.92310 0.99107 1.20497 1.01794 0.97960 1.07207 1.17532 0.95387 0.84644 0.95909 1.43467 1.08233 1.13905 1.65143 1.21756 0.81555 0.90218 0.77856 1.90752 1.55695 1.47898 1.50537 1.21681 0.96765 0.93392 1.04265 1.21085 0.94163 0.95265 1.02169 1.23341 0.95609 0.94919 0.98068 0.82569 1.24171 0.95749 1.00484 0.96268 1.27122 1.13497 0.82317 0.83720 1.98748 1.97840 1.14580 1.96253 1.98761 1.95351 1.89148 1.25162 1.20927 1.04637 0.92177 1.08040 0.90018 0.87887 0.86075 0.85109 0.73996 0.86181 0.85178 0.91381 0.90456 0.86070 0.83819 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.13 10.94 21.82 0.24 -43.89 16 2 C 0.04 1.98 5.16 85.25 0.44 2.42 16 3 Si 0.98 40.21 29.59 68.60 2.03 42.24 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 7 C -0.50 -29.24 9.05 23.46 0.21 -29.03 16 8 H 0.06 3.68 7.90 -2.91 -0.02 3.66 16 9 C 0.09 5.08 5.57 -21.31 -0.12 4.97 16 10 C -0.20 -10.89 8.69 22.75 0.20 -10.69 16 11 C -0.09 -4.28 10.02 22.20 0.22 -4.06 16 12 C -0.25 -10.65 9.97 22.58 0.23 -10.42 16 13 C 0.16 7.06 6.25 38.10 0.24 7.29 16 14 N -0.66 -21.53 5.34 -303.66 -1.62 -23.15 16 15 C 0.50 16.03 7.56 87.66 0.66 16.69 16 16 O -0.57 -25.06 13.73 -3.07 -0.04 -25.10 16 17 C -0.12 -2.20 5.66 29.85 0.17 -2.04 16 18 C -0.09 -1.70 4.70 30.59 0.14 -1.55 16 19 C -0.10 -1.23 5.58 -10.79 -0.06 -1.29 16 20 H 0.16 1.14 8.08 -2.38 -0.02 1.12 16 21 C -0.13 -1.39 9.94 30.60 0.30 -1.09 16 22 C -0.02 -0.23 3.62 30.60 0.11 -0.12 16 23 Cl -0.10 -1.52 29.29 -2.72 -0.08 -1.60 16 24 Cl -0.11 -2.29 27.27 -2.72 -0.07 -2.36 16 25 C -0.24 -12.69 8.39 22.85 0.19 -12.50 16 26 H 0.29 13.89 8.30 -92.70 -0.77 13.12 16 27 H 0.10 5.81 6.17 -2.91 -0.02 5.80 16 28 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 29 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 30 H 0.42 9.52 8.82 -92.71 -0.82 8.70 16 31 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.64 6.02 -2.39 -0.01 1.63 16 34 H 0.08 1.68 8.10 -2.39 -0.02 1.66 16 35 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 4.82 6.48 -2.91 -0.02 4.80 16 Total: -1.00 -72.94 346.15 3.69 -69.26 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.30 Total: 26.03 kcal Atomic # 6 Polarization: -44.36 SS G_CDS: 2.94 Total: -41.43 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -1.38 Total: -67.03 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.04 Total: -25.10 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Atomic # 17 Polarization: -3.81 SS G_CDS: -0.15 Total: -3.96 kcal Total: -72.94 3.69 -69.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854883826.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.967 kcal (2) G-P(sol) polarization free energy of solvation -72.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds