Wall clock time and date at job start Tue Mar 31 2020 15:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86794 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47609 * 270.00111 * 3 2 1 5 5 H 1.48509 * 109.46971 * 30.00202 * 3 2 1 6 6 H 1.48504 * 109.46906 * 149.99604 * 3 2 1 7 7 C 1.39934 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00488 * 169.00956 * 7 2 1 9 9 C 1.41413 * 119.99783 * 349.00479 * 7 2 1 10 10 C 1.40782 * 120.20970 * 331.76668 * 9 7 2 11 11 C 1.37641 * 119.88268 * 179.97438 * 10 9 7 12 12 C 1.38523 * 120.32613 * 0.02562 * 11 10 9 13 13 C 1.39250 * 120.42874 * 0.02562 * 12 11 10 14 14 N 1.39939 * 119.95172 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00201 * 146.37970 * 14 13 12 16 16 O 1.21289 * 120.00016 * 354.87383 * 15 14 13 17 17 C 1.50699 * 120.00032 * 175.14652 * 15 14 13 18 18 C 1.52997 * 109.47130 * 179.72384 * 17 15 14 19 19 C 1.53004 * 109.47194 * 180.02562 * 18 17 15 20 20 H 1.08995 * 115.55168 * 330.67596 * 19 18 17 21 21 C 1.53000 * 117.49586 * 116.37880 * 19 18 17 22 22 C 1.52998 * 60.00082 * 107.48832 * 21 19 18 23 23 Cl 1.80291 * 117.50069 * 252.50713 * 22 21 19 24 24 Cl 1.80301 * 117.49601 * 107.48579 * 22 21 19 25 25 C 1.38279 * 120.10489 * 0.24129 * 13 12 11 26 26 H 0.96997 * 120.00025 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.05572 * 359.97438 * 10 9 7 28 28 H 1.08007 * 119.83524 * 180.02562 * 11 10 9 29 29 H 1.08006 * 119.79046 * 180.02562 * 12 11 10 30 30 H 0.97000 * 119.99635 * 326.37862 * 14 13 12 31 31 H 1.08998 * 109.47463 * 299.72851 * 17 15 14 32 32 H 1.09007 * 109.47167 * 59.72551 * 17 15 14 33 33 H 1.09004 * 109.47572 * 299.99897 * 18 17 15 34 34 H 1.08997 * 109.47499 * 60.00146 * 18 17 15 35 35 H 1.09004 * 117.49738 * 214.97847 * 21 19 18 36 36 H 1.08996 * 117.50517 * 359.97438 * 21 19 18 37 37 H 1.08000 * 120.16670 * 179.73990 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4899 2.0464 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4400 0.7001 7 6 2.0080 -1.2119 -0.0005 8 1 3.0731 -1.2204 -0.1788 9 6 1.3203 -2.4254 0.2325 10 6 0.1512 -2.4378 1.0167 11 6 -0.5131 -3.6226 1.2388 12 6 -0.0367 -4.8042 0.6947 13 6 1.1190 -4.8074 -0.0821 14 7 1.5917 -6.0068 -0.6263 15 6 2.2052 -6.0068 -1.8263 16 8 2.2654 -4.9847 -2.4766 17 6 2.8109 -7.2781 -2.3629 18 6 3.4333 -7.0073 -3.7341 19 6 4.0477 -8.2981 -4.2792 20 1 4.4068 -9.0017 -3.5282 21 6 3.4495 -8.8782 -5.5624 22 6 4.8255 -8.2101 -5.5938 23 17 4.9480 -6.5932 -6.3820 24 17 6.2656 -9.2785 -5.7822 25 6 1.8035 -3.6281 -0.3120 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2238 -1.5191 1.4432 28 1 -1.4102 -3.6312 1.8402 29 1 -0.5650 -5.7289 0.8742 30 1 1.4778 -6.8382 -0.1398 31 1 3.5814 -7.6311 -1.6775 32 1 2.0350 -8.0376 -2.4597 33 1 2.6628 -6.6544 -4.4197 34 1 4.2091 -6.2478 -3.6374 35 1 3.4149 -9.9637 -5.6556 36 1 2.6180 -8.3406 -6.0181 37 1 2.7023 -3.6301 -0.9108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854883827.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:20 Heat of formation + Delta-G solvation = -14.335486 kcal Electronic energy + Delta-G solvation = -21843.590642 eV Core-core repulsion = 18251.744752 eV Total energy + Delta-G solvation = -3591.845889 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.80393 -38.51100 -37.18409 -36.29552 -35.90768 -34.43307 -33.02706 -32.22915 -29.80277 -28.27397 -25.38082 -25.06295 -22.64991 -21.54273 -20.91220 -20.68933 -19.51383 -17.71384 -16.81741 -16.67947 -15.61935 -15.51885 -15.27918 -14.93708 -14.56485 -13.89553 -13.74245 -13.31562 -13.07156 -12.93745 -12.75092 -12.37856 -12.23179 -12.03102 -11.69945 -11.61401 -11.42956 -11.35628 -11.28031 -11.11023 -11.07696 -10.64390 -10.49227 -10.46130 -10.13747 -10.03586 -9.73461 -9.45473 -9.13296 -8.85302 -7.40837 -6.88577 -6.65006 -4.33271 0.90411 1.90057 2.60722 2.84024 2.85379 3.11216 3.15890 3.20878 3.37089 3.56399 3.84688 3.99068 4.00722 4.62572 4.69286 4.69707 5.00493 5.09981 5.13031 5.23188 5.47388 5.51832 5.72796 5.87310 6.11935 6.24313 6.38451 6.77795 7.02508 7.05585 7.09175 7.28658 7.56616 7.73915 7.98481 8.10529 8.18714 8.28297 8.65191 8.75144 8.96389 8.99903 10.28373 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.002562 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.632954 B =10927.808703 C =12294.546309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.076 0.924 9 C 0.118 3.882 10 C -0.167 4.167 11 C -0.095 4.095 12 C -0.260 4.260 13 C 0.149 3.851 14 N -0.670 5.670 15 C 0.500 3.500 16 O -0.513 6.513 17 C -0.135 4.135 18 C -0.081 4.081 19 C -0.111 4.111 20 H 0.130 0.870 21 C -0.143 4.143 22 C -0.003 4.003 23 Cl -0.085 7.085 24 Cl -0.102 7.102 25 C -0.208 4.208 26 H 0.279 0.721 27 H 0.121 0.879 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.398 0.602 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.202 -18.047 -7.365 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.094 0.906 9 C 0.115 3.885 10 C -0.187 4.187 11 C -0.114 4.114 12 C -0.281 4.281 13 C 0.058 3.942 14 N -0.314 5.314 15 C 0.286 3.714 16 O -0.388 6.388 17 C -0.175 4.175 18 C -0.119 4.119 19 C -0.130 4.130 20 H 0.148 0.852 21 C -0.181 4.181 22 C -0.055 4.055 23 Cl -0.058 7.058 24 Cl -0.075 7.075 25 C -0.229 4.229 26 H 0.090 0.910 27 H 0.139 0.861 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.231 0.769 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.216 -17.105 -7.959 19.864 hybrid contribution 0.369 0.275 0.033 0.461 sum 6.585 -16.831 -7.926 19.734 Atomic orbital electron populations 1.69801 1.07426 1.28926 1.36587 1.25882 0.94830 1.01207 0.92407 0.86273 0.80420 0.80565 0.79199 1.19513 1.20183 1.18548 1.19540 0.95962 0.90415 1.42816 0.90581 1.17518 0.91422 0.91720 0.87820 1.21409 0.98904 0.96630 1.01778 1.20484 0.98350 0.92900 0.99658 1.20055 0.99155 0.97407 1.11503 1.17438 0.94416 0.84849 0.97546 1.43499 1.58319 1.09831 1.19792 1.20585 0.79004 0.90651 0.81148 1.90793 1.56690 1.34122 1.57148 1.21610 1.01557 0.96635 0.97722 1.21060 1.01148 0.94045 0.95623 1.23366 0.98190 1.00858 0.90608 0.85205 1.24094 0.92602 1.02104 0.99303 1.26827 0.88027 0.86131 1.04504 1.98774 1.98124 1.26668 1.82203 1.98746 1.44882 1.65901 1.97933 1.20971 1.03089 0.91919 1.06963 0.91032 0.86092 0.89053 0.89339 0.76864 0.88743 0.88864 0.89848 0.89312 0.86258 0.85979 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.34 10.82 55.55 0.60 -20.74 16 2 C 0.07 1.90 5.25 -17.34 -0.09 1.81 16 3 Si 0.91 19.37 29.57 -169.99 -5.03 14.34 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.46 -12.63 9.06 -37.74 -0.34 -12.97 16 8 H 0.08 2.04 7.87 -52.49 -0.41 1.63 16 9 C 0.12 3.26 5.55 -106.84 -0.59 2.67 16 10 C -0.17 -4.41 8.66 -38.84 -0.34 -4.74 16 11 C -0.09 -2.21 10.01 -39.69 -0.40 -2.61 16 12 C -0.26 -5.66 9.97 -39.10 -0.39 -6.05 16 13 C 0.15 3.32 6.26 -83.76 -0.52 2.80 16 14 N -0.67 -11.29 5.34 -9.91 -0.05 -11.34 16 15 C 0.50 8.24 7.56 -10.99 -0.08 8.15 16 16 O -0.51 -11.13 13.69 5.55 0.08 -11.06 16 17 C -0.13 -1.35 5.66 -27.88 -0.16 -1.51 16 18 C -0.08 -0.84 3.88 -26.73 -0.10 -0.95 16 19 C -0.11 -0.85 5.58 -90.62 -0.51 -1.35 16 20 H 0.13 0.77 8.07 -51.93 -0.42 0.35 16 21 C -0.14 -0.94 9.86 -26.73 -0.26 -1.21 16 22 C 0.00 -0.03 3.62 -26.73 -0.10 -0.13 16 23 Cl -0.08 -0.94 28.23 -51.86 -1.46 -2.40 16 24 Cl -0.10 -0.91 29.29 -51.86 -1.52 -2.43 16 25 C -0.21 -5.36 8.39 -38.68 -0.32 -5.69 16 26 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 27 H 0.12 3.27 6.18 -52.49 -0.32 2.95 16 28 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 29 H 0.09 1.65 8.06 -52.48 -0.42 1.22 16 30 H 0.40 4.95 8.82 -40.82 -0.36 4.59 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.97 7.83 -51.93 -0.41 0.56 16 34 H 0.09 1.11 7.98 -51.93 -0.41 0.70 16 35 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.12 0.78 8.03 -51.93 -0.42 0.37 16 37 H 0.11 2.81 6.44 -52.49 -0.34 2.47 16 LS Contribution 347.64 15.07 5.24 5.24 Total: -1.00 -31.70 347.64 -10.70 -42.39 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.34 Total: 7.76 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: -4.21 Total: -21.77 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.55 Total: -32.08 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -2.98 Total: -4.83 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.70 -10.70 -42.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854883827.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.058 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds