Wall clock time and date at job start Tue Mar 31 2020 15:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86794 * 120.00222 * 2 1 4 4 H 1.48501 * 109.47609 * 270.00111 * 3 2 1 5 5 H 1.48509 * 109.46971 * 30.00202 * 3 2 1 6 6 H 1.48504 * 109.46906 * 149.99604 * 3 2 1 7 7 C 1.39934 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00488 * 169.00956 * 7 2 1 9 9 C 1.41413 * 119.99783 * 349.00479 * 7 2 1 10 10 C 1.40782 * 120.20970 * 331.76668 * 9 7 2 11 11 C 1.37641 * 119.88268 * 179.97438 * 10 9 7 12 12 C 1.38523 * 120.32613 * 0.02562 * 11 10 9 13 13 C 1.39250 * 120.42874 * 0.02562 * 12 11 10 14 14 N 1.39939 * 119.95172 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00201 * 146.37970 * 14 13 12 16 16 O 1.21289 * 120.00016 * 354.87383 * 15 14 13 17 17 C 1.50699 * 120.00032 * 175.14652 * 15 14 13 18 18 C 1.52997 * 109.47130 * 179.72384 * 17 15 14 19 19 C 1.53004 * 109.47194 * 180.02562 * 18 17 15 20 20 H 1.08995 * 115.55168 * 330.67596 * 19 18 17 21 21 C 1.53000 * 117.49586 * 116.37880 * 19 18 17 22 22 C 1.52998 * 60.00082 * 107.48832 * 21 19 18 23 23 Cl 1.80291 * 117.50069 * 252.50713 * 22 21 19 24 24 Cl 1.80301 * 117.49601 * 107.48579 * 22 21 19 25 25 C 1.38279 * 120.10489 * 0.24129 * 13 12 11 26 26 H 0.96997 * 120.00025 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.05572 * 359.97438 * 10 9 7 28 28 H 1.08007 * 119.83524 * 180.02562 * 11 10 9 29 29 H 1.08006 * 119.79046 * 180.02562 * 12 11 10 30 30 H 0.97000 * 119.99635 * 326.37862 * 14 13 12 31 31 H 1.08998 * 109.47463 * 299.72851 * 17 15 14 32 32 H 1.09007 * 109.47167 * 59.72551 * 17 15 14 33 33 H 1.09004 * 109.47572 * 299.99897 * 18 17 15 34 34 H 1.08997 * 109.47499 * 60.00146 * 18 17 15 35 35 H 1.09004 * 117.49738 * 214.97847 * 21 19 18 36 36 H 1.08996 * 117.50517 * 359.97438 * 21 19 18 37 37 H 1.08000 * 120.16670 * 179.73990 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.4899 2.0464 -1.4000 5 1 1.4398 2.6526 0.7001 6 1 3.5399 1.4400 0.7001 7 6 2.0080 -1.2119 -0.0005 8 1 3.0731 -1.2204 -0.1788 9 6 1.3203 -2.4254 0.2325 10 6 0.1512 -2.4378 1.0167 11 6 -0.5131 -3.6226 1.2388 12 6 -0.0367 -4.8042 0.6947 13 6 1.1190 -4.8074 -0.0821 14 7 1.5917 -6.0068 -0.6263 15 6 2.2052 -6.0068 -1.8263 16 8 2.2654 -4.9847 -2.4766 17 6 2.8109 -7.2781 -2.3629 18 6 3.4333 -7.0073 -3.7341 19 6 4.0477 -8.2981 -4.2792 20 1 4.4068 -9.0017 -3.5282 21 6 3.4495 -8.8782 -5.5624 22 6 4.8255 -8.2101 -5.5938 23 17 4.9480 -6.5932 -6.3820 24 17 6.2656 -9.2785 -5.7822 25 6 1.8035 -3.6281 -0.3120 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2238 -1.5191 1.4432 28 1 -1.4102 -3.6312 1.8402 29 1 -0.5650 -5.7289 0.8742 30 1 1.4778 -6.8382 -0.1398 31 1 3.5814 -7.6311 -1.6775 32 1 2.0350 -8.0376 -2.4597 33 1 2.6628 -6.6544 -4.4197 34 1 4.2091 -6.2478 -3.6374 35 1 3.4149 -9.9637 -5.6556 36 1 2.6180 -8.3406 -6.0181 37 1 2.7023 -3.6301 -0.9108 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854883827.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:19 Heat of formation + Delta-G solvation = -32.210310 kcal Electronic energy + Delta-G solvation = -21844.365752 eV Core-core repulsion = 18251.744752 eV Total energy + Delta-G solvation = -3592.621000 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.22285 -39.36075 -38.81348 -37.00132 -36.66920 -36.14973 -34.79343 -33.18117 -31.73855 -29.96033 -27.27376 -26.17725 -23.33666 -23.05142 -22.62790 -21.54572 -21.00290 -19.49764 -18.07294 -17.54586 -17.23153 -16.86017 -16.59339 -16.37335 -16.05555 -15.18519 -15.11810 -14.60804 -14.54726 -14.12145 -13.99319 -13.61243 -13.47623 -13.11325 -13.03775 -12.88799 -12.82888 -12.54829 -12.41550 -12.21987 -12.15444 -12.12982 -11.95307 -11.87513 -11.56458 -11.22650 -11.16735 -10.90761 -10.72103 -10.50819 -9.35559 -8.69583 -8.57321 -6.38759 0.23602 0.89652 1.00482 1.20908 1.34904 1.46328 1.50248 1.87688 2.18478 2.21611 2.37245 2.75977 3.15545 3.39926 3.70675 3.74471 4.01865 4.21174 4.34232 4.47938 4.48874 4.63935 4.69452 4.71794 4.91389 5.05652 5.07468 5.11452 5.14836 5.27514 5.31490 5.35488 5.78481 5.87342 6.08673 6.13135 6.37013 6.69774 6.72268 6.94761 7.01979 7.43297 8.36891 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.002562 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.632954 B =10927.808703 C =12294.546309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.032 3.968 3 Si 0.984 3.016 4 H -0.267 1.267 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.502 4.502 8 H 0.064 0.936 9 C 0.085 3.915 10 C -0.195 4.195 11 C -0.095 4.095 12 C -0.247 4.247 13 C 0.157 3.843 14 N -0.659 5.659 15 C 0.493 3.507 16 O -0.573 6.573 17 C -0.118 4.118 18 C -0.079 4.079 19 C -0.101 4.101 20 H 0.158 0.842 21 C -0.122 4.122 22 C -0.021 4.021 23 Cl -0.117 7.117 24 Cl -0.103 7.103 25 C -0.234 4.234 26 H 0.287 0.713 27 H 0.104 0.896 28 H 0.122 0.878 29 H 0.135 0.865 30 H 0.424 0.576 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.146 0.854 36 H 0.123 0.877 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.629 -21.160 -6.846 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.182 4.182 3 Si 0.804 3.196 4 H -0.192 1.192 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.532 4.532 8 H 0.082 0.918 9 C 0.082 3.918 10 C -0.215 4.215 11 C -0.114 4.114 12 C -0.268 4.268 13 C 0.063 3.937 14 N -0.306 5.306 15 C 0.283 3.717 16 O -0.451 6.451 17 C -0.157 4.157 18 C -0.118 4.118 19 C -0.119 4.119 20 H 0.176 0.824 21 C -0.160 4.160 22 C -0.072 4.072 23 Cl -0.090 7.090 24 Cl -0.076 7.076 25 C -0.256 4.256 26 H 0.097 0.903 27 H 0.122 0.878 28 H 0.140 0.860 29 H 0.152 0.848 30 H 0.262 0.738 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.164 0.836 36 H 0.141 0.859 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.639 -20.291 -7.423 22.330 hybrid contribution 0.508 1.045 -0.140 1.170 sum 6.146 -19.246 -7.563 21.573 Atomic orbital electron populations 1.69854 1.08701 1.30244 1.37142 1.26724 0.95716 1.04336 0.91384 0.85191 0.79092 0.75986 0.79307 1.19204 1.18370 1.18296 1.19748 0.95776 0.92086 1.45619 0.91763 1.17870 0.92530 0.92548 0.88804 1.21362 0.99546 0.97472 1.03095 1.20872 0.98855 0.92358 0.99315 1.20524 0.98321 0.98598 1.09363 1.17524 0.93866 0.85831 0.96451 1.43443 1.57932 1.09049 1.20159 1.21850 0.77527 0.92114 0.80236 1.90787 1.58561 1.37047 1.58725 1.21655 1.03127 0.93539 0.97376 1.20944 0.99974 0.94901 0.95935 1.23339 0.97669 0.99804 0.91119 0.82436 1.24253 0.90817 1.03442 0.97464 1.27097 0.89108 0.85259 1.05742 1.98771 1.98232 1.29138 1.82834 1.98745 1.45331 1.65585 1.97980 1.20938 1.03383 0.93362 1.07891 0.90260 0.87763 0.85962 0.84765 0.73778 0.85395 0.84655 0.91639 0.92282 0.83580 0.85894 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.06 10.82 21.82 0.24 -45.82 16 2 C 0.03 1.71 5.25 85.25 0.45 2.16 16 3 Si 0.98 41.10 29.57 68.60 2.03 43.12 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.50 -29.53 9.06 23.46 0.21 -29.31 16 8 H 0.06 3.74 7.87 -2.91 -0.02 3.71 16 9 C 0.09 4.94 5.55 -21.30 -0.12 4.83 16 10 C -0.19 -10.58 8.66 22.75 0.20 -10.38 16 11 C -0.10 -4.33 10.01 22.20 0.22 -4.11 16 12 C -0.25 -10.11 9.97 22.58 0.23 -9.89 16 13 C 0.16 6.85 6.26 38.10 0.24 7.09 16 14 N -0.66 -20.62 5.34 -303.65 -1.62 -22.24 16 15 C 0.49 15.60 7.56 87.66 0.66 16.26 16 16 O -0.57 -25.64 13.69 -3.06 -0.04 -25.69 16 17 C -0.12 -1.94 5.66 29.85 0.17 -1.77 16 18 C -0.08 -1.54 3.88 30.59 0.12 -1.42 16 19 C -0.10 -1.22 5.58 -10.79 -0.06 -1.29 16 20 H 0.16 1.10 8.07 -2.39 -0.02 1.08 16 21 C -0.12 -1.22 9.86 30.59 0.30 -0.92 16 22 C -0.02 -0.33 3.62 30.59 0.11 -0.22 16 23 Cl -0.12 -2.62 28.23 -2.72 -0.08 -2.70 16 24 Cl -0.10 -1.68 29.29 -2.72 -0.08 -1.76 16 25 C -0.23 -12.57 8.39 22.85 0.19 -12.38 16 26 H 0.29 14.28 8.30 -92.71 -0.77 13.51 16 27 H 0.10 5.91 6.18 -2.91 -0.02 5.89 16 28 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 29 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 30 H 0.42 8.68 8.82 -92.71 -0.82 7.87 16 31 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.14 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.06 1.50 7.83 -2.38 -0.02 1.48 16 34 H 0.06 1.51 7.98 -2.39 -0.02 1.49 16 35 H 0.15 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.12 1.27 8.03 -2.39 -0.02 1.25 16 37 H 0.08 4.79 6.44 -2.91 -0.02 4.77 16 Total: -1.00 -76.27 347.64 3.66 -72.61 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.29 Total: 23.82 kcal Atomic # 6 Polarization: -44.28 SS G_CDS: 2.92 Total: -41.36 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -1.39 Total: -68.06 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.04 Total: -25.69 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.12 kcal Atomic # 17 Polarization: -4.30 SS G_CDS: -0.16 Total: -4.45 kcal Total: -76.27 3.66 -72.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854883827.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.398 kcal (2) G-P(sol) polarization free energy of solvation -76.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds