Wall clock time and date at job start Tue Mar 31 2020 14:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76198 * 100.00071 * 2 1 4 4 C 1.36463 * 125.10714 * 180.02562 * 3 2 1 5 5 C 1.36663 * 114.85420 * 179.74486 * 4 3 2 6 6 C 1.37245 * 114.61385 * 0.50290 * 5 4 3 7 7 C 1.40732 * 125.20920 * 179.78081 * 6 5 4 8 8 C 1.36347 * 119.99924 * 179.72145 * 7 6 5 9 9 C 1.40662 * 119.99952 * 180.02562 * 8 7 6 10 10 O 1.21804 * 119.99842 * 359.97438 * 9 8 7 11 11 O 1.35075 * 120.00163 * 180.02562 * 9 8 7 12 12 C 1.42905 * 117.00320 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.47264 * 179.97438 * 12 11 9 14 14 O 1.21289 * 119.99727 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99773 * 179.97438 * 13 12 11 16 16 C 1.37091 * 119.99763 * 179.97438 * 15 13 12 17 17 H 1.07998 * 120.00286 * 0.02562 * 16 15 13 18 18 C 1.38956 * 120.00028 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00028 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47454 * 59.99812 * 20 18 16 22 22 H 1.48496 * 109.47302 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47261 * 299.99805 * 20 18 16 24 24 S 1.75821 * 125.11092 * 0.02562 * 3 2 1 25 25 H 1.09003 * 109.46830 * 300.00172 * 1 2 3 26 26 H 1.09004 * 109.47120 * 59.99593 * 1 2 3 27 27 H 1.08997 * 109.47599 * 179.97438 * 1 2 3 28 28 H 1.08005 * 122.57393 * 0.04483 * 4 3 2 29 29 H 1.07998 * 122.69290 * 180.30912 * 5 4 3 30 30 H 1.07995 * 120.00031 * 359.72755 * 7 6 5 31 31 H 1.07999 * 120.00193 * 0.02562 * 8 7 6 32 32 H 1.09001 * 109.47103 * 300.00211 * 12 11 9 33 33 H 1.09004 * 109.47054 * 59.99715 * 12 11 9 34 34 H 0.96998 * 120.00166 * 0.02562 * 15 13 12 35 35 H 0.96997 * 119.99770 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.3517 2.3142 -0.0005 5 6 3.3456 3.6808 -0.0059 6 6 2.0954 4.2470 0.0010 7 6 1.8306 5.6292 0.0018 8 6 0.5426 6.0765 0.0032 9 6 0.2779 7.4580 0.0035 10 8 1.1994 8.2546 0.0029 11 8 -0.9980 7.9012 0.0055 12 6 -1.1932 9.3169 0.0062 13 6 -2.6693 9.6206 0.0078 14 8 -3.4749 8.7139 0.0077 15 7 -3.0941 10.8996 0.0092 16 6 -4.4369 11.1759 0.0101 17 1 -5.1543 10.3686 0.0100 18 6 -4.8749 12.4946 0.0110 19 7 -4.0020 13.4769 0.0105 20 14 -6.7046 12.8710 0.0129 21 1 -7.3294 12.2846 1.2257 22 1 -6.9073 14.3420 0.0143 23 1 -7.3317 12.2855 -1.1992 24 16 0.8751 2.9809 0.0006 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 4.2644 1.7368 -0.0017 29 1 4.2519 4.2681 -0.0118 30 1 2.6476 6.3355 0.0012 31 1 -0.2744 5.3702 0.0042 32 1 -0.7324 9.7467 0.8957 33 1 -0.7349 9.7473 -0.8843 34 1 -2.4498 11.6247 0.0088 35 1 -4.3078 14.3974 0.0115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860289610.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:57 Heat of formation + Delta-G solvation = -70.841423 kcal Electronic energy + Delta-G solvation = -20959.856662 eV Core-core repulsion = 17369.647904 eV Total energy + Delta-G solvation = -3590.208758 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.043 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.41623 -38.38843 -38.04815 -36.27896 -34.32522 -33.97346 -31.35963 -30.09603 -29.49183 -28.17890 -25.78451 -24.53283 -22.93963 -20.57366 -19.99904 -19.56739 -18.32035 -18.01023 -17.38411 -16.73062 -16.32498 -16.02450 -15.67544 -15.35532 -14.57270 -14.54618 -14.18979 -14.03392 -14.00690 -13.80917 -13.59462 -13.32582 -12.73058 -12.64940 -12.61641 -12.35280 -11.91997 -11.60309 -11.43417 -11.17486 -11.09440 -10.88375 -10.50365 -10.47517 -10.30385 -10.27054 -9.57515 -9.28715 -9.02441 -8.48743 -8.06008 -7.68476 -6.47824 -3.89765 -0.43513 0.76281 0.84595 1.22311 1.41554 1.88163 2.30891 2.93535 3.12934 3.17128 3.23853 3.29223 3.77078 4.14046 4.49064 4.49660 4.52153 4.75988 4.80900 4.90083 4.96965 5.12253 5.17450 5.26809 5.33616 5.55040 5.62266 5.72562 5.74841 5.97177 6.00452 6.10490 6.67361 7.49471 7.88180 7.99824 8.51437 9.09175 9.42025 9.92353 10.69383 Molecular weight = 327.04amu Principal moments of inertia in cm(-1) A = 0.026683 B = 0.001896 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.092348 B =14767.205043 C =15795.849982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 S -0.031 6.031 3 C -0.206 4.206 4 C -0.124 4.124 5 C -0.075 4.075 6 C -0.195 4.195 7 C 0.033 3.967 8 C -0.203 4.203 9 C 0.499 3.501 10 O -0.521 6.521 11 O -0.319 6.319 12 C 0.059 3.941 13 C 0.439 3.561 14 O -0.577 6.577 15 N -0.553 5.553 16 C -0.303 4.303 17 H 0.105 0.895 18 C 0.024 3.976 19 N -0.897 5.897 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.272 1.272 24 S 0.182 5.818 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.116 0.884 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.135 0.865 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.395 0.605 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.511 -23.918 -0.034 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.336 4.336 2 S 0.208 5.792 3 C -0.437 4.437 4 C -0.161 4.161 5 C -0.108 4.108 6 C -0.316 4.316 7 C 0.013 3.987 8 C -0.225 4.225 9 C 0.347 3.653 10 O -0.414 6.414 11 O -0.233 6.233 12 C -0.019 4.019 13 C 0.224 3.776 14 O -0.461 6.461 15 N -0.190 5.190 16 C -0.432 4.432 17 H 0.123 0.877 18 C -0.178 4.178 19 N -0.538 5.538 20 Si 0.762 3.238 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 S 0.446 5.554 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.134 0.866 28 H 0.165 0.835 29 H 0.170 0.830 30 H 0.170 0.830 31 H 0.152 0.848 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.229 0.771 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.256 -25.177 -0.034 28.933 hybrid contribution 0.251 2.019 0.000 2.035 sum 14.507 -23.158 -0.034 27.326 Atomic orbital electron populations 1.23831 0.94932 1.08071 1.06777 1.85488 1.06257 0.96224 1.91209 1.27165 1.01121 1.02065 1.13363 1.19982 0.96394 0.94165 1.05519 1.20732 0.97021 0.94104 0.98900 1.22254 0.96717 0.96834 1.15803 1.20728 0.97249 0.92028 0.88695 1.21243 0.97550 0.93686 1.10064 1.19571 0.81408 0.90307 0.73975 1.90907 1.45455 1.58040 1.46975 1.86287 1.27909 1.25968 1.83172 1.22351 0.97822 0.78339 1.03364 1.19346 0.88079 0.84336 0.85845 1.90553 1.55241 1.45032 1.55270 1.41696 1.08555 1.04900 1.63868 1.19674 0.82264 0.92985 1.48247 0.87697 1.25315 1.00510 0.95045 0.96941 1.69608 1.34608 0.99921 1.49662 0.85852 0.81710 0.77109 0.79168 1.19777 1.20886 1.19772 1.84398 1.06944 0.93810 1.70231 0.89013 0.89020 0.86586 0.83459 0.82953 0.83040 0.84762 0.89777 0.89782 0.77134 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 9.47 101.05 0.96 0.16 16 2 S -0.03 -0.21 22.88 -107.50 -2.46 -2.67 16 3 C -0.21 -1.68 6.71 30.09 0.20 -1.48 16 4 C -0.12 -0.94 10.15 -40.79 -0.41 -1.35 16 5 C -0.08 -0.57 10.12 -40.51 -0.41 -0.98 16 6 C -0.20 -1.81 6.17 -39.00 -0.24 -2.06 16 7 C 0.03 0.35 9.34 -39.32 -0.37 -0.02 16 8 C -0.20 -2.64 9.42 -39.35 -0.37 -3.01 16 9 C 0.50 8.29 7.66 31.65 0.24 8.54 16 10 O -0.52 -9.29 15.88 -19.50 -0.31 -9.60 16 11 O -0.32 -6.25 9.64 -48.30 -0.47 -6.71 16 12 C 0.06 1.18 5.86 36.01 0.21 1.39 16 13 C 0.44 10.86 7.86 -10.98 -0.09 10.78 16 14 O -0.58 -16.37 16.08 -14.36 -0.23 -16.60 16 15 N -0.55 -14.24 5.29 -10.96 -0.06 -14.30 16 16 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 17 H 0.11 3.05 7.16 -52.49 -0.38 2.67 16 18 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 19 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 20 Si 0.94 20.88 29.55 -169.99 -5.02 15.86 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 24 S 0.18 1.58 20.38 -107.50 -2.19 -0.61 16 25 H 0.09 0.44 8.00 -51.91 -0.42 0.02 16 26 H 0.09 0.44 8.00 -51.91 -0.42 0.02 16 27 H 0.12 0.35 8.14 -51.92 -0.42 -0.08 16 28 H 0.15 0.85 8.06 -52.48 -0.42 0.42 16 29 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 30 H 0.15 1.48 7.46 -52.49 -0.39 1.09 16 31 H 0.13 1.62 7.01 -52.49 -0.37 1.25 16 32 H 0.08 1.52 8.13 -51.93 -0.42 1.10 16 33 H 0.08 1.52 8.13 -51.93 -0.42 1.10 16 34 H 0.40 9.63 7.90 -40.82 -0.32 9.31 16 35 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 346.34 15.07 5.22 5.22 Total: -1.00 -33.28 346.34 -8.85 -42.12 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -3.53 Total: 6.93 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.52 Total: 3.93 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: 0.67 Total: -37.86 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -1.01 Total: -32.92 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -4.65 Total: -3.28 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.28 -8.85 -42.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860289610.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.717 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds