Wall clock time and date at job start Tue Mar 31 2020 14:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80996 * 1 3 3 C 1.76198 * 100.00071 * 2 1 4 4 C 1.36463 * 125.10714 * 180.02562 * 3 2 1 5 5 C 1.36663 * 114.85420 * 179.74486 * 4 3 2 6 6 C 1.37245 * 114.61385 * 0.50290 * 5 4 3 7 7 C 1.40732 * 125.20920 * 179.78081 * 6 5 4 8 8 C 1.36347 * 119.99924 * 179.72145 * 7 6 5 9 9 C 1.40662 * 119.99952 * 180.02562 * 8 7 6 10 10 O 1.21804 * 119.99842 * 359.97438 * 9 8 7 11 11 O 1.35075 * 120.00163 * 180.02562 * 9 8 7 12 12 C 1.42905 * 117.00320 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.47264 * 179.97438 * 12 11 9 14 14 O 1.21289 * 119.99727 * 359.97438 * 13 12 11 15 15 N 1.34775 * 119.99773 * 179.97438 * 13 12 11 16 16 C 1.37091 * 119.99763 * 179.97438 * 15 13 12 17 17 H 1.07998 * 120.00286 * 0.02562 * 16 15 13 18 18 C 1.38956 * 120.00028 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00028 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47454 * 59.99812 * 20 18 16 22 22 H 1.48496 * 109.47302 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47261 * 299.99805 * 20 18 16 24 24 S 1.75821 * 125.11092 * 0.02562 * 3 2 1 25 25 H 1.09003 * 109.46830 * 300.00172 * 1 2 3 26 26 H 1.09004 * 109.47120 * 59.99593 * 1 2 3 27 27 H 1.08997 * 109.47599 * 179.97438 * 1 2 3 28 28 H 1.08005 * 122.57393 * 0.04483 * 4 3 2 29 29 H 1.07998 * 122.69290 * 180.30912 * 5 4 3 30 30 H 1.07995 * 120.00031 * 359.72755 * 7 6 5 31 31 H 1.07999 * 120.00193 * 0.02562 * 8 7 6 32 32 H 1.09001 * 109.47103 * 300.00211 * 12 11 9 33 33 H 1.09004 * 109.47054 * 59.99715 * 12 11 9 34 34 H 0.96998 * 120.00166 * 0.02562 * 15 13 12 35 35 H 0.96997 * 119.99770 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.3517 2.3142 -0.0005 5 6 3.3456 3.6808 -0.0059 6 6 2.0954 4.2470 0.0010 7 6 1.8306 5.6292 0.0018 8 6 0.5426 6.0765 0.0032 9 6 0.2779 7.4580 0.0035 10 8 1.1994 8.2546 0.0029 11 8 -0.9980 7.9012 0.0055 12 6 -1.1932 9.3169 0.0062 13 6 -2.6693 9.6206 0.0078 14 8 -3.4749 8.7139 0.0077 15 7 -3.0941 10.8996 0.0092 16 6 -4.4369 11.1759 0.0101 17 1 -5.1543 10.3686 0.0100 18 6 -4.8749 12.4946 0.0110 19 7 -4.0020 13.4769 0.0105 20 14 -6.7046 12.8710 0.0129 21 1 -7.3294 12.2846 1.2257 22 1 -6.9073 14.3420 0.0143 23 1 -7.3317 12.2855 -1.1992 24 16 0.8751 2.9809 0.0006 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 4.2644 1.7368 -0.0017 29 1 4.2519 4.2681 -0.0118 30 1 2.6476 6.3355 0.0012 31 1 -0.2744 5.3702 0.0042 32 1 -0.7324 9.7467 0.8957 33 1 -0.7349 9.7473 -0.8843 34 1 -2.4498 11.6247 0.0088 35 1 -4.3078 14.3974 0.0115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860289610.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:57 Heat of formation + Delta-G solvation = -90.325077 kcal Electronic energy + Delta-G solvation = -20960.701536 eV Core-core repulsion = 17369.647904 eV Total energy + Delta-G solvation = -3591.053633 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.043 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.76384 -40.09080 -38.94601 -37.68247 -36.04433 -35.21550 -33.42854 -30.96248 -30.17932 -29.48217 -26.97153 -26.12083 -23.90168 -21.47807 -21.39081 -20.95020 -20.09622 -19.19882 -18.43092 -17.92421 -17.77542 -17.39608 -16.84647 -16.38613 -16.14360 -15.79569 -15.72419 -15.06754 -14.83357 -14.72507 -14.43848 -14.24396 -13.96544 -13.95128 -13.56579 -13.40206 -13.29760 -13.13095 -12.94108 -12.49798 -12.12940 -12.09372 -11.92864 -11.80875 -11.80331 -11.57901 -11.41801 -10.52303 -10.13148 -9.99896 -9.69906 -8.52892 -8.31021 -6.03876 -1.22855 0.11974 0.29272 0.39235 0.79083 1.34584 1.37059 1.40725 1.50625 1.54757 1.63241 1.85697 2.11099 2.30876 3.10354 3.12290 3.73994 3.95680 3.97923 4.09973 4.11225 4.15935 4.16101 4.21327 4.26569 4.30296 4.71996 4.77136 4.88357 5.01327 5.13653 5.32773 5.34783 5.37074 5.87900 6.44999 6.66875 7.01601 7.38505 7.92262 8.63906 Molecular weight = 327.04amu Principal moments of inertia in cm(-1) A = 0.026683 B = 0.001896 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.092348 B =14767.205043 C =15795.849982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 S -0.029 6.029 3 C -0.200 4.200 4 C -0.138 4.138 5 C -0.044 4.044 6 C -0.235 4.235 7 C 0.082 3.918 8 C -0.251 4.251 9 C 0.503 3.497 10 O -0.543 6.543 11 O -0.343 6.343 12 C 0.071 3.929 13 C 0.435 3.565 14 O -0.619 6.619 15 N -0.557 5.557 16 C -0.340 4.340 17 H 0.084 0.916 18 C -0.010 4.010 19 N -0.915 5.915 20 Si 1.000 3.000 21 H -0.270 1.270 22 H -0.268 1.268 23 H -0.270 1.270 24 S 0.168 5.832 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.136 0.864 28 H 0.169 0.831 29 H 0.181 0.819 30 H 0.162 0.838 31 H 0.135 0.865 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.400 0.600 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.868 -25.142 -0.038 30.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.337 4.337 2 S 0.211 5.789 3 C -0.431 4.431 4 C -0.174 4.174 5 C -0.077 4.077 6 C -0.356 4.356 7 C 0.062 3.938 8 C -0.273 4.273 9 C 0.354 3.646 10 O -0.438 6.438 11 O -0.259 6.259 12 C -0.006 4.006 13 C 0.222 3.778 14 O -0.506 6.506 15 N -0.194 5.194 16 C -0.469 4.469 17 H 0.102 0.898 18 C -0.211 4.211 19 N -0.554 5.554 20 Si 0.823 3.177 21 H -0.195 1.195 22 H -0.193 1.193 23 H -0.195 1.195 24 S 0.432 5.568 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.155 0.845 28 H 0.187 0.813 29 H 0.198 0.802 30 H 0.179 0.821 31 H 0.153 0.847 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.235 0.765 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 15.638 -26.401 -0.038 30.685 hybrid contribution 0.020 2.089 0.000 2.089 sum 15.657 -24.312 -0.037 28.917 Atomic orbital electron populations 1.23952 0.93355 1.09490 1.06890 1.85529 1.08056 0.94995 1.90340 1.27550 1.01322 1.02823 1.11398 1.20319 0.96978 0.94373 1.05699 1.21130 0.97277 0.94411 0.94916 1.22248 0.97604 0.96291 1.19457 1.20857 0.96365 0.92865 0.83684 1.21030 0.98734 0.91695 1.15866 1.20007 0.80032 0.91373 0.73153 1.90877 1.45339 1.58652 1.48893 1.86279 1.30135 1.25384 1.84078 1.22103 0.94005 0.79430 1.05100 1.20133 0.90056 0.83439 0.84152 1.90512 1.57123 1.46116 1.56891 1.41734 1.08179 1.05552 1.63928 1.19695 0.83076 0.93273 1.50863 0.89794 1.26166 1.05020 0.94274 0.95593 1.69670 1.36409 1.00383 1.48975 0.84888 0.76157 0.77540 0.79145 1.19473 1.19279 1.19463 1.84506 1.07479 0.94286 1.70487 0.88913 0.88919 0.84532 0.81331 0.80173 0.82093 0.84700 0.87922 0.87930 0.76527 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 9.47 113.37 1.07 -0.24 16 2 S -0.03 -0.34 22.88 -56.49 -1.29 -1.63 16 3 C -0.20 -2.83 6.71 67.41 0.45 -2.38 16 4 C -0.14 -1.67 10.15 21.49 0.22 -1.45 16 5 C -0.04 -0.54 10.12 21.67 0.22 -0.32 16 6 C -0.24 -3.99 6.17 22.65 0.14 -3.85 16 7 C 0.08 1.66 9.34 22.44 0.21 1.87 16 8 C -0.25 -6.64 9.42 22.42 0.21 -6.43 16 9 C 0.50 17.07 7.66 68.41 0.52 17.59 16 10 O -0.54 -19.41 15.88 18.84 0.30 -19.12 16 11 O -0.34 -13.86 9.64 -53.50 -0.52 -14.38 16 12 C 0.07 2.88 5.86 71.24 0.42 3.30 16 13 C 0.44 22.24 7.86 87.66 0.69 22.93 16 14 O -0.62 -36.61 16.08 15.98 0.26 -36.35 16 15 N -0.56 -29.44 5.29 -306.99 -1.62 -31.07 16 16 C -0.34 -19.48 9.68 84.04 0.81 -18.67 16 17 H 0.08 5.08 7.16 -2.91 -0.02 5.06 16 18 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 19 N -0.91 -49.21 13.05 21.66 0.28 -48.93 16 20 Si 1.00 42.54 29.55 68.60 2.03 44.57 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 S 0.17 2.77 20.38 -56.49 -1.15 1.62 16 25 H 0.09 0.75 8.00 -2.39 -0.02 0.73 16 26 H 0.09 0.75 8.00 -2.39 -0.02 0.73 16 27 H 0.14 0.51 8.14 -2.40 -0.02 0.49 16 28 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 29 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 30 H 0.16 2.87 7.46 -2.91 -0.02 2.85 16 31 H 0.14 3.43 7.01 -2.91 -0.02 3.41 16 32 H 0.10 3.73 8.13 -2.39 -0.02 3.71 16 33 H 0.10 3.73 8.13 -2.38 -0.02 3.71 16 34 H 0.40 19.92 7.90 -92.71 -0.73 19.18 16 35 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -72.67 346.34 4.13 -68.54 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.41 Total: 24.46 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 5.43 Total: 12.29 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -1.34 Total: -79.99 kcal Atomic # 8 Polarization: -69.89 SS G_CDS: 0.04 Total: -69.85 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -2.44 Total: -0.01 kcal Total: -72.67 4.13 -68.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860289610.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.782 kcal (2) G-P(sol) polarization free energy of solvation -72.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds