Wall clock time and date at job start Tue Mar 31 2020 14:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86795 * 119.99780 * 2 1 4 4 H 1.48494 * 109.47553 * 239.99794 * 3 2 1 5 5 H 1.48504 * 109.47561 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.47044 * 120.00089 * 3 2 1 7 7 C 1.39948 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99623 * 197.85147 * 7 2 1 9 9 C 1.41396 * 120.00206 * 17.85659 * 7 2 1 10 10 C 1.40727 * 120.24309 * 24.38785 * 9 7 2 11 11 C 1.37593 * 119.74506 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.24920 * 359.97438 * 11 10 9 13 13 C 1.38614 * 120.50054 * 359.97438 * 12 11 10 14 14 S 1.76202 * 119.87625 * 180.02562 * 13 12 11 15 15 O 1.42098 * 106.40209 * 336.45493 * 14 13 12 16 16 O 1.42100 * 106.40148 * 203.53394 * 14 13 12 17 17 N 1.65607 * 107.21753 * 89.99866 * 14 13 12 18 18 C 1.47326 * 121.37187 * 89.99894 * 17 14 13 19 19 C 1.53102 * 107.89166 * 118.18469 * 18 17 14 20 20 C 1.49975 * 110.24811 * 45.58121 * 19 18 17 21 21 C 1.29373 * 124.77860 * 340.68470 * 20 19 18 22 22 Cl 1.73602 * 118.26421 * 181.04530 * 21 20 19 23 23 C 1.46999 * 121.36833 * 270.02139 * 17 14 13 24 24 C 1.37645 * 120.24897 * 0.28673 * 13 12 11 25 25 H 0.96998 * 120.00093 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.12993 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.87598 * 179.97438 * 11 10 9 28 28 H 1.08001 * 119.74944 * 180.02562 * 12 11 10 29 29 H 1.09001 * 109.77884 * 358.59281 * 18 17 14 30 30 H 1.09002 * 109.77925 * 237.78267 * 18 17 14 31 31 H 1.09004 * 109.31862 * 165.76779 * 19 18 17 32 32 H 1.08998 * 109.31742 * 285.38764 * 19 18 17 33 33 H 1.08004 * 117.70302 * 160.91415 * 20 19 18 34 34 H 1.09005 * 109.52457 * 342.86520 * 23 17 14 35 35 H 1.09000 * 109.52265 * 102.98682 * 23 17 14 36 36 H 1.07994 * 120.12704 * 179.71019 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2124 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2126 7 6 2.0080 -1.2120 -0.0005 8 1 3.0490 -1.2346 0.2862 9 6 1.3521 -2.4069 -0.3766 10 6 0.2208 -2.3617 -1.2123 11 6 -0.4098 -3.5307 -1.5714 12 6 0.0657 -4.7500 -1.1135 13 6 1.1798 -4.8065 -0.2907 14 16 1.7703 -6.3650 0.2812 15 8 0.6657 -7.2572 0.2269 16 8 2.5014 -6.1048 1.4717 17 7 2.8683 -6.9115 -0.8316 18 6 4.3005 -6.5847 -0.7205 19 6 5.0710 -7.8972 -0.5544 20 6 4.5799 -8.9156 -1.5398 21 6 3.4406 -8.8621 -2.1504 22 17 3.0303 -10.1503 -3.2395 23 6 2.4537 -7.7424 -1.9712 24 6 1.8233 -3.6494 0.0857 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1515 -1.4130 -1.5699 27 1 -1.2784 -3.4984 -2.2124 28 1 -0.4353 -5.6626 -1.4007 29 1 4.4670 -5.9470 0.1478 30 1 4.6333 -6.0734 -1.6238 31 1 6.1326 -7.7159 -0.7223 32 1 4.9255 -8.2752 0.4575 33 1 5.2216 -9.7576 -1.7537 34 1 1.4639 -8.1565 -1.7792 35 1 2.4246 -7.1332 -2.8746 36 1 2.6883 -3.6954 0.7306 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867597833.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:34 Heat of formation + Delta-G solvation = -47.067216 kcal Electronic energy + Delta-G solvation = -23203.786306 eV Core-core repulsion = 19612.564769 eV Total energy + Delta-G solvation = -3591.221537 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.73142 -37.67733 -36.83546 -36.48233 -35.39008 -33.88078 -32.58230 -31.03698 -30.11594 -29.83180 -25.52457 -25.17041 -23.67377 -21.90152 -21.02415 -19.52826 -18.39729 -17.59472 -17.32951 -16.04354 -15.95718 -15.68896 -15.23122 -14.90378 -14.62094 -14.54796 -13.96837 -13.51147 -13.40338 -12.99345 -12.77735 -12.61708 -12.25686 -11.97096 -11.91890 -11.77849 -11.64460 -11.45691 -11.41409 -11.39138 -11.11054 -10.99810 -10.89722 -10.83771 -10.64837 -9.84203 -9.70452 -9.37354 -9.07255 -8.96148 -8.07662 -7.74409 -6.95379 -4.57132 0.80615 1.74363 2.04803 2.15781 2.60577 2.97560 2.99197 3.05281 3.34789 3.80097 4.18569 4.34274 4.40498 4.73399 4.83365 4.94873 5.13147 5.26345 5.29812 5.37870 5.48225 5.60284 5.77871 5.94871 5.99669 6.12016 6.13994 6.34855 6.46260 6.61220 6.72636 6.85894 7.00985 7.17778 7.33789 7.68704 7.76145 7.90385 8.35945 8.63413 8.67838 10.00182 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.020469 B = 0.003433 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.601790 B = 8155.278015 C = 8446.857820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.083 0.917 9 C 0.092 3.908 10 C -0.117 4.117 11 C -0.121 4.121 12 C -0.147 4.147 13 C -0.631 4.631 14 S 2.689 3.311 15 O -0.969 6.969 16 O -0.964 6.964 17 N -1.002 6.002 18 C 0.116 3.884 19 C -0.099 4.099 20 C -0.132 4.132 21 C -0.078 4.078 22 Cl -0.088 7.088 23 C 0.160 3.840 24 C -0.128 4.128 25 H 0.285 0.715 26 H 0.125 0.875 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.694 -10.998 -5.235 14.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.490 4.490 8 H 0.101 0.899 9 C 0.089 3.911 10 C -0.136 4.136 11 C -0.140 4.140 12 C -0.168 4.168 13 C -0.723 4.723 14 S 2.787 3.213 15 O -0.959 6.959 16 O -0.954 6.954 17 N -0.838 5.838 18 C -0.009 4.009 19 C -0.138 4.138 20 C -0.152 4.152 21 C -0.106 4.106 22 Cl -0.060 7.060 23 C 0.035 3.965 24 C -0.149 4.149 25 H 0.096 0.904 26 H 0.143 0.857 27 H 0.117 0.883 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.207 -11.411 -4.523 14.235 hybrid contribution 0.168 1.229 -0.605 1.380 sum 7.375 -10.183 -5.128 13.578 Atomic orbital electron populations 1.69771 1.07690 1.29820 1.34500 1.25944 0.94783 1.01588 0.92023 0.86285 0.80122 0.79774 0.80152 1.18686 1.20220 1.18785 1.19577 0.98386 0.91020 1.40050 0.89937 1.17671 0.91839 0.91998 0.89629 1.21660 0.97501 0.97160 0.97311 1.20817 0.99347 0.93132 1.00710 1.20086 0.97196 0.97492 1.02065 1.29742 1.09165 1.17728 1.15666 1.01780 0.72314 0.74430 0.72758 1.93504 1.51760 1.64331 1.86352 1.93524 1.72600 1.86359 1.42933 1.58068 1.19064 1.64419 1.42248 1.21539 0.78939 0.96478 1.03926 1.20821 1.00335 0.93994 0.98624 1.22019 0.95521 1.00445 0.97172 1.22517 0.98145 0.92500 0.97435 1.98372 1.94237 1.49414 1.63982 1.20208 0.97103 0.89071 0.90150 1.20728 1.01229 0.91706 1.01247 0.90435 0.85697 0.88301 0.87591 0.87932 0.90392 0.89017 0.89387 0.86453 0.87142 0.89248 0.87076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.51 10.95 55.55 0.61 -18.90 16 2 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 3 Si 0.91 17.69 29.59 -169.99 -5.03 12.66 16 4 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.46 -11.57 9.05 -37.74 -0.34 -11.91 16 8 H 0.08 1.96 7.91 -52.48 -0.42 1.55 16 9 C 0.09 2.33 5.57 -106.83 -0.60 1.73 16 10 C -0.12 -2.85 8.70 -38.88 -0.34 -3.19 16 11 C -0.12 -2.66 10.02 -39.66 -0.40 -3.06 16 12 C -0.15 -3.14 9.53 -39.29 -0.37 -3.52 16 13 C -0.63 -13.50 5.97 -39.66 -0.24 -13.74 16 14 S 2.69 49.84 5.75 -107.50 -0.62 49.23 16 15 O -0.97 -19.53 15.92 -57.17 -0.91 -20.44 16 16 O -0.96 -19.61 16.00 -57.17 -0.91 -20.53 16 17 N -1.00 -14.47 3.29 -114.80 -0.38 -14.85 16 18 C 0.12 1.38 6.48 -3.54 -0.02 1.36 16 19 C -0.10 -0.95 6.29 -28.18 -0.18 -1.13 16 20 C -0.13 -1.34 9.47 -35.93 -0.34 -1.68 16 21 C -0.08 -0.90 6.34 -35.76 -0.23 -1.12 16 22 Cl -0.09 -0.96 28.76 -51.86 -1.49 -2.45 16 23 C 0.16 2.06 6.53 -5.10 -0.03 2.03 16 24 C -0.13 -2.99 9.26 -38.87 -0.36 -3.35 16 25 H 0.28 6.36 8.30 -40.82 -0.34 6.03 16 26 H 0.13 3.10 6.15 -52.48 -0.32 2.78 16 27 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 28 H 0.11 2.03 7.60 -52.49 -0.40 1.63 16 29 H 0.10 1.26 7.12 -51.93 -0.37 0.89 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.12 1.01 7.94 -52.48 -0.42 0.59 16 34 H 0.11 1.47 6.98 -51.93 -0.36 1.11 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.11 2.46 7.60 -52.49 -0.40 2.06 16 LS Contribution 330.17 15.07 4.98 4.98 Total: -1.00 -29.32 330.17 -11.23 -40.55 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -3.93 Total: 5.64 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: -3.53 Total: -35.88 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: 0.23 Total: -33.75 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -1.82 Total: -40.97 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Atomic # 16 Polarization: 49.84 SS G_CDS: -0.62 Total: 49.23 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.49 Total: -2.45 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.32 -11.23 -40.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867597833.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.519 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds