Wall clock time and date at job start Tue Mar 31 2020 14:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86796 * 120.00289 * 2 1 4 4 H 1.48501 * 109.46963 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47106 * 299.99829 * 3 2 1 6 6 H 1.48502 * 109.46989 * 60.00418 * 3 2 1 7 7 C 1.39956 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99715 * 196.49959 * 7 2 1 9 9 C 1.41389 * 119.99964 * 16.22545 * 7 2 1 10 10 C 1.40742 * 120.24704 * 22.29623 * 9 7 2 11 11 C 1.37600 * 119.74317 * 179.74514 * 10 9 7 12 12 C 1.38650 * 120.25207 * 0.53386 * 11 10 9 13 13 C 1.38625 * 120.49841 * 359.74052 * 12 11 10 14 14 C 1.37632 * 120.24965 * 359.97438 * 13 12 11 15 15 S 1.76204 * 120.12801 * 179.97438 * 14 13 12 16 16 O 1.42099 * 106.39839 * 1.47175 * 15 14 13 17 17 O 1.42102 * 106.40061 * 134.38680 * 15 14 13 18 18 N 1.65594 * 107.22056 * 247.92779 * 15 14 13 19 19 C 1.47338 * 121.37174 * 263.73817 * 18 15 14 20 20 C 1.53636 * 107.60634 * 118.14507 * 19 18 15 21 21 C 1.49971 * 110.36286 * 45.70983 * 20 19 18 22 22 C 1.29622 * 124.58713 * 340.83742 * 21 20 19 23 23 Cl 1.73599 * 118.18430 * 180.85413 * 22 21 20 24 24 C 1.47003 * 121.37052 * 84.01336 * 18 15 14 25 25 H 0.96998 * 119.99733 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.12213 * 359.97438 * 10 9 7 27 27 H 1.07999 * 119.87109 * 180.29356 * 11 10 9 28 28 H 1.07992 * 119.75536 * 179.76238 * 12 11 10 29 29 H 1.07997 * 119.86905 * 179.97438 * 13 12 11 30 30 H 1.09001 * 109.77396 * 237.76166 * 19 18 15 31 31 H 1.09001 * 109.77588 * 358.56352 * 19 18 15 32 32 H 1.09003 * 109.45201 * 285.36715 * 20 19 18 33 33 H 1.08997 * 109.07129 * 165.81317 * 20 19 18 34 34 H 1.07997 * 117.70507 * 160.86159 * 21 20 19 35 35 H 1.09002 * 109.52647 * 342.88909 * 24 18 15 36 36 H 1.09005 * 109.52475 * 103.01140 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3462 -0.0006 5 1 1.8836 2.3963 -1.2125 6 1 1.8836 2.3963 1.2126 7 6 2.0079 -1.2121 -0.0005 8 1 3.0545 -1.2315 0.2651 9 6 1.3432 -2.4120 -0.3432 10 6 0.1667 -2.3752 -1.1148 11 6 -0.4690 -3.5496 -1.4468 12 6 0.0391 -4.7651 -1.0148 13 6 1.1940 -4.8129 -0.2496 14 6 1.8497 -3.6513 0.0895 15 16 3.3170 -3.7157 1.0629 16 8 3.5783 -5.0915 1.3042 17 8 4.2508 -2.8450 0.4392 18 7 2.9599 -3.0427 2.5332 19 6 3.2597 -1.6296 2.8230 20 6 1.9272 -0.9216 3.1120 21 6 1.0895 -1.7460 4.0435 22 6 1.2565 -3.0137 4.2564 23 17 0.1738 -3.8102 5.3550 24 6 2.3361 -3.8321 3.6050 25 1 -0.4850 0.8401 0.0004 26 1 -0.2335 -1.4291 -1.4481 27 1 -1.3693 -3.5240 -2.0428 28 1 -0.4684 -5.6817 -1.2768 29 1 1.5806 -5.7653 0.0818 30 1 3.9128 -1.5621 3.6931 31 1 3.7443 -1.1711 1.9610 32 1 1.3859 -0.7713 2.1778 33 1 2.1302 0.0461 3.5707 34 1 0.2909 -1.2487 4.5738 35 1 1.9018 -4.7389 3.1840 36 1 3.0893 -4.0993 4.3462 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867598107.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:59 Heat of formation + Delta-G solvation = -58.018203 kcal Electronic energy + Delta-G solvation = -24813.305144 eV Core-core repulsion = 21221.608736 eV Total energy + Delta-G solvation = -3591.696408 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.64329 -39.24621 -38.19418 -37.27688 -36.72302 -35.73928 -33.37964 -32.05942 -31.73337 -31.28389 -27.33006 -26.00420 -24.47590 -23.40538 -22.89167 -20.43911 -19.50352 -19.11400 -18.57830 -17.70290 -17.19335 -16.95719 -16.56475 -16.06163 -15.76491 -15.50094 -15.09052 -14.94180 -14.71500 -14.45653 -13.90387 -13.75545 -13.50699 -13.29129 -13.08880 -13.01984 -12.96918 -12.87785 -12.75149 -12.74194 -12.40003 -12.33600 -12.11906 -11.79758 -11.65356 -11.57056 -11.10464 -10.90481 -9.98826 -9.76898 -9.70077 -9.44660 -8.79556 -6.56575 -0.26752 0.57710 0.99089 1.02995 1.26965 1.41797 1.51060 1.56238 2.17049 2.24176 2.62056 2.98338 3.50910 3.53298 3.74390 4.06460 4.17672 4.32478 4.34618 4.46532 4.50901 4.52261 4.63064 4.75304 4.85719 4.95878 5.05935 5.22321 5.27334 5.33482 5.49750 5.57484 5.61822 5.70044 5.76973 5.89608 6.05646 6.16948 6.56008 6.70398 6.88539 8.13108 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.010291 B = 0.007616 C = 0.006379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.165939 B = 3675.771960 C = 4388.477256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.059 3.941 3 Si 0.946 3.054 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.242 1.242 7 C -0.477 4.477 8 H 0.112 0.888 9 C 0.163 3.837 10 C -0.191 4.191 11 C -0.079 4.079 12 C -0.260 4.260 13 C -0.015 4.015 14 C -0.802 4.802 15 S 2.720 3.280 16 O -1.005 7.005 17 O -0.990 6.990 18 N -0.992 5.992 19 C 0.117 3.883 20 C -0.124 4.124 21 C -0.108 4.108 22 C -0.101 4.101 23 Cl -0.091 7.091 24 C 0.171 3.829 25 H 0.298 0.702 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.776 2.056 8.192 8.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.176 1.176 5 H -0.192 1.192 6 H -0.165 1.165 7 C -0.504 4.504 8 H 0.130 0.870 9 C 0.158 3.842 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.280 4.280 13 C -0.034 4.034 14 C -0.896 4.896 15 S 2.818 3.182 16 O -0.996 6.996 17 O -0.981 6.981 18 N -0.830 5.830 19 C -0.008 4.008 20 C -0.162 4.162 21 C -0.128 4.128 22 C -0.129 4.129 23 Cl -0.063 7.063 24 C 0.045 3.955 25 H 0.109 0.891 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.141 0.859 35 H 0.106 0.894 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.326 1.789 8.095 8.396 hybrid contribution -1.073 0.564 -0.433 1.287 sum 0.253 2.353 7.662 8.019 Atomic orbital electron populations 1.69840 1.08768 1.31493 1.30521 1.26577 0.95206 1.03778 0.90630 0.85663 0.80583 0.76961 0.80237 1.17587 1.19225 1.16548 1.20698 0.99381 0.91488 1.38857 0.86999 1.17286 0.90459 0.90561 0.85861 1.21714 0.99192 0.97693 1.02469 1.21208 0.98196 0.93127 0.97280 1.20808 1.00371 0.97472 1.09330 1.20508 0.93570 0.95677 0.93681 1.30044 1.29139 1.00093 1.30370 1.00451 0.74117 0.71352 0.72232 1.93419 1.85645 1.34738 1.85788 1.93432 1.62128 1.67115 1.75388 1.57732 1.76505 1.20611 1.28104 1.21873 0.97006 0.78671 1.03214 1.21281 0.95963 0.98626 1.00336 1.22166 0.99622 0.93899 0.97072 1.22477 0.96714 0.94687 0.98989 1.98341 1.63712 1.81477 1.62725 1.20182 0.93262 0.92253 0.89800 0.89061 0.86028 0.86534 0.86197 0.86525 0.88137 0.88909 0.88072 0.87613 0.85927 0.89417 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -33.61 10.72 21.83 0.23 -33.37 16 2 C 0.06 2.48 3.58 85.26 0.31 2.78 16 3 Si 0.95 31.88 29.59 68.60 2.03 33.91 16 4 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 5 H -0.27 -9.02 7.11 99.48 0.71 -8.32 16 6 H -0.24 -7.23 7.11 99.48 0.71 -6.52 16 7 C -0.48 -22.04 5.79 23.46 0.14 -21.90 16 8 H 0.11 5.19 3.44 -2.91 -0.01 5.18 16 9 C 0.16 8.02 5.60 -21.29 -0.12 7.91 16 10 C -0.19 -9.26 8.72 22.73 0.20 -9.07 16 11 C -0.08 -3.50 10.02 22.22 0.22 -3.28 16 12 C -0.26 -11.17 10.05 22.46 0.23 -10.94 16 13 C -0.01 -0.66 9.53 22.22 0.21 -0.45 16 14 C -0.80 -37.85 5.97 22.73 0.14 -37.71 16 15 S 2.72 116.73 5.11 -56.49 -0.29 116.44 16 16 O -1.01 -44.79 16.15 -128.00 -2.07 -46.86 16 17 O -0.99 -46.26 14.31 -128.00 -1.83 -48.10 16 18 N -0.99 -34.98 3.29 -516.11 -1.70 -36.67 16 19 C 0.12 3.61 5.65 86.43 0.49 4.10 16 20 C -0.12 -3.76 6.16 29.83 0.18 -3.57 16 21 C -0.11 -3.17 9.48 26.83 0.25 -2.92 16 22 C -0.10 -2.99 6.34 26.94 0.17 -2.81 16 23 Cl -0.09 -2.46 28.76 -2.72 -0.08 -2.54 16 24 C 0.17 5.25 6.28 85.42 0.54 5.79 16 25 H 0.30 11.38 8.30 -92.71 -0.77 10.61 16 26 H 0.12 5.95 5.93 -2.91 -0.02 5.93 16 27 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 28 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 29 H 0.12 4.88 7.32 -2.91 -0.02 4.86 16 30 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.09 3.14 5.30 -2.39 -0.01 3.13 16 32 H 0.10 3.76 4.40 -2.39 -0.01 3.75 16 33 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.12 3.26 7.95 -2.91 -0.02 3.23 16 35 H 0.09 2.84 7.65 -2.39 -0.02 2.82 16 36 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 Total: -1.00 -56.63 313.28 0.39 -56.24 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 1.13 Total: 33.02 kcal Atomic # 6 Polarization: -75.03 SS G_CDS: 2.95 Total: -72.08 kcal Atomic # 7 Polarization: -68.58 SS G_CDS: -1.46 Total: -70.05 kcal Atomic # 8 Polarization: -91.06 SS G_CDS: -3.90 Total: -94.95 kcal Atomic # 14 Polarization: 31.88 SS G_CDS: 2.03 Total: 33.91 kcal Atomic # 16 Polarization: 116.73 SS G_CDS: -0.29 Total: 116.44 kcal Atomic # 17 Polarization: -2.46 SS G_CDS: -0.08 Total: -2.54 kcal Total: -56.63 0.39 -56.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867598107.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.779 kcal (2) G-P(sol) polarization free energy of solvation -56.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds