Wall clock time and date at job start Tue Mar 31 2020 15:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 115.54802 * 2 1 4 4 N 1.46501 * 109.47116 * 60.98137 * 3 2 1 5 5 C 1.34776 * 120.00495 * 175.64778 * 4 3 2 6 6 O 1.21608 * 119.99418 * 0.02562 * 5 4 3 7 7 C 1.47430 * 120.00284 * 180.02562 * 5 4 3 8 8 C 1.39223 * 120.28279 * 4.34733 * 7 5 4 9 9 C 1.38221 * 120.09440 * 179.97438 * 8 7 5 10 10 C 1.38826 * 120.67099 * 0.02562 * 9 8 7 11 11 C 1.37594 * 120.57262 * 359.97438 * 10 9 8 12 12 C 1.40702 * 119.88216 * 359.97438 * 11 10 9 13 13 C 1.40897 * 120.32789 * 180.02562 * 12 11 10 14 14 H 1.07992 * 120.00007 * 146.64500 * 13 12 11 15 15 C 1.40279 * 119.99813 * 326.64938 * 13 12 11 16 16 N 1.30628 * 120.00133 * 351.15369 * 15 13 12 17 17 Si 1.86799 * 119.99888 * 171.16276 * 15 13 12 18 18 H 1.48493 * 109.47235 * 59.99746 * 17 15 13 19 19 H 1.48502 * 109.47034 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46643 * 299.99551 * 17 15 13 21 21 C 1.53003 * 117.50111 * 214.33709 * 2 1 3 22 22 C 1.52999 * 117.50444 * 145.67438 * 2 1 3 23 23 Cl 1.80300 * 117.49927 * 215.00191 * 22 2 1 24 24 Cl 1.80298 * 117.49787 * 0.02562 * 22 2 1 25 25 H 1.08993 * 109.47781 * 57.19827 * 1 2 3 26 26 H 1.09001 * 109.46805 * 177.19536 * 1 2 3 27 27 H 1.09007 * 109.46854 * 297.18973 * 1 2 3 28 28 H 1.09004 * 109.47452 * 300.98485 * 3 2 1 29 29 H 1.09003 * 109.47583 * 180.97891 * 3 2 1 30 30 H 0.97003 * 119.99930 * 355.65336 * 4 3 2 31 31 H 1.08001 * 119.95499 * 359.97438 * 8 7 5 32 32 H 1.08000 * 119.66195 * 180.02562 * 9 8 7 33 33 H 1.07999 * 119.70976 * 180.26986 * 10 9 8 34 34 H 1.08001 * 120.05539 * 180.02562 * 11 10 9 35 35 H 0.96994 * 120.00484 * 180.02562 * 16 15 13 36 36 H 1.09002 * 117.49585 * 359.96911 * 21 2 1 37 37 H 1.08997 * 117.49962 * 144.99232 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 7 1.7959 2.1100 1.2078 5 6 2.3275 3.3210 1.4672 6 8 3.1339 3.8082 0.6984 7 6 1.9315 4.0548 2.6830 8 6 1.0789 3.4654 3.6124 9 6 0.7105 4.1568 4.7512 10 6 1.1822 5.4417 4.9832 11 6 2.0262 6.0505 4.0831 12 6 2.4172 5.3680 2.9165 13 6 3.2815 5.9823 1.9887 14 1 3.9895 5.3855 1.4331 15 6 3.2222 7.3693 1.7867 16 7 2.2574 8.0669 2.3242 17 14 4.5228 8.2184 0.7490 18 1 4.5057 7.6547 -0.6247 19 1 4.2359 9.6742 0.6898 20 1 5.8602 8.0012 1.3566 21 6 2.2365 -1.1206 -0.7655 22 6 2.2366 -1.1207 0.7652 23 17 3.7830 -0.7136 1.5981 24 17 1.2025 -2.3409 1.5975 25 1 -0.3634 0.5567 -0.8637 26 1 -0.3633 -1.0265 -0.0503 27 1 -0.3633 0.4696 0.9142 28 1 1.8692 1.9364 -0.8810 29 1 3.2736 1.2652 -0.0176 30 1 1.1525 1.7214 1.8210 31 1 0.7047 2.4665 3.4434 32 1 0.0490 3.6926 5.4678 33 1 0.8879 5.9660 5.8803 34 1 2.3884 7.0503 4.2722 35 1 2.2162 9.0258 2.1842 36 1 1.6112 -1.8582 -1.2687 37 1 3.1713 -0.8745 -1.2690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868702758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:21 Heat of formation + Delta-G solvation = -6.433817 kcal Electronic energy + Delta-G solvation = -22946.687021 eV Core-core repulsion = 19355.183773 eV Total energy + Delta-G solvation = -3591.503247 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.47490 -38.40408 -36.71629 -36.15227 -35.90638 -33.90053 -33.19387 -30.05157 -29.61015 -28.79967 -26.58856 -25.16315 -22.62980 -22.08206 -20.85728 -19.65311 -19.26137 -17.55729 -16.74449 -16.19988 -15.42239 -15.25980 -14.91595 -14.35301 -14.18417 -13.72588 -13.65171 -13.36820 -13.02877 -12.74437 -12.68877 -12.49737 -12.21786 -12.10854 -11.69190 -11.64222 -11.51244 -11.28850 -11.10087 -10.99229 -10.81994 -10.65619 -10.53329 -10.40021 -10.09581 -9.81858 -9.66898 -9.24970 -8.39244 -8.33141 -7.56125 -7.33648 -6.78782 -4.38320 1.03570 2.03577 2.38416 2.84479 2.85492 3.09696 3.16020 3.26504 3.77887 3.85751 3.98209 4.19372 4.30219 4.58250 4.68931 4.72623 5.19349 5.32997 5.51050 5.55497 5.64373 5.81341 5.84373 5.96785 6.01540 6.20644 6.32139 6.63584 6.97914 7.06160 7.17186 7.24606 7.49108 7.65232 7.91618 8.01073 8.20673 8.37729 8.69309 8.85777 8.92530 9.43001 10.15882 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016455 B = 0.003707 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.168413 B = 7551.358636 C = 8410.001734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 C 0.157 3.843 4 N -0.742 5.742 5 C 0.568 3.432 6 O -0.540 6.540 7 C -0.262 4.262 8 C -0.055 4.055 9 C -0.246 4.246 10 C -0.096 4.096 11 C -0.148 4.148 12 C 0.146 3.854 13 C -0.421 4.421 14 H 0.112 0.888 15 C 0.069 3.931 16 N -0.793 5.793 17 Si 0.917 3.083 18 H -0.262 1.262 19 H -0.280 1.280 20 H -0.263 1.263 21 C -0.132 4.132 22 C 0.003 3.997 23 Cl -0.080 7.080 24 Cl -0.098 7.098 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.392 0.608 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.282 0.718 36 H 0.122 0.878 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.755 -15.460 -4.647 16.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.103 4.103 3 C 0.033 3.967 4 N -0.398 5.398 5 C 0.363 3.637 6 O -0.419 6.419 7 C -0.267 4.267 8 C -0.074 4.074 9 C -0.265 4.265 10 C -0.115 4.115 11 C -0.167 4.167 12 C 0.142 3.858 13 C -0.449 4.449 14 H 0.130 0.870 15 C -0.150 4.150 16 N -0.418 5.418 17 Si 0.741 3.259 18 H -0.187 1.187 19 H -0.205 1.205 20 H -0.187 1.187 21 C -0.170 4.170 22 C -0.049 4.049 23 Cl -0.053 7.053 24 Cl -0.071 7.071 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.227 0.773 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.093 0.907 36 H 0.140 0.860 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.206 -14.914 -5.068 15.905 hybrid contribution 0.070 0.057 0.125 0.154 sum -2.136 -14.857 -4.943 15.803 Atomic orbital electron populations 1.21455 0.89694 1.03043 1.03704 1.22708 0.96973 0.91652 0.98971 1.20704 0.99063 0.87051 0.89889 1.45869 1.48620 1.20261 1.25021 1.18368 0.80073 0.79249 0.86021 1.90642 1.34439 1.66842 1.49971 1.19407 1.10232 0.99642 0.97406 1.20629 0.95895 0.96691 0.94220 1.20276 1.09135 0.96918 1.00178 1.20798 0.97847 0.94770 0.98096 1.21382 1.01093 1.00371 0.93872 1.17476 0.88378 0.89044 0.90951 1.20357 1.15565 0.91557 1.17438 0.87040 1.26170 0.95574 0.97802 0.95411 1.69714 1.27650 1.08747 1.35692 0.86209 0.81212 0.77401 0.81037 1.18655 1.20510 1.18743 1.24068 1.03877 0.99786 0.89317 1.26966 0.88334 0.97846 0.91704 1.98779 1.32272 1.93253 1.81011 1.98735 1.68297 1.58633 1.81415 0.90461 0.91370 0.90882 0.90730 0.90810 0.77277 0.89398 0.89174 0.89158 0.86384 0.90699 0.85964 0.85926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.01 37.16 0.33 -0.76 16 2 C -0.10 -1.05 2.21 -154.51 -0.34 -1.39 16 3 C 0.16 2.21 5.04 -4.04 -0.02 2.19 16 4 N -0.74 -12.68 5.40 -61.38 -0.33 -13.01 16 5 C 0.57 12.86 7.73 -12.52 -0.10 12.77 16 6 O -0.54 -13.88 13.49 5.27 0.07 -13.81 16 7 C -0.26 -6.36 5.92 -104.37 -0.62 -6.97 16 8 C -0.06 -1.18 9.52 -39.22 -0.37 -1.56 16 9 C -0.25 -5.25 10.03 -39.37 -0.39 -5.64 16 10 C -0.10 -2.18 10.01 -39.60 -0.40 -2.58 16 11 C -0.15 -3.77 8.62 -38.89 -0.34 -4.10 16 12 C 0.15 3.90 5.52 -106.54 -0.59 3.31 16 13 C -0.42 -11.54 7.86 -37.81 -0.30 -11.84 16 14 H 0.11 3.17 5.62 -52.49 -0.29 2.87 16 15 C 0.07 1.76 5.26 -17.30 -0.09 1.67 16 16 N -0.79 -20.45 11.06 55.56 0.61 -19.84 16 17 Si 0.92 19.61 29.57 -169.99 -5.03 14.58 16 18 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 21 C -0.13 -1.08 9.62 -26.69 -0.26 -1.34 16 22 C 0.00 0.03 3.61 -26.69 -0.10 -0.06 16 23 Cl -0.08 -1.05 27.70 -51.86 -1.44 -2.49 16 24 Cl -0.10 -1.02 27.74 -51.86 -1.44 -2.45 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.53 7.15 -51.93 -0.37 0.16 16 27 H 0.07 0.71 7.38 -51.93 -0.38 0.32 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.12 7.07 -51.93 -0.37 0.76 16 30 H 0.39 6.03 5.70 -40.82 -0.23 5.80 16 31 H 0.09 1.57 6.42 -52.49 -0.34 1.23 16 32 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 33 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.12 3.07 6.52 -52.49 -0.34 2.73 16 35 H 0.28 6.64 8.29 -40.82 -0.34 6.30 16 36 H 0.12 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 339.08 15.07 5.11 5.11 Total: -1.00 -29.45 339.08 -10.01 -39.45 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -4.00 Total: 8.76 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -3.57 Total: -16.31 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.28 Total: -32.85 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.07 Total: -13.81 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -2.87 Total: -4.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.45 -10.01 -39.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868702758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.020 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds