Wall clock time and date at job start Tue Mar 31 2020 15:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 115.54802 * 2 1 4 4 N 1.46501 * 109.47116 * 60.98137 * 3 2 1 5 5 C 1.34776 * 120.00495 * 175.64778 * 4 3 2 6 6 O 1.21608 * 119.99418 * 0.02562 * 5 4 3 7 7 C 1.47430 * 120.00284 * 180.02562 * 5 4 3 8 8 C 1.39223 * 120.28279 * 4.34733 * 7 5 4 9 9 C 1.38221 * 120.09440 * 179.97438 * 8 7 5 10 10 C 1.38826 * 120.67099 * 0.02562 * 9 8 7 11 11 C 1.37594 * 120.57262 * 359.97438 * 10 9 8 12 12 C 1.40702 * 119.88216 * 359.97438 * 11 10 9 13 13 C 1.40897 * 120.32789 * 180.02562 * 12 11 10 14 14 H 1.07992 * 120.00007 * 146.64500 * 13 12 11 15 15 C 1.40279 * 119.99813 * 326.64938 * 13 12 11 16 16 N 1.30628 * 120.00133 * 351.15369 * 15 13 12 17 17 Si 1.86799 * 119.99888 * 171.16276 * 15 13 12 18 18 H 1.48493 * 109.47235 * 59.99746 * 17 15 13 19 19 H 1.48502 * 109.47034 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46643 * 299.99551 * 17 15 13 21 21 C 1.53003 * 117.50111 * 214.33709 * 2 1 3 22 22 C 1.52999 * 117.50444 * 145.67438 * 2 1 3 23 23 Cl 1.80300 * 117.49927 * 215.00191 * 22 2 1 24 24 Cl 1.80298 * 117.49787 * 0.02562 * 22 2 1 25 25 H 1.08993 * 109.47781 * 57.19827 * 1 2 3 26 26 H 1.09001 * 109.46805 * 177.19536 * 1 2 3 27 27 H 1.09007 * 109.46854 * 297.18973 * 1 2 3 28 28 H 1.09004 * 109.47452 * 300.98485 * 3 2 1 29 29 H 1.09003 * 109.47583 * 180.97891 * 3 2 1 30 30 H 0.97003 * 119.99930 * 355.65336 * 4 3 2 31 31 H 1.08001 * 119.95499 * 359.97438 * 8 7 5 32 32 H 1.08000 * 119.66195 * 180.02562 * 9 8 7 33 33 H 1.07999 * 119.70976 * 180.26986 * 10 9 8 34 34 H 1.08001 * 120.05539 * 180.02562 * 11 10 9 35 35 H 0.96994 * 120.00484 * 180.02562 * 16 15 13 36 36 H 1.09002 * 117.49585 * 359.96911 * 21 2 1 37 37 H 1.08997 * 117.49962 * 144.99232 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 7 1.7959 2.1100 1.2078 5 6 2.3275 3.3210 1.4672 6 8 3.1339 3.8082 0.6984 7 6 1.9315 4.0548 2.6830 8 6 1.0789 3.4654 3.6124 9 6 0.7105 4.1568 4.7512 10 6 1.1822 5.4417 4.9832 11 6 2.0262 6.0505 4.0831 12 6 2.4172 5.3680 2.9165 13 6 3.2815 5.9823 1.9887 14 1 3.9895 5.3855 1.4331 15 6 3.2222 7.3693 1.7867 16 7 2.2574 8.0669 2.3242 17 14 4.5228 8.2184 0.7490 18 1 4.5057 7.6547 -0.6247 19 1 4.2359 9.6742 0.6898 20 1 5.8602 8.0012 1.3566 21 6 2.2365 -1.1206 -0.7655 22 6 2.2366 -1.1207 0.7652 23 17 3.7830 -0.7136 1.5981 24 17 1.2025 -2.3409 1.5975 25 1 -0.3634 0.5567 -0.8637 26 1 -0.3633 -1.0265 -0.0503 27 1 -0.3633 0.4696 0.9142 28 1 1.8692 1.9364 -0.8810 29 1 3.2736 1.2652 -0.0176 30 1 1.1525 1.7214 1.8210 31 1 0.7047 2.4665 3.4434 32 1 0.0490 3.6926 5.4678 33 1 0.8879 5.9660 5.8803 34 1 2.3884 7.0503 4.2722 35 1 2.2162 9.0258 2.1842 36 1 1.6112 -1.8582 -1.2687 37 1 3.1713 -0.8745 -1.2690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868702758.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:21 Heat of formation + Delta-G solvation = -22.336865 kcal Electronic energy + Delta-G solvation = -22947.376629 eV Core-core repulsion = 19355.183773 eV Total energy + Delta-G solvation = -3592.192855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.86326 -39.68620 -38.42678 -37.02016 -36.87938 -35.68798 -34.76404 -31.84793 -31.39398 -29.61560 -27.99254 -26.91696 -23.86791 -23.34314 -22.66945 -21.11818 -20.47070 -19.33258 -18.12081 -17.37034 -17.10780 -16.68453 -16.30299 -15.91560 -15.60846 -15.30469 -14.97188 -14.67452 -14.47098 -14.10959 -13.95429 -13.68330 -13.46290 -13.31851 -13.07807 -12.83989 -12.79085 -12.57640 -12.51160 -12.41129 -12.29797 -12.16955 -11.92214 -11.73623 -11.47820 -11.26151 -11.12367 -10.67154 -10.17845 -9.91788 -9.36810 -9.21247 -8.65799 -6.35238 0.19850 0.54822 1.04049 1.18303 1.34416 1.45858 1.52437 1.99740 2.21819 2.39279 2.57133 2.82019 3.02488 3.38333 3.62008 3.75516 3.89834 4.33471 4.39693 4.59156 4.59653 4.59895 4.71043 4.79186 4.82359 4.91079 4.97009 5.12242 5.25334 5.26819 5.36465 5.64523 5.66010 5.84860 6.08393 6.13632 6.37099 6.67158 6.81469 6.95202 7.03532 7.70274 8.30819 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.016455 B = 0.003707 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.168413 B = 7551.358636 C = 8410.001734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.156 3.844 4 N -0.721 5.721 5 C 0.565 3.435 6 O -0.579 6.579 7 C -0.280 4.280 8 C -0.053 4.053 9 C -0.238 4.238 10 C -0.093 4.093 11 C -0.178 4.178 12 C 0.115 3.885 13 C -0.462 4.462 14 H 0.090 0.910 15 C 0.032 3.968 16 N -0.821 5.821 17 Si 0.978 3.022 18 H -0.271 1.271 19 H -0.260 1.260 20 H -0.260 1.260 21 C -0.106 4.106 22 C -0.007 4.007 23 Cl -0.110 7.110 24 Cl -0.092 7.092 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.403 0.597 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.289 0.711 36 H 0.152 0.848 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.327 -17.552 -4.800 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.104 4.104 3 C 0.032 3.968 4 N -0.375 5.375 5 C 0.358 3.642 6 O -0.460 6.460 7 C -0.285 4.285 8 C -0.071 4.071 9 C -0.257 4.257 10 C -0.112 4.112 11 C -0.197 4.197 12 C 0.111 3.889 13 C -0.491 4.491 14 H 0.107 0.893 15 C -0.183 4.183 16 N -0.448 5.448 17 Si 0.800 3.200 18 H -0.196 1.196 19 H -0.184 1.184 20 H -0.184 1.184 21 C -0.144 4.144 22 C -0.058 4.058 23 Cl -0.083 7.083 24 Cl -0.065 7.065 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.240 0.760 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.136 0.864 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.170 0.830 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.813 -17.049 -5.202 18.228 hybrid contribution 0.419 0.503 0.248 0.700 sum -3.394 -16.546 -4.954 17.602 Atomic orbital electron populations 1.21489 0.88282 1.04214 1.03723 1.22578 0.97747 0.89695 1.00399 1.20800 0.98811 0.88940 0.88246 1.45600 1.47449 1.18555 1.25915 1.18318 0.79910 0.80563 0.85413 1.90621 1.36199 1.68252 1.50971 1.19821 1.10526 0.99323 0.98841 1.21016 0.94531 0.98252 0.93346 1.20773 1.08306 0.96141 1.00475 1.21164 0.96347 0.95488 0.98183 1.21324 1.03298 1.00290 0.94804 1.17856 0.89025 0.90603 0.91399 1.20320 1.17060 0.92683 1.19046 0.89263 1.26827 0.97267 0.97807 0.96392 1.69741 1.28762 1.09214 1.37041 0.85315 0.78797 0.77223 0.78708 1.19605 1.18369 1.18426 1.24280 1.04130 0.98332 0.87609 1.27148 0.87371 0.98375 0.92955 1.98779 1.34247 1.93506 1.81725 1.98738 1.67934 1.58256 1.81580 0.89678 0.89689 0.91612 0.90909 0.92050 0.76035 0.85491 0.85195 0.86396 0.88132 0.90036 0.82981 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 9.01 71.98 0.65 -1.14 16 2 C -0.10 -1.87 2.21 -52.18 -0.12 -1.99 16 3 C 0.16 4.24 5.04 86.38 0.44 4.67 16 4 N -0.72 -24.06 5.40 -466.36 -2.52 -26.58 16 5 C 0.56 25.98 7.73 86.66 0.67 26.65 16 6 O -0.58 -31.03 13.49 -4.06 -0.05 -31.08 16 7 C -0.28 -13.73 5.92 -19.70 -0.12 -13.84 16 8 C -0.05 -2.14 9.52 22.50 0.21 -1.93 16 9 C -0.24 -9.45 10.03 22.41 0.22 -9.22 16 10 C -0.09 -4.11 10.01 22.26 0.22 -3.88 16 11 C -0.18 -9.28 8.62 22.72 0.20 -9.09 16 12 C 0.11 6.38 5.52 -21.11 -0.12 6.27 16 13 C -0.46 -26.76 7.86 23.42 0.18 -26.58 16 14 H 0.09 5.43 5.62 -2.91 -0.02 5.42 16 15 C 0.03 1.72 5.26 85.37 0.45 2.16 16 16 N -0.82 -43.97 11.06 21.88 0.24 -43.73 16 17 Si 0.98 41.77 29.57 68.60 2.03 43.80 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 19 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 20 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 21 C -0.11 -1.40 9.62 30.62 0.29 -1.10 16 22 C -0.01 -0.13 3.61 30.62 0.11 -0.02 16 23 Cl -0.11 -2.77 27.70 -2.72 -0.08 -2.85 16 24 Cl -0.09 -1.67 27.74 -2.72 -0.08 -1.74 16 25 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.00 7.15 -2.39 -0.02 0.98 16 27 H 0.06 1.08 7.38 -2.38 -0.02 1.06 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 1.86 7.07 -2.39 -0.02 1.84 16 30 H 0.40 11.58 5.70 -92.71 -0.53 11.06 16 31 H 0.13 4.06 6.42 -2.91 -0.02 4.04 16 32 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 33 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.10 5.49 6.52 -2.91 -0.02 5.47 16 35 H 0.29 13.99 8.29 -92.71 -0.77 13.22 16 36 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -67.73 339.08 3.44 -64.28 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.59 Total: 26.93 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 3.30 Total: -29.04 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -2.28 Total: -70.31 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.05 Total: -31.08 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 17 Polarization: -4.44 SS G_CDS: -0.15 Total: -4.59 kcal Total: -67.73 3.44 -64.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868702758.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.947 kcal (2) G-P(sol) polarization free energy of solvation -67.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds