Wall clock time and date at job start Tue Mar 31 2020 15:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 115.54817 * 2 1 4 4 N 1.46500 * 109.47132 * 294.78369 * 3 2 1 5 5 C 1.34777 * 119.99939 * 173.99876 * 4 3 2 6 6 O 1.21612 * 119.99696 * 359.97438 * 5 4 3 7 7 C 1.47429 * 120.00220 * 180.02562 * 5 4 3 8 8 C 1.39224 * 120.27984 * 4.07597 * 7 5 4 9 9 C 1.38224 * 120.08882 * 180.28391 * 8 7 5 10 10 C 1.38823 * 120.67696 * 359.71844 * 9 8 7 11 11 C 1.37593 * 120.57066 * 359.97438 * 10 9 8 12 12 C 1.40701 * 119.88309 * 0.02562 * 11 10 9 13 13 C 1.40895 * 120.33114 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99966 * 217.05441 * 13 12 11 15 15 C 1.40271 * 120.00010 * 37.04661 * 13 12 11 16 16 N 1.30627 * 120.00046 * 194.80577 * 15 13 12 17 17 Si 1.86799 * 120.00010 * 14.80476 * 15 13 12 18 18 H 1.48503 * 109.47402 * 273.98621 * 17 15 13 19 19 H 1.48505 * 109.46969 * 33.98121 * 17 15 13 20 20 H 1.48494 * 109.47497 * 153.98372 * 17 15 13 21 21 C 1.52997 * 117.49630 * 145.67250 * 2 1 3 22 22 C 1.52999 * 117.49897 * 214.32689 * 2 1 3 23 23 Cl 1.80305 * 117.49962 * 359.97438 * 22 2 1 24 24 Cl 1.80301 * 117.49622 * 144.99916 * 22 2 1 25 25 H 1.09007 * 109.46838 * 61.15089 * 1 2 3 26 26 H 1.09004 * 109.46813 * 181.14050 * 1 2 3 27 27 H 1.08997 * 109.47384 * 301.14272 * 1 2 3 28 28 H 1.09005 * 109.46963 * 174.78079 * 3 2 1 29 29 H 1.09003 * 109.46970 * 54.78697 * 3 2 1 30 30 H 0.96993 * 120.00287 * 353.99461 * 4 3 2 31 31 H 1.08000 * 119.95712 * 0.02562 * 8 7 5 32 32 H 1.08010 * 119.66014 * 179.70262 * 9 8 7 33 33 H 1.07998 * 119.71691 * 180.02562 * 10 9 8 34 34 H 1.08003 * 120.06239 * 180.02562 * 11 10 9 35 35 H 0.97000 * 119.99698 * 180.02562 * 16 15 13 36 36 H 1.09003 * 117.49881 * 215.00833 * 21 2 1 37 37 H 1.08998 * 117.49938 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 1.8781 2.0707 -1.2540 5 6 2.2531 3.3534 -1.4284 6 8 2.8498 3.9380 -0.5445 7 6 1.9388 4.0483 -2.6901 8 6 1.1820 3.4138 -3.6713 9 6 0.8947 4.0668 -4.8552 10 6 1.3489 5.3594 -5.0794 11 6 2.0936 6.0147 -4.1260 12 6 2.4000 5.3723 -2.9122 13 6 3.1615 6.0347 -1.9291 14 1 3.8785 5.4832 -1.3389 15 6 2.9886 7.4105 -1.7169 16 7 3.8732 8.0815 -1.0287 17 14 1.4933 8.2830 -2.4185 18 1 1.7739 8.7002 -3.8158 19 1 0.3291 7.3612 -2.4015 20 1 1.1881 9.4811 -1.5960 21 6 2.2364 -1.1208 0.7653 22 6 2.2365 -1.1208 -0.7653 23 17 1.2023 -2.3409 -1.5976 24 17 3.7829 -0.7137 -1.5982 25 1 -0.3633 0.4959 -0.9002 26 1 -0.3633 -1.0275 0.0205 27 1 -0.3634 0.5315 0.8795 28 1 3.2700 1.2668 0.0935 29 1 1.8119 1.9637 0.8396 30 1 1.4019 1.6046 -1.9588 31 1 0.8224 2.4084 -3.5091 32 1 0.3110 3.5662 -5.6137 33 1 1.1150 5.8552 -6.0099 34 1 2.4425 7.0203 -4.3088 35 1 3.7533 9.0327 -0.8817 36 1 3.1713 -0.8747 1.2690 37 1 1.6112 -1.8583 1.2684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868702769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:25 Heat of formation + Delta-G solvation = -3.866579 kcal Electronic energy + Delta-G solvation = -23010.804431 eV Core-core repulsion = 19419.412508 eV Total energy + Delta-G solvation = -3591.391923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.53560 -38.52297 -36.90845 -36.18431 -35.94233 -33.88073 -33.22324 -30.44081 -30.20724 -28.85188 -26.64309 -25.10564 -22.66986 -22.26579 -21.01916 -19.73328 -19.30906 -17.60435 -16.94735 -16.32905 -15.58665 -15.38707 -14.97047 -14.30685 -14.07640 -13.98224 -13.81654 -13.44726 -13.31158 -12.81779 -12.66529 -12.48439 -12.35256 -12.23093 -11.91870 -11.72379 -11.66758 -11.42373 -11.31063 -10.90953 -10.86396 -10.75382 -10.47433 -10.44377 -10.13273 -9.84654 -9.82916 -9.18708 -8.53780 -8.42297 -7.82530 -7.57154 -6.91181 -4.45393 1.00313 2.00693 2.11700 2.60763 2.82098 3.10513 3.17075 3.29229 3.73604 3.82892 3.95964 4.03457 4.26391 4.55443 4.59363 4.69588 5.18361 5.32045 5.40255 5.50392 5.53554 5.77057 5.79713 5.82600 5.94841 6.00764 6.11155 6.40984 6.55470 6.80958 7.03861 7.11071 7.24827 7.41135 7.61032 7.77464 8.02996 8.30342 8.48493 8.65245 8.85551 9.34029 10.06861 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.018822 B = 0.003664 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.244712 B = 7640.518548 C = 8189.222226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 C 0.158 3.842 4 N -0.742 5.742 5 C 0.564 3.436 6 O -0.527 6.527 7 C -0.248 4.248 8 C -0.040 4.040 9 C -0.255 4.255 10 C -0.065 4.065 11 C -0.229 4.229 12 C 0.117 3.883 13 C -0.400 4.400 14 H 0.118 0.882 15 C 0.081 3.919 16 N -0.793 5.793 17 Si 0.908 3.092 18 H -0.264 1.264 19 H -0.249 1.249 20 H -0.288 1.288 21 C -0.132 4.132 22 C 0.001 3.999 23 Cl -0.098 7.098 24 Cl -0.080 7.080 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.392 0.608 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.286 0.714 36 H 0.123 0.877 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.133 -16.369 1.892 17.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.103 4.103 3 C 0.033 3.967 4 N -0.397 5.397 5 C 0.357 3.643 6 O -0.404 6.404 7 C -0.253 4.253 8 C -0.059 4.059 9 C -0.274 4.274 10 C -0.083 4.083 11 C -0.248 4.248 12 C 0.113 3.887 13 C -0.426 4.426 14 H 0.136 0.864 15 C -0.139 4.139 16 N -0.416 5.416 17 Si 0.734 3.266 18 H -0.190 1.190 19 H -0.172 1.172 20 H -0.215 1.215 21 C -0.170 4.170 22 C -0.050 4.050 23 Cl -0.071 7.071 24 Cl -0.053 7.053 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.227 0.773 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.141 0.859 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.496 -15.768 2.576 16.896 hybrid contribution -0.741 0.028 -0.867 1.141 sum -6.237 -15.741 1.709 17.017 Atomic orbital electron populations 1.21459 0.89643 1.03008 1.03749 1.22725 0.97012 0.91568 0.98993 1.20707 0.99163 0.87675 0.89107 1.45862 1.62787 1.13576 1.17502 1.18322 0.78336 0.79855 0.87796 1.90755 1.40602 1.65020 1.44023 1.19416 1.11621 0.98968 0.95305 1.20771 0.95161 0.96672 0.93310 1.20292 1.11235 0.96910 0.98960 1.20758 0.95677 0.94590 0.97311 1.21288 1.07354 1.00994 0.95162 1.17535 0.88572 0.90663 0.91950 1.20005 1.16088 0.92186 1.14366 0.86428 1.26324 0.97113 0.97273 0.93209 1.69592 1.32203 1.09844 1.29987 0.86407 0.82843 0.78571 0.78771 1.18993 1.17223 1.21495 1.24065 1.03888 0.99755 0.89268 1.26978 0.88326 0.97880 0.91828 1.98736 1.68279 1.58652 1.81385 1.98782 1.32294 1.93250 1.80991 0.90841 0.91401 0.90500 0.91262 0.90105 0.77327 0.88819 0.88583 0.88613 0.87435 0.90291 0.85877 0.85948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.14 37.16 0.34 -0.73 16 2 C -0.10 -1.02 2.13 -154.51 -0.33 -1.35 16 3 C 0.16 2.18 4.94 -4.04 -0.02 2.16 16 4 N -0.74 -12.28 5.42 -61.38 -0.33 -12.61 16 5 C 0.56 12.48 7.73 -12.52 -0.10 12.39 16 6 O -0.53 -13.67 13.60 5.27 0.07 -13.60 16 7 C -0.25 -5.77 5.92 -104.37 -0.62 -6.39 16 8 C -0.04 -0.80 9.52 -39.22 -0.37 -1.18 16 9 C -0.25 -5.01 10.03 -39.37 -0.39 -5.41 16 10 C -0.06 -1.35 10.01 -39.60 -0.40 -1.74 16 11 C -0.23 -5.41 7.29 -38.89 -0.28 -5.69 16 12 C 0.12 3.01 4.96 -106.54 -0.53 2.48 16 13 C -0.40 -11.17 8.13 -37.81 -0.31 -11.48 16 14 H 0.12 3.63 6.21 -52.48 -0.33 3.31 16 15 C 0.08 2.17 5.42 -17.30 -0.09 2.07 16 16 N -0.79 -21.47 13.92 55.56 0.77 -20.70 16 17 Si 0.91 20.81 24.86 -169.99 -4.23 16.58 16 18 H -0.26 -5.75 6.42 56.52 0.36 -5.39 16 19 H -0.25 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 21 C -0.13 -1.05 9.61 -26.70 -0.26 -1.31 16 22 C 0.00 0.01 3.61 -26.70 -0.10 -0.08 16 23 Cl -0.10 -0.98 27.70 -51.86 -1.44 -2.41 16 24 Cl -0.08 -1.01 27.80 -51.86 -1.44 -2.46 16 25 H 0.07 0.70 7.91 -51.92 -0.41 0.29 16 26 H 0.07 0.52 7.08 -51.93 -0.37 0.15 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.02 7.25 -51.93 -0.38 0.64 16 29 H 0.08 1.17 8.12 -51.93 -0.42 0.74 16 30 H 0.39 5.78 6.29 -40.82 -0.26 5.53 16 31 H 0.09 1.54 6.42 -52.49 -0.34 1.20 16 32 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 33 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.11 2.52 5.22 -52.48 -0.27 2.24 16 35 H 0.29 6.97 8.29 -40.82 -0.34 6.63 16 36 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 335.71 15.07 5.06 5.06 Total: -1.00 -29.90 335.71 -9.04 -38.95 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -4.06 Total: 7.44 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -3.45 Total: -16.25 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.44 Total: -33.31 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: 0.07 Total: -13.60 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.23 Total: 16.58 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -2.88 Total: -4.87 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.90 -9.04 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868702769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.079 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds