Wall clock time and date at job start Tue Mar 31 2020 15:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 115.54817 * 2 1 4 4 N 1.46500 * 109.47132 * 294.78369 * 3 2 1 5 5 C 1.34777 * 119.99939 * 173.99876 * 4 3 2 6 6 O 1.21612 * 119.99696 * 359.97438 * 5 4 3 7 7 C 1.47429 * 120.00220 * 180.02562 * 5 4 3 8 8 C 1.39224 * 120.27984 * 4.07597 * 7 5 4 9 9 C 1.38224 * 120.08882 * 180.28391 * 8 7 5 10 10 C 1.38823 * 120.67696 * 359.71844 * 9 8 7 11 11 C 1.37593 * 120.57066 * 359.97438 * 10 9 8 12 12 C 1.40701 * 119.88309 * 0.02562 * 11 10 9 13 13 C 1.40895 * 120.33114 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99966 * 217.05441 * 13 12 11 15 15 C 1.40271 * 120.00010 * 37.04661 * 13 12 11 16 16 N 1.30627 * 120.00046 * 194.80577 * 15 13 12 17 17 Si 1.86799 * 120.00010 * 14.80476 * 15 13 12 18 18 H 1.48503 * 109.47402 * 273.98621 * 17 15 13 19 19 H 1.48505 * 109.46969 * 33.98121 * 17 15 13 20 20 H 1.48494 * 109.47497 * 153.98372 * 17 15 13 21 21 C 1.52997 * 117.49630 * 145.67250 * 2 1 3 22 22 C 1.52999 * 117.49897 * 214.32689 * 2 1 3 23 23 Cl 1.80305 * 117.49962 * 359.97438 * 22 2 1 24 24 Cl 1.80301 * 117.49622 * 144.99916 * 22 2 1 25 25 H 1.09007 * 109.46838 * 61.15089 * 1 2 3 26 26 H 1.09004 * 109.46813 * 181.14050 * 1 2 3 27 27 H 1.08997 * 109.47384 * 301.14272 * 1 2 3 28 28 H 1.09005 * 109.46963 * 174.78079 * 3 2 1 29 29 H 1.09003 * 109.46970 * 54.78697 * 3 2 1 30 30 H 0.96993 * 120.00287 * 353.99461 * 4 3 2 31 31 H 1.08000 * 119.95712 * 0.02562 * 8 7 5 32 32 H 1.08010 * 119.66014 * 179.70262 * 9 8 7 33 33 H 1.07998 * 119.71691 * 180.02562 * 10 9 8 34 34 H 1.08003 * 120.06239 * 180.02562 * 11 10 9 35 35 H 0.97000 * 119.99698 * 180.02562 * 16 15 13 36 36 H 1.09003 * 117.49881 * 215.00833 * 21 2 1 37 37 H 1.08998 * 117.49938 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 1.8781 2.0707 -1.2540 5 6 2.2531 3.3534 -1.4284 6 8 2.8498 3.9380 -0.5445 7 6 1.9388 4.0483 -2.6901 8 6 1.1820 3.4138 -3.6713 9 6 0.8947 4.0668 -4.8552 10 6 1.3489 5.3594 -5.0794 11 6 2.0936 6.0147 -4.1260 12 6 2.4000 5.3723 -2.9122 13 6 3.1615 6.0347 -1.9291 14 1 3.8785 5.4832 -1.3389 15 6 2.9886 7.4105 -1.7169 16 7 3.8732 8.0815 -1.0287 17 14 1.4933 8.2830 -2.4185 18 1 1.7739 8.7002 -3.8158 19 1 0.3291 7.3612 -2.4015 20 1 1.1881 9.4811 -1.5960 21 6 2.2364 -1.1208 0.7653 22 6 2.2365 -1.1208 -0.7653 23 17 1.2023 -2.3409 -1.5976 24 17 3.7829 -0.7137 -1.5982 25 1 -0.3633 0.4959 -0.9002 26 1 -0.3633 -1.0275 0.0205 27 1 -0.3634 0.5315 0.8795 28 1 3.2700 1.2668 0.0935 29 1 1.8119 1.9637 0.8396 30 1 1.4019 1.6046 -1.9588 31 1 0.8224 2.4084 -3.5091 32 1 0.3110 3.5662 -5.6137 33 1 1.1150 5.8552 -6.0099 34 1 2.4425 7.0203 -4.3088 35 1 3.7533 9.0327 -0.8817 36 1 3.1713 -0.8747 1.2690 37 1 1.6112 -1.8583 1.2684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868702769.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:24 Heat of formation + Delta-G solvation = -22.124933 kcal Electronic energy + Delta-G solvation = -23011.596173 eV Core-core repulsion = 19419.412508 eV Total energy + Delta-G solvation = -3592.183665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.053 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95135 -39.75943 -38.57066 -37.03065 -36.89204 -35.65117 -34.82440 -32.26688 -31.85955 -29.64165 -28.00791 -26.84648 -24.00538 -23.38311 -22.76762 -21.19072 -20.48252 -19.41621 -18.39108 -17.40865 -17.17129 -16.77097 -16.39609 -15.80979 -15.64605 -15.48252 -15.33957 -14.65250 -14.50157 -14.19106 -14.11635 -13.83012 -13.57971 -13.41194 -13.18009 -13.06586 -12.66016 -12.63446 -12.53344 -12.51123 -12.19292 -12.16660 -12.02357 -11.76184 -11.63230 -11.27741 -11.02155 -10.68220 -10.34487 -9.97362 -9.52430 -9.38492 -8.82715 -6.44577 0.17962 0.36033 0.83832 1.17224 1.25084 1.37615 1.46463 1.95944 2.11250 2.29314 2.53114 2.72279 3.01134 3.36753 3.55424 3.59461 3.88579 4.22968 4.28249 4.46149 4.58358 4.59283 4.66431 4.76139 4.78544 4.82900 4.88783 4.91148 5.03290 5.25006 5.31246 5.48308 5.59818 5.70359 5.88788 5.98070 6.28001 6.47860 6.67644 6.80816 6.90627 7.64715 8.22887 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.018822 B = 0.003664 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.244712 B = 7640.518548 C = 8189.222226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.156 3.844 4 N -0.719 5.719 5 C 0.558 3.442 6 O -0.575 6.575 7 C -0.265 4.265 8 C -0.039 4.039 9 C -0.231 4.231 10 C -0.061 4.061 11 C -0.249 4.249 12 C 0.101 3.899 13 C -0.447 4.447 14 H 0.067 0.933 15 C 0.040 3.960 16 N -0.847 5.847 17 Si 0.965 3.035 18 H -0.243 1.243 19 H -0.260 1.260 20 H -0.276 1.276 21 C -0.108 4.108 22 C -0.006 4.006 23 Cl -0.090 7.090 24 Cl -0.108 7.108 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.404 0.596 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.293 0.707 36 H 0.129 0.871 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.374 -18.903 -0.155 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.104 4.104 3 C 0.032 3.968 4 N -0.373 5.373 5 C 0.351 3.649 6 O -0.456 6.456 7 C -0.270 4.270 8 C -0.058 4.058 9 C -0.250 4.250 10 C -0.079 4.079 11 C -0.269 4.269 12 C 0.097 3.903 13 C -0.476 4.476 14 H 0.084 0.916 15 C -0.174 4.174 16 N -0.474 5.474 17 Si 0.787 3.213 18 H -0.168 1.168 19 H -0.184 1.184 20 H -0.202 1.202 21 C -0.145 4.145 22 C -0.057 4.057 23 Cl -0.063 7.063 24 Cl -0.081 7.081 25 H 0.085 0.915 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.241 0.759 31 H 0.152 0.848 32 H 0.160 0.840 33 H 0.153 0.847 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.147 0.853 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.754 -18.357 0.504 20.343 hybrid contribution 0.144 0.465 -0.364 0.607 sum -8.610 -17.892 0.141 19.856 Atomic orbital electron populations 1.21487 0.88210 1.04147 1.03773 1.22574 0.97773 0.89511 1.00505 1.20777 0.98971 0.89644 0.87358 1.45584 1.61118 1.11802 1.18764 1.18421 0.77981 0.81304 0.87211 1.90753 1.42726 1.66662 1.45415 1.19838 1.11792 0.98613 0.96725 1.21189 0.93733 0.98379 0.92504 1.20931 1.08817 0.96145 0.99115 1.21248 0.93840 0.95063 0.97788 1.21375 1.08850 1.01407 0.95223 1.17794 0.88410 0.91951 0.92123 1.19752 1.18328 0.93088 1.16402 0.91551 1.27018 0.99437 0.97436 0.93482 1.69642 1.34251 1.10473 1.33015 0.85552 0.78839 0.77516 0.79358 1.16760 1.18387 1.20236 1.24274 1.04112 0.98396 0.87767 1.27121 0.87359 0.98274 0.92977 1.98739 1.67861 1.58193 1.81486 1.98783 1.34194 1.93493 1.81654 0.91479 0.89685 0.89877 0.92447 0.90910 0.75909 0.84754 0.83979 0.84683 0.87832 0.89666 0.85266 0.82983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.14 71.98 0.66 -1.08 16 2 C -0.10 -1.83 2.13 -52.18 -0.11 -1.94 16 3 C 0.16 4.27 4.94 86.38 0.43 4.70 16 4 N -0.72 -23.38 5.42 -466.35 -2.53 -25.91 16 5 C 0.56 25.41 7.73 86.66 0.67 26.08 16 6 O -0.57 -31.99 13.60 -4.07 -0.06 -32.05 16 7 C -0.26 -12.27 5.92 -19.70 -0.12 -12.39 16 8 C -0.04 -1.43 9.52 22.50 0.21 -1.21 16 9 C -0.23 -7.82 10.03 22.41 0.22 -7.59 16 10 C -0.06 -2.29 10.01 22.26 0.22 -2.06 16 11 C -0.25 -11.53 7.29 22.72 0.17 -11.36 16 12 C 0.10 5.32 4.96 -21.11 -0.10 5.21 16 13 C -0.45 -26.88 8.13 23.42 0.19 -26.69 16 14 H 0.07 4.56 6.21 -2.91 -0.02 4.54 16 15 C 0.04 2.29 5.42 85.37 0.46 2.75 16 16 N -0.85 -49.37 13.92 21.88 0.30 -49.06 16 17 Si 0.97 43.98 24.86 68.60 1.71 45.68 16 18 H -0.24 -10.09 6.42 99.48 0.64 -9.45 16 19 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 21 C -0.11 -1.41 9.61 30.61 0.29 -1.12 16 22 C -0.01 -0.11 3.61 30.62 0.11 0.00 16 23 Cl -0.09 -1.53 27.70 -2.72 -0.08 -1.61 16 24 Cl -0.11 -2.63 27.80 -2.72 -0.08 -2.71 16 25 H 0.07 1.07 7.91 -2.38 -0.02 1.05 16 26 H 0.08 0.97 7.08 -2.38 -0.02 0.95 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.73 7.25 -2.38 -0.02 1.71 16 29 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 30 H 0.40 11.02 6.29 -92.71 -0.58 10.43 16 31 H 0.13 3.72 6.42 -2.91 -0.02 3.70 16 32 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 33 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 34 H 0.10 4.80 5.22 -2.91 -0.02 4.78 16 35 H 0.29 15.24 8.29 -92.71 -0.77 14.47 16 36 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.15 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -72.10 335.71 3.06 -69.04 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.47 Total: 23.31 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 3.31 Total: -26.70 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -2.22 Total: -74.97 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.06 Total: -32.05 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.71 Total: 45.68 kcal Atomic # 17 Polarization: -4.16 SS G_CDS: -0.15 Total: -4.31 kcal Total: -72.10 3.06 -69.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868702769.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.914 kcal (2) G-P(sol) polarization free energy of solvation -72.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds