Wall clock time and date at job start Tue Mar 31 2020 15:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38089 * 120.02698 * 2 1 4 4 C 1.38499 * 120.05164 * 180.02562 * 3 2 1 5 5 F 1.35098 * 119.94527 * 180.02562 * 4 3 2 6 6 C 1.38542 * 120.10317 * 359.97438 * 4 3 2 7 7 C 1.38035 * 120.05563 * 0.30304 * 6 4 3 8 8 C 1.38931 * 120.02773 * 180.02562 * 2 1 3 9 9 N 1.39839 * 120.05095 * 0.02562 * 8 2 1 10 10 C 1.37129 * 119.99987 * 269.99844 * 9 8 2 11 11 H 1.08001 * 119.99952 * 170.56127 * 10 9 8 12 12 C 1.38881 * 119.99886 * 350.55562 * 10 9 8 13 13 N 1.31428 * 120.00107 * 9.01951 * 12 10 9 14 14 Si 1.86795 * 120.00016 * 189.01474 * 12 10 9 15 15 H 1.48498 * 109.47602 * 60.00138 * 14 12 10 16 16 H 1.48502 * 109.47018 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47199 * 300.00309 * 14 12 10 18 18 C 1.34774 * 120.00366 * 89.99560 * 9 8 2 19 19 O 1.21286 * 119.99616 * 3.61904 * 18 9 8 20 20 C 1.50701 * 120.00435 * 183.61420 * 18 9 8 21 21 S 1.82840 * 110.31447 * 302.67078 * 20 18 9 22 22 C 1.82917 * 99.53786 * 217.11858 * 21 20 18 23 23 C 1.54501 * 104.97573 * 44.28952 * 22 21 20 24 24 S 1.82123 * 106.98182 * 313.62210 * 23 22 21 25 25 H 1.09001 * 109.46965 * 90.00300 * 1 2 3 26 26 H 1.08999 * 109.47052 * 209.99851 * 1 2 3 27 27 H 1.08995 * 109.47141 * 330.00307 * 1 2 3 28 28 H 1.08000 * 119.97210 * 0.04755 * 3 2 1 29 29 H 1.08002 * 119.96460 * 180.02562 * 6 4 3 30 30 H 1.07999 * 120.03020 * 179.72567 * 7 6 4 31 31 H 0.96994 * 120.00414 * 174.98383 * 13 12 10 32 32 H 1.09001 * 110.27295 * 64.87249 * 20 18 9 33 33 H 1.09000 * 110.34029 * 285.41878 * 22 21 20 34 34 H 1.09003 * 110.43119 * 163.20873 * 22 21 20 35 35 H 1.09000 * 109.95751 * 194.24522 * 23 22 21 36 36 H 1.08994 * 109.98627 * 73.02031 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1956 0.0000 4 6 3.5830 1.1962 -0.0005 5 9 4.2568 2.3671 0.0000 6 6 4.2784 -0.0021 -0.0005 7 6 3.5920 -1.1997 -0.0063 8 6 2.2022 -1.2028 -0.0005 9 7 1.5047 -2.4148 -0.0016 10 6 1.1622 -3.0099 1.1854 11 1 0.4961 -3.8599 1.1909 12 6 1.6722 -2.5195 2.3805 13 7 2.3361 -1.3853 2.3955 14 14 1.4145 -3.4719 3.9666 15 1 2.0277 -4.8185 3.8408 16 1 2.0509 -2.7410 5.0919 17 1 -0.0404 -3.6131 4.2285 18 6 1.1689 -2.9981 -1.1693 19 8 1.5283 -2.5064 -2.2181 20 6 0.3470 -4.2613 -1.1718 21 16 1.1848 -5.5656 -0.2023 22 6 0.7604 -7.0224 -1.2239 23 6 0.9970 -6.5700 -2.6822 24 16 0.2218 -4.9320 -2.8634 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6580 2.1309 0.0008 29 1 5.3584 0.0010 -0.0005 30 1 4.1345 -2.1336 -0.0108 31 1 2.6292 -1.0060 3.2388 32 1 -0.6463 -4.0663 -0.7675 33 1 -0.2842 -7.2967 -1.0772 34 1 1.4102 -7.8622 -0.9776 35 1 0.5360 -7.2780 -3.3708 36 1 2.0663 -6.4997 -2.8816 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875980688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:42 Heat of formation + Delta-G solvation = -26.331392 kcal Electronic energy + Delta-G solvation = -23933.880807 eV Core-core repulsion = 20357.974938 eV Total energy + Delta-G solvation = -3575.905869 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.08091 -39.67381 -37.34239 -34.86323 -33.00748 -31.95704 -31.65929 -30.03385 -28.06091 -26.21406 -24.94976 -23.61609 -22.05370 -20.93726 -19.60322 -18.26968 -17.06266 -16.42838 -16.33851 -15.87047 -15.70651 -15.02997 -14.90723 -14.76000 -14.49023 -13.96558 -13.65304 -13.46130 -13.11020 -12.73262 -12.64589 -12.50832 -12.38746 -12.16430 -11.84916 -11.70283 -11.61326 -11.28454 -11.15091 -10.89748 -10.72277 -10.55383 -10.37803 -10.18276 -9.56510 -9.30845 -8.92491 -8.25285 -7.88967 -7.68040 -7.48362 -7.43598 -6.24416 -4.16915 1.39036 1.76723 2.06792 2.22008 2.27727 2.92344 3.06305 3.12985 3.14031 3.66412 3.88073 4.27746 4.56984 4.60464 4.89614 4.92889 5.14599 5.31027 5.39057 5.48409 5.60501 5.65538 5.69318 5.69982 5.97557 6.21328 6.35739 6.39138 6.57490 6.71956 6.97219 7.05139 7.15068 7.23119 7.40035 7.59841 7.81589 8.21779 8.80644 9.10658 9.52372 10.44923 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013159 B = 0.005870 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.277093 B = 4769.101617 C = 6076.195056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.050 4.050 3 C -0.148 4.148 4 C 0.067 3.933 5 F -0.159 7.159 6 C -0.151 4.151 7 C -0.057 4.057 8 C 0.253 3.747 9 N -0.400 5.400 10 C -0.345 4.345 11 H 0.116 0.884 12 C 0.049 3.951 13 N -0.846 5.846 14 Si 0.922 3.078 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.271 1.271 18 C 0.481 3.519 19 O -0.557 6.557 20 C -0.025 4.025 21 S -0.163 6.163 22 C -0.127 4.127 23 C -0.092 4.092 24 S -0.208 6.208 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.054 0.946 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.276 0.724 32 H 0.133 0.867 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.743 -5.986 -2.458 7.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.052 4.052 3 C -0.168 4.168 4 C 0.048 3.952 5 F -0.138 7.138 6 C -0.171 4.171 7 C -0.077 4.077 8 C 0.161 3.839 9 N -0.117 5.117 10 C -0.473 4.473 11 H 0.133 0.867 12 C -0.159 4.159 13 N -0.481 5.481 14 Si 0.748 3.252 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.196 1.196 18 C 0.266 3.734 19 O -0.439 6.439 20 C -0.267 4.267 21 S 0.065 5.935 22 C -0.277 4.277 23 C -0.243 4.243 24 S 0.018 5.982 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.088 0.912 32 H 0.151 0.849 33 H 0.113 0.887 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.225 -5.092 -2.770 6.209 hybrid contribution -0.181 -0.853 1.278 1.547 sum -2.407 -5.945 -1.492 6.585 Atomic orbital electron populations 1.20615 0.91752 1.02749 1.00939 1.19456 0.95586 0.91472 0.98671 1.20468 0.91910 0.97927 1.06476 1.17417 0.90013 0.80508 1.07279 1.91379 1.80763 1.46914 1.94729 1.20564 0.99165 0.91190 1.06179 1.20645 0.93376 0.96549 0.97108 1.16730 0.89761 0.84337 0.93030 1.41134 1.48076 1.17338 1.05197 1.19786 1.30481 1.14573 0.82477 0.86710 1.25230 0.94994 0.96012 0.99697 1.69854 1.34486 1.16197 1.27574 0.86033 0.78926 0.79864 0.80402 1.19237 1.20740 1.19626 1.18800 0.85082 0.85426 0.84078 1.90667 1.57573 1.64963 1.30736 1.25710 1.05786 0.99549 0.95655 1.88538 1.70809 0.98441 1.35716 1.24747 1.05988 1.01821 0.95159 1.24358 1.05223 0.96060 0.98663 1.87048 1.78695 1.16696 1.15721 0.92475 0.90433 0.92676 0.86441 0.86472 0.86814 0.91176 0.84898 0.88690 0.86456 0.87047 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 9.77 36.00 0.35 -1.69 16 2 C -0.05 -1.10 5.37 -104.42 -0.56 -1.66 16 3 C -0.15 -3.06 9.67 -39.54 -0.38 -3.45 16 4 C 0.07 1.39 7.30 -39.37 -0.29 1.11 16 5 F -0.16 -3.13 17.26 2.25 0.04 -3.10 16 6 C -0.15 -3.15 10.02 -39.54 -0.40 -3.55 16 7 C -0.06 -1.30 8.75 -39.38 -0.34 -1.64 16 8 C 0.25 5.92 2.21 -83.67 -0.18 5.74 16 9 N -0.40 -9.29 1.78 -58.97 -0.11 -9.39 16 10 C -0.35 -7.88 7.60 -14.94 -0.11 -7.99 16 11 H 0.12 2.50 5.09 -46.88 -0.24 2.27 16 12 C 0.05 1.12 5.44 -17.49 -0.10 1.03 16 13 N -0.85 -20.28 9.44 55.49 0.52 -19.76 16 14 Si 0.92 18.52 29.56 -169.99 -5.03 13.49 16 15 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 16 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 17 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 18 C 0.48 10.95 7.13 -10.99 -0.08 10.87 16 19 O -0.56 -14.13 15.94 5.55 0.09 -14.04 16 20 C -0.03 -0.48 3.05 36.01 0.11 -0.37 16 21 S -0.16 -2.82 19.19 -104.25 -2.00 -4.82 16 22 C -0.13 -1.55 7.04 37.95 0.27 -1.28 16 23 C -0.09 -1.17 6.84 37.95 0.26 -0.91 16 24 S -0.21 -3.56 21.50 -104.25 -2.24 -5.80 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.08 1.63 6.92 -51.93 -0.36 1.27 16 27 H 0.05 0.95 8.09 -51.93 -0.42 0.54 16 28 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.12 2.14 8.06 -52.49 -0.42 1.71 16 30 H 0.11 2.59 8.06 -52.49 -0.42 2.16 16 31 H 0.28 6.51 8.32 -40.82 -0.34 6.17 16 32 H 0.13 2.38 8.10 -51.93 -0.42 1.96 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 327.60 15.07 4.94 4.94 Total: -1.00 -27.08 327.60 -9.20 -36.28 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.96 Total: 6.01 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -1.45 Total: -3.81 kcal Atomic # 7 Polarization: -29.57 SS G_CDS: 0.42 Total: -29.15 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.09 Total: -14.04 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.10 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Atomic # 16 Polarization: -6.38 SS G_CDS: -4.24 Total: -10.62 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.08 -9.20 -36.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875980688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.946 kcal (2) G-P(sol) polarization free energy of solvation -27.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds