Wall clock time and date at job start Tue Mar 31 2020 15:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38089 * 120.02698 * 2 1 4 4 C 1.38499 * 120.05164 * 180.02562 * 3 2 1 5 5 F 1.35098 * 119.94527 * 180.02562 * 4 3 2 6 6 C 1.38542 * 120.10317 * 359.97438 * 4 3 2 7 7 C 1.38035 * 120.05563 * 0.30304 * 6 4 3 8 8 C 1.38931 * 120.02773 * 180.02562 * 2 1 3 9 9 N 1.39839 * 120.05095 * 0.02562 * 8 2 1 10 10 C 1.37129 * 119.99987 * 269.99844 * 9 8 2 11 11 H 1.08001 * 119.99952 * 170.56127 * 10 9 8 12 12 C 1.38881 * 119.99886 * 350.55562 * 10 9 8 13 13 N 1.31428 * 120.00107 * 9.01951 * 12 10 9 14 14 Si 1.86795 * 120.00016 * 189.01474 * 12 10 9 15 15 H 1.48498 * 109.47602 * 60.00138 * 14 12 10 16 16 H 1.48502 * 109.47018 * 180.02562 * 14 12 10 17 17 H 1.48507 * 109.47199 * 300.00309 * 14 12 10 18 18 C 1.34774 * 120.00366 * 89.99560 * 9 8 2 19 19 O 1.21286 * 119.99616 * 3.61904 * 18 9 8 20 20 C 1.50701 * 120.00435 * 183.61420 * 18 9 8 21 21 S 1.82840 * 110.31447 * 302.67078 * 20 18 9 22 22 C 1.82917 * 99.53786 * 217.11858 * 21 20 18 23 23 C 1.54501 * 104.97573 * 44.28952 * 22 21 20 24 24 S 1.82123 * 106.98182 * 313.62210 * 23 22 21 25 25 H 1.09001 * 109.46965 * 90.00300 * 1 2 3 26 26 H 1.08999 * 109.47052 * 209.99851 * 1 2 3 27 27 H 1.08995 * 109.47141 * 330.00307 * 1 2 3 28 28 H 1.08000 * 119.97210 * 0.04755 * 3 2 1 29 29 H 1.08002 * 119.96460 * 180.02562 * 6 4 3 30 30 H 1.07999 * 120.03020 * 179.72567 * 7 6 4 31 31 H 0.96994 * 120.00414 * 174.98383 * 13 12 10 32 32 H 1.09001 * 110.27295 * 64.87249 * 20 18 9 33 33 H 1.09000 * 110.34029 * 285.41878 * 22 21 20 34 34 H 1.09003 * 110.43119 * 163.20873 * 22 21 20 35 35 H 1.09000 * 109.95751 * 194.24522 * 23 22 21 36 36 H 1.08994 * 109.98627 * 73.02031 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1956 0.0000 4 6 3.5830 1.1962 -0.0005 5 9 4.2568 2.3671 0.0000 6 6 4.2784 -0.0021 -0.0005 7 6 3.5920 -1.1997 -0.0063 8 6 2.2022 -1.2028 -0.0005 9 7 1.5047 -2.4148 -0.0016 10 6 1.1622 -3.0099 1.1854 11 1 0.4961 -3.8599 1.1909 12 6 1.6722 -2.5195 2.3805 13 7 2.3361 -1.3853 2.3955 14 14 1.4145 -3.4719 3.9666 15 1 2.0277 -4.8185 3.8408 16 1 2.0509 -2.7410 5.0919 17 1 -0.0404 -3.6131 4.2285 18 6 1.1689 -2.9981 -1.1693 19 8 1.5283 -2.5064 -2.2181 20 6 0.3470 -4.2613 -1.1718 21 16 1.1848 -5.5656 -0.2023 22 6 0.7604 -7.0224 -1.2239 23 6 0.9970 -6.5700 -2.6822 24 16 0.2218 -4.9320 -2.8634 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6580 2.1309 0.0008 29 1 5.3584 0.0010 -0.0005 30 1 4.1345 -2.1336 -0.0108 31 1 2.6292 -1.0060 3.2388 32 1 -0.6463 -4.0663 -0.7675 33 1 -0.2842 -7.2967 -1.0772 34 1 1.4102 -7.8622 -0.9776 35 1 0.5360 -7.2780 -3.3708 36 1 2.0663 -6.4997 -2.8816 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875980688.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:41 Heat of formation + Delta-G solvation = -38.086316 kcal Electronic energy + Delta-G solvation = -23934.390539 eV Core-core repulsion = 20357.974938 eV Total energy + Delta-G solvation = -3576.415600 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.69470 -41.38504 -39.04926 -36.61367 -34.05694 -33.66863 -33.35257 -31.61516 -29.66207 -27.85819 -26.68871 -24.64374 -23.71948 -22.59320 -21.31502 -19.91183 -18.64533 -17.97591 -17.88464 -17.38904 -17.13476 -16.76769 -16.39348 -16.27410 -15.95934 -15.49974 -15.20361 -14.80446 -14.69075 -14.32324 -14.21337 -14.11533 -13.75330 -13.50719 -13.35965 -13.25899 -13.02711 -12.91270 -12.71071 -12.50721 -12.32368 -12.16297 -12.00928 -11.55902 -11.20807 -10.80822 -10.49581 -10.01240 -9.57550 -9.35405 -8.84879 -8.77893 -7.97767 -5.94327 0.09620 0.36380 0.54633 0.59055 0.92391 1.42544 1.48534 1.55463 1.75059 1.97211 2.23218 2.64342 2.91068 3.18440 3.48926 3.54288 3.85652 3.97558 4.00457 4.06273 4.07593 4.34734 4.44806 4.56760 4.62914 4.73460 4.75429 4.78578 4.91699 5.04030 5.31640 5.39104 5.41581 5.52351 5.68474 5.90329 6.13521 6.47855 7.04694 7.37483 7.78757 8.69845 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013159 B = 0.005870 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.277093 B = 4769.101617 C = 6076.195056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.069 4.069 3 C -0.147 4.147 4 C 0.062 3.938 5 F -0.151 7.151 6 C -0.150 4.150 7 C -0.078 4.078 8 C 0.233 3.767 9 N -0.404 5.404 10 C -0.349 4.349 11 H 0.123 0.877 12 C 0.012 3.988 13 N -0.866 5.866 14 Si 0.976 3.024 15 H -0.268 1.268 16 H -0.288 1.288 17 H -0.263 1.263 18 C 0.471 3.529 19 O -0.594 6.594 20 C -0.017 4.017 21 S -0.214 6.214 22 C -0.102 4.102 23 C -0.077 4.077 24 S -0.248 6.248 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.144 0.856 29 H 0.140 0.860 30 H 0.102 0.898 31 H 0.270 0.730 32 H 0.135 0.865 33 H 0.117 0.883 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.325 -7.566 -2.398 8.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.071 4.071 3 C -0.167 4.167 4 C 0.043 3.957 5 F -0.130 7.130 6 C -0.169 4.169 7 C -0.098 4.098 8 C 0.141 3.859 9 N -0.120 5.120 10 C -0.476 4.476 11 H 0.140 0.860 12 C -0.193 4.193 13 N -0.502 5.502 14 Si 0.800 3.200 15 H -0.193 1.193 16 H -0.213 1.213 17 H -0.188 1.188 18 C 0.258 3.742 19 O -0.480 6.480 20 C -0.259 4.259 21 S 0.013 5.987 22 C -0.251 4.251 23 C -0.227 4.227 24 S -0.022 6.022 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.162 0.838 29 H 0.158 0.842 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.153 0.847 33 H 0.135 0.865 34 H 0.168 0.832 35 H 0.170 0.830 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.817 -6.669 -2.697 7.725 hybrid contribution 0.037 -0.454 1.168 1.253 sum -2.781 -7.122 -1.529 7.797 Atomic orbital electron populations 1.20552 0.90488 1.02972 1.01198 1.19763 0.96777 0.91559 0.99025 1.20761 0.92102 0.98564 1.05231 1.17477 0.90274 0.80718 1.07239 1.91395 1.80609 1.46345 1.94669 1.20775 1.00376 0.90674 1.05121 1.20673 0.93543 0.96834 0.98718 1.17052 0.90227 0.85096 0.93488 1.41300 1.47737 1.17363 1.05552 1.20047 1.30330 1.14808 0.82435 0.86005 1.25871 0.94975 0.96570 1.01875 1.69993 1.35489 1.17200 1.27486 0.85207 0.79011 0.78476 0.77279 1.19323 1.21341 1.18799 1.19403 0.85058 0.86372 0.83408 1.90621 1.59235 1.66343 1.31785 1.25445 1.04841 0.98510 0.97062 1.88544 1.71290 1.00944 1.37874 1.24832 1.08072 0.99170 0.93011 1.24489 1.05057 0.93330 0.99869 1.87120 1.79282 1.20429 1.15408 0.92117 0.92237 0.90311 0.83833 0.84227 0.88013 0.91828 0.84714 0.86483 0.83162 0.82965 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.76 9.77 71.24 0.70 -3.07 16 2 C -0.07 -3.08 5.37 -19.73 -0.11 -3.19 16 3 C -0.15 -5.99 9.67 22.30 0.22 -5.78 16 4 C 0.06 2.55 7.30 22.40 0.16 2.71 16 5 F -0.15 -5.77 17.26 44.97 0.78 -4.99 16 6 C -0.15 -6.28 10.02 22.29 0.22 -6.05 16 7 C -0.08 -3.65 8.75 22.40 0.20 -3.45 16 8 C 0.23 11.16 2.21 38.21 0.08 11.24 16 9 N -0.40 -19.18 1.78 -458.87 -0.82 -19.99 16 10 C -0.35 -16.14 7.60 84.02 0.64 -15.50 16 11 H 0.12 5.35 5.09 -6.48 -0.03 5.32 16 12 C 0.01 0.57 5.44 84.91 0.46 1.03 16 13 N -0.87 -42.11 9.44 21.65 0.20 -41.90 16 14 Si 0.98 37.95 29.56 68.60 2.03 39.98 16 15 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 16 H -0.29 -11.35 7.11 99.48 0.71 -10.64 16 17 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 18 C 0.47 21.99 7.13 87.66 0.63 22.62 16 19 O -0.59 -31.17 15.94 -3.05 -0.05 -31.22 16 20 C -0.02 -0.65 3.05 71.24 0.22 -0.43 16 21 S -0.21 -7.16 19.19 -49.83 -0.96 -8.11 16 22 C -0.10 -2.08 7.04 72.49 0.51 -1.57 16 23 C -0.08 -1.69 6.84 72.49 0.50 -1.20 16 24 S -0.25 -8.27 21.50 -49.83 -1.07 -9.34 16 25 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 26 H 0.06 2.54 6.92 -2.39 -0.02 2.52 16 27 H 0.08 2.66 8.09 -2.39 -0.02 2.64 16 28 H 0.14 4.95 8.06 -2.91 -0.02 4.93 16 29 H 0.14 5.03 8.06 -2.91 -0.02 5.01 16 30 H 0.10 4.86 8.06 -2.91 -0.02 4.83 16 31 H 0.27 12.94 8.32 -92.71 -0.77 12.17 16 32 H 0.14 4.90 8.10 -2.39 -0.02 4.88 16 33 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.15 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -60.10 327.60 5.63 -54.47 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 1.09 Total: 23.75 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 4.42 Total: -2.64 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -0.61 Total: -61.90 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.05 Total: -31.22 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.78 Total: -4.99 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Atomic # 16 Polarization: -15.43 SS G_CDS: -2.03 Total: -17.45 kcal Total: -60.10 5.63 -54.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875980688.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.386 kcal (2) G-P(sol) polarization free energy of solvation -60.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds