Wall clock time and date at job start Tue Mar 31 2020 14:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46854 * 261.04129 * 3 2 1 5 5 C 1.36934 * 120.00072 * 273.53150 * 4 3 2 6 6 H 1.08004 * 119.99883 * 190.77248 * 5 4 3 7 7 C 1.38811 * 120.00126 * 10.77104 * 5 4 3 8 8 N 1.31616 * 119.99766 * 10.13354 * 7 5 4 9 9 Si 1.86796 * 119.99849 * 190.13688 * 7 5 4 10 10 H 1.48496 * 109.47440 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47283 * 120.00205 * 9 7 5 12 12 H 1.48502 * 109.46937 * 239.99646 * 9 7 5 13 13 S 1.65598 * 119.99743 * 93.53593 * 4 3 2 14 14 O 1.42102 * 106.40336 * 156.45847 * 13 4 3 15 15 O 1.42105 * 106.40750 * 23.53471 * 13 4 3 16 16 C 1.76198 * 107.21699 * 269.99762 * 13 4 3 17 17 C 1.38249 * 119.98402 * 270.56967 * 16 13 4 18 18 C 1.50692 * 119.99446 * 0.02562 * 17 16 13 19 19 C 1.38218 * 120.01119 * 180.02562 * 17 16 13 20 20 C 1.38358 * 119.98588 * 359.97438 * 19 17 16 21 21 Cl 1.73599 * 120.00936 * 179.97438 * 20 19 17 22 22 C 1.38350 * 119.97220 * 0.02735 * 20 19 17 23 23 C 1.38207 * 119.98955 * 359.97438 * 22 20 19 24 24 C 1.50704 * 119.99453 * 180.02562 * 23 22 20 25 25 H 4.40638 * 5.51489 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47175 * 141.04575 * 3 2 1 27 27 H 1.08996 * 109.47534 * 21.04305 * 3 2 1 28 28 H 0.97003 * 119.99991 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47356 * 277.46353 * 18 17 16 30 30 H 1.09003 * 109.47630 * 37.46523 * 18 17 16 31 31 H 1.09003 * 109.47195 * 157.46680 * 18 17 16 32 32 H 1.07996 * 120.00754 * 179.70853 * 19 17 16 33 33 H 1.07996 * 120.00313 * 179.97438 * 22 20 19 34 34 H 1.09004 * 109.47125 * 262.45579 * 24 23 22 35 35 H 1.09002 * 109.47085 * 22.45398 * 24 23 22 36 36 H 1.09001 * 109.47297 * 142.45511 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.2160 1.3644 5 6 3.2929 1.4895 1.8418 6 1 3.8121 1.6559 2.7742 7 6 2.7866 2.5667 1.1275 8 7 1.9866 2.3594 0.1032 9 14 3.2408 4.3104 1.6200 10 1 4.1478 4.2725 2.7952 11 1 3.9271 4.9819 0.4871 12 1 2.0090 5.0630 1.9688 13 16 3.4940 -1.0809 2.3293 14 8 4.4177 -0.6129 3.3025 15 8 3.7694 -2.1671 1.4555 16 6 2.0236 -1.5053 3.2024 17 6 1.7518 -0.9183 4.4242 18 6 2.7127 0.0846 5.0086 19 6 0.5988 -1.2513 5.1099 20 6 -0.2836 -2.1718 4.5729 21 17 -1.7317 -2.5909 5.4339 22 6 -0.0110 -2.7588 3.3502 23 6 1.1423 -2.4251 2.6655 24 6 1.4392 -3.0641 1.3333 25 1 -1.0501 -0.0002 0.0000 26 1 3.0089 0.7999 -0.6461 27 1 3.0098 -0.9582 -0.3690 28 1 1.6331 3.1121 -0.3963 29 1 3.5222 -0.4404 5.5157 30 1 3.1242 0.7018 4.2099 31 1 2.1869 0.7181 5.7230 32 1 0.3888 -0.7962 6.0665 33 1 -0.6992 -3.4777 2.9308 34 1 2.1235 -3.9004 1.4760 35 1 0.5117 -3.4253 0.8889 36 1 1.8970 -2.3288 0.6716 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885166379.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:24 Heat of formation + Delta-G solvation = 20.748069 kcal Electronic energy + Delta-G solvation = -24616.563645 eV Core-core repulsion = 21028.282799 eV Total energy + Delta-G solvation = -3588.280846 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.16394 -36.53222 -36.41243 -36.32389 -34.62564 -33.00292 -32.04179 -31.38178 -31.18903 -26.94334 -26.79938 -26.29400 -23.87087 -22.28832 -20.53106 -18.70428 -18.04377 -17.36582 -16.67206 -16.26075 -15.81922 -15.64763 -14.70955 -14.32072 -13.82526 -13.75829 -13.45024 -13.30831 -12.88075 -12.72635 -12.49864 -12.38126 -12.25460 -12.19164 -11.98022 -11.59362 -11.28815 -11.20551 -11.08206 -10.89899 -10.70022 -10.65647 -10.52922 -10.30041 -10.15430 -9.91024 -9.62009 -9.25486 -8.91353 -8.52350 -8.33800 -8.29634 -6.58033 -4.10598 1.13947 1.61189 1.62160 2.21479 3.03746 3.11055 3.16185 3.62607 3.84385 3.95264 4.13567 4.53075 4.67342 4.93646 4.96947 5.10782 5.39374 5.41969 5.53916 5.67287 5.82038 5.88871 6.02125 6.10065 6.17354 6.22587 6.27771 6.40315 6.43857 6.66055 6.76791 6.79760 6.87779 6.99578 7.12767 7.19529 7.28728 8.10820 8.50005 8.87229 8.93051 10.29616 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.005720 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.856649 B = 4893.855313 C = 5102.316558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.105 4.105 3 C 0.236 3.764 4 N -0.800 5.800 5 C -0.249 4.249 6 H 0.124 0.876 7 C 0.029 3.971 8 N -0.828 5.828 9 Si 0.929 3.071 10 H -0.261 1.261 11 H -0.275 1.275 12 H -0.278 1.278 13 S 2.543 3.457 14 O -0.978 6.978 15 O -0.992 6.992 16 C -0.664 4.664 17 C 0.033 3.967 18 C -0.136 4.136 19 C -0.152 4.152 20 C 0.009 3.991 21 Cl -0.083 7.083 22 C -0.151 4.151 23 C 0.031 3.969 24 C -0.130 4.130 25 H 0.194 0.806 26 H 0.130 0.870 27 H 0.076 0.924 28 H 0.276 0.724 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 -3.642 2.948 5.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.108 4.108 3 C 0.111 3.889 4 N -0.623 5.623 5 C -0.394 4.394 6 H 0.141 0.859 7 C -0.182 4.182 8 N -0.469 5.469 9 Si 0.754 3.246 10 H -0.185 1.185 11 H -0.201 1.201 12 H -0.204 1.204 13 S 2.640 3.360 14 O -0.968 6.968 15 O -0.981 6.981 16 C -0.742 4.742 17 C 0.032 3.968 18 C -0.193 4.193 19 C -0.171 4.171 20 C -0.018 4.018 21 Cl -0.055 7.055 22 C -0.170 4.170 23 C 0.030 3.970 24 C -0.186 4.186 25 H 0.211 0.789 26 H 0.147 0.853 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.891 -4.285 3.077 6.015 hybrid contribution -1.609 0.844 0.730 1.958 sum -4.499 -3.441 3.807 6.825 Atomic orbital electron populations 1.24180 0.95295 1.07732 1.01903 1.23347 0.94489 0.94361 0.98591 1.18624 0.83890 1.01583 0.84818 1.54839 1.72872 1.17770 1.16793 1.20121 1.28831 0.80650 1.09825 0.85898 1.25598 0.95087 1.00882 0.96622 1.70093 1.27104 1.32183 1.17502 0.85793 0.78733 0.80729 0.79332 1.18525 1.20064 1.20407 1.10786 0.78144 0.74125 0.72933 1.93393 1.62533 1.80156 1.60672 1.93387 1.85704 1.54417 1.64615 1.32188 1.26771 1.06975 1.08307 1.19533 0.93133 0.92769 0.91371 1.21369 0.97441 0.97585 1.02874 1.20945 0.94971 0.99945 1.01275 1.20975 0.88576 0.98341 0.93924 1.98339 1.37466 1.92707 1.76943 1.20906 0.98870 1.02786 0.94459 1.19492 0.91131 0.91506 0.94917 1.21280 1.01697 1.02572 0.93048 0.78890 0.85259 0.90642 0.91288 0.89556 0.87858 0.92125 0.85247 0.85307 0.89550 0.92064 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.46 19.25 29.55 0.57 -4.89 16 2 C -0.11 -2.24 10.06 -37.12 -0.37 -2.61 16 3 C 0.24 5.00 4.85 -6.83 -0.03 4.97 16 4 N -0.80 -17.87 2.88 -62.77 -0.18 -18.05 16 5 C -0.25 -5.69 8.85 -15.06 -0.13 -5.82 16 6 H 0.12 2.76 5.71 -52.48 -0.30 2.46 16 7 C 0.03 0.64 5.24 -17.43 -0.09 0.55 16 8 N -0.83 -18.79 8.31 55.49 0.46 -18.33 16 9 Si 0.93 17.69 29.57 -169.99 -5.03 12.67 16 10 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 11 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 12 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 13 S 2.54 56.05 4.92 -107.50 -0.53 55.52 16 14 O -0.98 -22.79 13.28 -57.17 -0.76 -23.55 16 15 O -0.99 -22.33 12.94 -57.17 -0.74 -23.07 16 16 C -0.66 -13.72 5.97 -39.58 -0.24 -13.96 16 17 C 0.03 0.65 5.88 -104.63 -0.61 0.03 16 18 C -0.14 -2.49 8.31 36.00 0.30 -2.19 16 19 C -0.15 -2.64 9.46 -39.54 -0.37 -3.01 16 20 C 0.01 0.14 6.32 -39.50 -0.25 -0.11 16 21 Cl -0.08 -1.19 28.96 -51.86 -1.50 -2.69 16 22 C -0.15 -2.59 9.46 -39.55 -0.37 -2.97 16 23 C 0.03 0.59 5.88 -104.63 -0.61 -0.02 16 24 C -0.13 -2.30 8.31 36.01 0.30 -2.00 16 25 H 0.19 3.29 7.80 -54.09 -0.42 2.87 16 26 H 0.13 2.80 6.21 -51.93 -0.32 2.48 16 27 H 0.08 1.48 6.21 -51.93 -0.32 1.16 16 28 H 0.28 5.97 8.31 -40.82 -0.34 5.63 16 29 H 0.09 1.53 7.78 -51.93 -0.40 1.12 16 30 H 0.10 2.07 3.84 -51.93 -0.20 1.88 16 31 H 0.06 0.92 8.03 -51.93 -0.42 0.51 16 32 H 0.13 1.92 8.05 -52.49 -0.42 1.50 16 33 H 0.13 1.89 8.05 -52.49 -0.42 1.47 16 34 H 0.09 1.49 7.79 -51.93 -0.40 1.08 16 35 H 0.06 0.92 8.03 -51.93 -0.42 0.50 16 36 H 0.09 1.78 3.25 -51.93 -0.17 1.61 16 LS Contribution 319.09 15.07 4.81 4.81 Total: -1.00 -26.01 319.09 -8.75 -34.76 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -3.36 Total: 9.95 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: -1.93 Total: -32.02 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.28 Total: -36.38 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -1.50 Total: -46.62 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.67 kcal Atomic # 16 Polarization: 56.05 SS G_CDS: -0.53 Total: 55.52 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.50 Total: -2.69 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.01 -8.75 -34.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885166379.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.513 kcal (2) G-P(sol) polarization free energy of solvation -26.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds