Wall clock time and date at job start Tue Mar 31 2020 14:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46854 * 261.04129 * 3 2 1 5 5 C 1.36934 * 120.00072 * 273.53150 * 4 3 2 6 6 H 1.08004 * 119.99883 * 190.77248 * 5 4 3 7 7 C 1.38811 * 120.00126 * 10.77104 * 5 4 3 8 8 N 1.31616 * 119.99766 * 10.13354 * 7 5 4 9 9 Si 1.86796 * 119.99849 * 190.13688 * 7 5 4 10 10 H 1.48496 * 109.47440 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47283 * 120.00205 * 9 7 5 12 12 H 1.48502 * 109.46937 * 239.99646 * 9 7 5 13 13 S 1.65598 * 119.99743 * 93.53593 * 4 3 2 14 14 O 1.42102 * 106.40336 * 156.45847 * 13 4 3 15 15 O 1.42105 * 106.40750 * 23.53471 * 13 4 3 16 16 C 1.76198 * 107.21699 * 269.99762 * 13 4 3 17 17 C 1.38249 * 119.98402 * 270.56967 * 16 13 4 18 18 C 1.50692 * 119.99446 * 0.02562 * 17 16 13 19 19 C 1.38218 * 120.01119 * 180.02562 * 17 16 13 20 20 C 1.38358 * 119.98588 * 359.97438 * 19 17 16 21 21 Cl 1.73599 * 120.00936 * 179.97438 * 20 19 17 22 22 C 1.38350 * 119.97220 * 0.02735 * 20 19 17 23 23 C 1.38207 * 119.98955 * 359.97438 * 22 20 19 24 24 C 1.50704 * 119.99453 * 180.02562 * 23 22 20 25 25 H 4.40638 * 5.51489 * 180.02562 * 4 1 2 26 26 H 1.08995 * 109.47175 * 141.04575 * 3 2 1 27 27 H 1.08996 * 109.47534 * 21.04305 * 3 2 1 28 28 H 0.97003 * 119.99991 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.47356 * 277.46353 * 18 17 16 30 30 H 1.09003 * 109.47630 * 37.46523 * 18 17 16 31 31 H 1.09003 * 109.47195 * 157.46680 * 18 17 16 32 32 H 1.07996 * 120.00754 * 179.70853 * 19 17 16 33 33 H 1.07996 * 120.00313 * 179.97438 * 22 20 19 34 34 H 1.09004 * 109.47125 * 262.45579 * 24 23 22 35 35 H 1.09002 * 109.47085 * 22.45398 * 24 23 22 36 36 H 1.09001 * 109.47297 * 142.45511 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.2160 1.3644 5 6 3.2929 1.4895 1.8418 6 1 3.8121 1.6559 2.7742 7 6 2.7866 2.5667 1.1275 8 7 1.9866 2.3594 0.1032 9 14 3.2408 4.3104 1.6200 10 1 4.1478 4.2725 2.7952 11 1 3.9271 4.9819 0.4871 12 1 2.0090 5.0630 1.9688 13 16 3.4940 -1.0809 2.3293 14 8 4.4177 -0.6129 3.3025 15 8 3.7694 -2.1671 1.4555 16 6 2.0236 -1.5053 3.2024 17 6 1.7518 -0.9183 4.4242 18 6 2.7127 0.0846 5.0086 19 6 0.5988 -1.2513 5.1099 20 6 -0.2836 -2.1718 4.5729 21 17 -1.7317 -2.5909 5.4339 22 6 -0.0110 -2.7588 3.3502 23 6 1.1423 -2.4251 2.6655 24 6 1.4392 -3.0641 1.3333 25 1 -1.0501 -0.0002 0.0000 26 1 3.0089 0.7999 -0.6461 27 1 3.0098 -0.9582 -0.3690 28 1 1.6331 3.1121 -0.3963 29 1 3.5222 -0.4404 5.5157 30 1 3.1242 0.7018 4.2099 31 1 2.1869 0.7181 5.7230 32 1 0.3888 -0.7962 6.0665 33 1 -0.6992 -3.4777 2.9308 34 1 2.1235 -3.9004 1.4760 35 1 0.5117 -3.4253 0.8889 36 1 1.8970 -2.3288 0.6716 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885166379.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:23 Heat of formation + Delta-G solvation = 8.113477 kcal Electronic energy + Delta-G solvation = -24617.111522 eV Core-core repulsion = 21028.282799 eV Total energy + Delta-G solvation = -3588.828723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.048 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.56151 -38.22484 -38.04239 -37.66214 -36.44714 -34.45084 -33.65601 -32.84057 -32.76458 -28.42811 -28.37021 -27.70059 -25.55819 -23.73388 -21.94173 -20.39343 -19.67649 -18.99820 -18.31224 -17.85648 -17.30250 -17.00769 -16.34192 -15.96326 -15.28063 -15.19539 -15.12510 -14.85500 -14.43651 -14.10068 -14.00997 -13.73512 -13.69960 -13.64790 -13.48213 -13.16613 -12.86102 -12.75383 -12.57808 -12.54737 -12.24846 -12.07837 -11.97659 -11.87540 -11.75419 -11.54362 -11.21946 -10.86423 -10.52871 -10.01811 -9.92598 -9.68340 -8.21057 -5.83363 -0.34223 -0.04629 0.22506 0.92752 1.51195 1.54975 1.65823 2.05333 2.36512 2.37568 2.52925 2.88019 2.99897 3.25168 3.54931 3.74486 3.82525 4.00199 4.08398 4.30650 4.35320 4.49365 4.59424 4.65638 4.74161 4.77631 4.83158 5.03044 5.05284 5.09826 5.27740 5.32247 5.37987 5.45339 5.54093 5.66081 5.77455 6.42981 6.84430 7.24355 7.29892 8.66807 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.013564 B = 0.005720 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.856649 B = 4893.855313 C = 5102.316558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.129 4.129 3 C 0.238 3.762 4 N -0.815 5.815 5 C -0.281 4.281 6 H 0.118 0.882 7 C -0.001 4.001 8 N -0.852 5.852 9 Si 0.981 3.019 10 H -0.260 1.260 11 H -0.273 1.273 12 H -0.281 1.281 13 S 2.571 3.429 14 O -0.995 6.995 15 O -1.001 7.001 16 C -0.691 4.691 17 C 0.018 3.982 18 C -0.139 4.139 19 C -0.153 4.153 20 C 0.010 3.990 21 Cl -0.054 7.054 22 C -0.150 4.150 23 C 0.021 3.979 24 C -0.133 4.133 25 H 0.221 0.779 26 H 0.119 0.881 27 H 0.083 0.917 28 H 0.274 0.726 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.156 0.844 33 H 0.157 0.843 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.370 -4.349 4.142 8.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.132 4.132 3 C 0.113 3.887 4 N -0.639 5.639 5 C -0.423 4.423 6 H 0.135 0.865 7 C -0.208 4.208 8 N -0.492 5.492 9 Si 0.805 3.195 10 H -0.184 1.184 11 H -0.199 1.199 12 H -0.207 1.207 13 S 2.671 3.329 14 O -0.985 6.985 15 O -0.991 6.991 16 C -0.773 4.773 17 C 0.017 3.983 18 C -0.196 4.196 19 C -0.172 4.172 20 C -0.017 4.017 21 Cl -0.025 7.025 22 C -0.169 4.169 23 C 0.019 3.981 24 C -0.190 4.190 25 H 0.238 0.762 26 H 0.137 0.863 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.173 0.827 33 H 0.174 0.826 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.744 -4.941 4.237 8.054 hybrid contribution -1.123 0.834 0.486 1.481 sum -5.867 -4.107 4.724 8.579 Atomic orbital electron populations 1.24855 0.96084 1.06729 1.00792 1.23474 0.94845 0.95288 0.99602 1.18529 0.84448 1.01427 0.84308 1.54453 1.74382 1.17560 1.17514 1.20130 1.30802 0.81247 1.10140 0.86474 1.26129 0.94951 1.03166 0.96564 1.70178 1.28168 1.32531 1.18370 0.85019 0.78173 0.77340 0.78971 1.18364 1.19867 1.20692 1.08830 0.77820 0.73588 0.72700 1.93382 1.63390 1.80617 1.61158 1.93384 1.86075 1.54518 1.65131 1.31810 1.26509 1.09386 1.09574 1.19736 0.94239 0.93029 0.91317 1.21378 0.97750 0.97641 1.02807 1.21205 0.94099 0.99856 1.02043 1.21142 0.89280 0.97395 0.93864 1.98355 1.35548 1.92374 1.76222 1.21187 0.98437 1.02887 0.94431 1.19696 0.91607 0.91313 0.95493 1.21320 1.03126 1.02090 0.92448 0.76181 0.86342 0.89961 0.91482 0.89537 0.90042 0.89217 0.82679 0.82571 0.89426 0.89194 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -10.37 19.25 74.32 1.43 -8.94 16 2 C -0.13 -5.51 10.06 31.12 0.31 -5.20 16 3 C 0.24 10.35 4.85 84.57 0.41 10.76 16 4 N -0.81 -37.30 2.88 -352.52 -1.02 -38.32 16 5 C -0.28 -13.20 8.85 84.03 0.74 -12.46 16 6 H 0.12 5.47 5.71 -2.91 -0.02 5.45 16 7 C 0.00 -0.02 5.24 84.86 0.44 0.42 16 8 N -0.85 -39.41 8.31 21.65 0.18 -39.23 16 9 Si 0.98 36.80 29.57 68.60 2.03 38.83 16 10 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 11 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 12 H -0.28 -10.56 7.11 99.48 0.71 -9.85 16 13 S 2.57 114.80 4.92 -56.49 -0.28 114.52 16 14 O -1.00 -47.31 13.28 -128.00 -1.70 -49.01 16 15 O -1.00 -45.52 12.94 -128.00 -1.66 -47.17 16 16 C -0.69 -28.06 5.97 22.27 0.13 -27.93 16 17 C 0.02 0.69 5.88 -19.87 -0.12 0.57 16 18 C -0.14 -4.99 8.31 71.23 0.59 -4.40 16 19 C -0.15 -4.89 9.46 22.29 0.21 -4.68 16 20 C 0.01 0.31 6.32 22.32 0.14 0.45 16 21 Cl -0.05 -1.34 28.96 -2.72 -0.08 -1.41 16 22 C -0.15 -4.71 9.46 22.29 0.21 -4.50 16 23 C 0.02 0.75 5.88 -19.87 -0.12 0.63 16 24 C -0.13 -4.54 8.31 71.24 0.59 -3.95 16 25 H 0.22 6.99 7.80 -4.41 -0.03 6.95 16 26 H 0.12 5.36 6.21 -2.39 -0.01 5.34 16 27 H 0.08 3.34 6.21 -2.39 -0.01 3.32 16 28 H 0.27 12.11 8.31 -92.71 -0.77 11.34 16 29 H 0.09 3.03 7.78 -2.39 -0.02 3.01 16 30 H 0.08 3.32 3.84 -2.39 -0.01 3.31 16 31 H 0.09 2.59 8.03 -2.39 -0.02 2.57 16 32 H 0.16 4.06 8.05 -2.91 -0.02 4.03 16 33 H 0.16 3.95 8.05 -2.91 -0.02 3.93 16 34 H 0.09 2.92 7.79 -2.38 -0.02 2.90 16 35 H 0.09 2.47 8.03 -2.39 -0.02 2.45 16 36 H 0.08 2.86 3.25 -2.39 -0.01 2.86 16 Total: -1.00 -55.18 319.09 3.60 -51.58 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 1.13 Total: 29.43 kcal Atomic # 6 Polarization: -64.21 SS G_CDS: 4.99 Total: -59.22 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -0.84 Total: -77.55 kcal Atomic # 8 Polarization: -92.82 SS G_CDS: -3.36 Total: -96.18 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 2.03 Total: 38.83 kcal Atomic # 16 Polarization: 114.80 SS G_CDS: -0.28 Total: 114.52 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.41 kcal Total: -55.18 3.60 -51.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885166379.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.692 kcal (2) G-P(sol) polarization free energy of solvation -55.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds